MC04g0327 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g0327
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Plant regulator RWP-RK family protein
Location	MC04: 2585384 .. 2585509 (-)
RNA-Seq Expression	MC04g0327
Synteny	MC04g0327

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGATCAAGAAAGTAGGCCGTTCTCTAAGGAAACTCCAGCTTGTGATTGACTCGGTTCGAGGTGCTGAGGGTGCGATACAGATCGGGTACTTCTATAAAAGCTTCCCTCAATTGAAGTCTCCCAGC

mRNA sequence

AAGATCAAGAAAGTAGGCCGTTCTCTAAGGAAACTCCAGCTTGTGATTGACTCGGTTCGAGGTGCTGAGGGTGCGATACAGATCGGGTACTTCTATAAAAGCTTCCCTCAATTGAAGTCTCCCAGC

Coding sequence (CDS)

AAGATCAAGAAAGTAGGCCGTTCTCTAAGGAAACTCCAGCTTGTGATTGACTCGGTTCGAGGTGCTGAGGGTGCGATACAGATCGGGTACTTCTATAAAAGCTTCCCTCAATTGAAGTCTCCCAGC

Protein sequence

KIKKVGRSLRKLQLVIDSVRGAEGAIQIGYFYKSFPQLKSPS

Homology

[Close]

BLAST of MC04g0327 vs. ExPASy Swiss-Prot
Match: Q8H111 (Protein NLP1 OS=Arabidopsis thaliana OX=3702 GN=NLP1 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-09
Identity = 29/42 (69.05%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 1   KIKKVGRSLRKLQLVIDSVRGAEGAIQIGYFYKSFPQLKSPS 43
           KIKKVG SL+KLQLV+DSV+GA+G+IQ+  FY SFP+L SP+
Sbjct: 652 KIKKVGHSLKKLQLVMDSVQGAQGSIQLDSFYTSFPELNSPN 693

[Close]

BLAST of MC04g0327 vs. ExPASy Swiss-Prot
Match: Q7X9B9 (Protein NLP2 OS=Arabidopsis thaliana OX=3702 GN=NLP2 PE=2 SV=3)

HSP 1 Score: 62.0 bits (149), Expect = 1.9e-09
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 1   KIKKVGRSLRKLQLVIDSVRGAEGAIQIGYFYKSFPQLKSP 42
           KIKKVG SL+KLQLVIDSV+G +G+IQ+  FY SFP+L SP
Sbjct: 692 KIKKVGHSLKKLQLVIDSVQGVQGSIQLDSFYTSFPELSSP 732

[Close]

BLAST of MC04g0327 vs. ExPASy Swiss-Prot
Match: Q9SVF1 (Protein NLP3 OS=Arabidopsis thaliana OX=3702 GN=NLP3 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.0e-08
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 1   KIKKVGRSLRKLQLVIDSVRGAEGAIQIGYFYKSFPQLKSPS 43
           KIKKVG SLRKLQ+V+DSV G +G++ +  FY SFPQL+S S
Sbjct: 542 KIKKVGHSLRKLQVVMDSVEGVQGSLHLASFYSSFPQLQSSS 583

[Close]

BLAST of MC04g0327 vs. ExPASy Swiss-Prot
Match: Q9LE38 (Protein NLP4 OS=Arabidopsis thaliana OX=3702 GN=NLP4 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.6e-07
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 1   KIKKVGRSLRKLQLVIDSVRGAEGAIQIGYFYKSFPQLKSPS 43
           KIKKVG SL+K+Q VIDSV+G  G + IG FY +FP L S S
Sbjct: 602 KIKKVGHSLQKIQRVIDSVQGVSGPLPIGSFYANFPNLVSQS 643

[Close]

BLAST of MC04g0327 vs. ExPASy Swiss-Prot
Match: Q10S83 (Protein NLP1 OS=Oryza sativa subsp. japonica OX=39947 GN=NLP1 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.2e-05
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 1   KIKKVGRSLRKLQLVIDSVRGAEGAIQIGYFYKSF 36
           KIKKVG SL+KLQ+VIDSV G EG +Q+   Y++F
Sbjct: 666 KIKKVGHSLKKLQMVIDSVHGPEGTVQLSSLYENF 700

[Close]

BLAST of MC04g0327 vs. NCBI nr
Match: AGR88904.1 (nodule inception protein 1 [Datisca glomerata])

HSP 1 Score: 72.8 bits (177), Expect = 2.10e-13
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 1   KIKKVGRSLRKLQLVIDSVRGAEGAIQIGYFYKSFPQLKSPS 42
           KIKKVG SLRKLQLVIDSV+GAEGAIQIG FYKSFP+L SP+
Sbjct: 641 KIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYKSFPELSSPT 682

[Close]

BLAST of MC04g0327 vs. NCBI nr
Match: PON66248.1 (NIN transcription factor [Parasponia andersonii])

HSP 1 Score: 71.6 bits (174), Expect = 5.35e-13
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1   KIKKVGRSLRKLQLVIDSVRGAEGAIQIGYFYKSFPQLKSP 41
           KIKKVG SLRKLQLVIDSV+GAEGAIQIG FY SFPQL SP
Sbjct: 687 KIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYSSFPQLNSP 727

[Close]

BLAST of MC04g0327 vs. NCBI nr
Match: ASM47221.1 (nodule inception protein [Parasponia rigida])

HSP 1 Score: 71.6 bits (174), Expect = 5.35e-13
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1   KIKKVGRSLRKLQLVIDSVRGAEGAIQIGYFYKSFPQLKSP 41
           KIKKVG SLRKLQLVIDSV+GAEGAIQIG FY SFPQL SP
Sbjct: 687 KIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYSSFPQLNSP 727

[Close]

BLAST of MC04g0327 vs. NCBI nr
Match: ASM47250.1 (nodule inception protein [Parasponia rugosa])

HSP 1 Score: 71.6 bits (174), Expect = 5.35e-13
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1   KIKKVGRSLRKLQLVIDSVRGAEGAIQIGYFYKSFPQLKSP 41
           KIKKVG SLRKLQLVIDSV+GAEGAIQIG FY SFPQL SP
Sbjct: 687 KIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYSSFPQLNSP 727

[Close]

BLAST of MC04g0327 vs. NCBI nr
Match: ASM47277.1 (truncated nodule inception protein [Trema levigatum])

HSP 1 Score: 71.6 bits (174), Expect = 5.37e-13
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1   KIKKVGRSLRKLQLVIDSVRGAEGAIQIGYFYKSFPQLKSP 41
           KIKKVG SLRKLQLVIDSV+GAEGAIQIG FY SFPQL SP
Sbjct: 394 KIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYSSFPQLNSP 434

[Close]

BLAST of MC04g0327 vs. ExPASy TrEMBL
Match: T1SBU4 (Nodule inception protein 1 OS=Datisca glomerata OX=34297 GN=NIN1 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.02e-13
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 1   KIKKVGRSLRKLQLVIDSVRGAEGAIQIGYFYKSFPQLKSPS 42
           KIKKVG SLRKLQLVIDSV+GAEGAIQIG FYKSFP+L SP+
Sbjct: 641 KIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYKSFPELSSPT 682

[Close]

BLAST of MC04g0327 vs. ExPASy TrEMBL
Match: A0A2P5CYY1 (NIN transcription factor OS=Parasponia andersonii OX=3476 GN=PanNIN PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.59e-13
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1   KIKKVGRSLRKLQLVIDSVRGAEGAIQIGYFYKSFPQLKSP 41
           KIKKVG SLRKLQLVIDSV+GAEGAIQIG FY SFPQL SP
Sbjct: 687 KIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYSSFPQLNSP 727

[Close]

BLAST of MC04g0327 vs. ExPASy TrEMBL
Match: A0A221I0V1 (Nodule inception protein OS=Parasponia rigida OX=3477 GN=NIN PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.59e-13
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1   KIKKVGRSLRKLQLVIDSVRGAEGAIQIGYFYKSFPQLKSP 41
           KIKKVG SLRKLQLVIDSV+GAEGAIQIG FY SFPQL SP
Sbjct: 687 KIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYSSFPQLNSP 727

[Close]

BLAST of MC04g0327 vs. ExPASy TrEMBL
Match: A0A221I0T0 (Nodule inception protein OS=Parasponia rugosa OX=1603294 GN=NIN PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.59e-13
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1   KIKKVGRSLRKLQLVIDSVRGAEGAIQIGYFYKSFPQLKSP 41
           KIKKVG SLRKLQLVIDSV+GAEGAIQIG FY SFPQL SP
Sbjct: 687 KIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYSSFPQLNSP 727

[Close]

BLAST of MC04g0327 vs. ExPASy TrEMBL
Match: A0A221I0M0 (Truncated nodule inception protein OS=Trema levigatum OX=1184763 GN=NIN PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.60e-13
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1   KIKKVGRSLRKLQLVIDSVRGAEGAIQIGYFYKSFPQLKSP 41
           KIKKVG SLRKLQLVIDSV+GAEGAIQIG FY SFPQL SP
Sbjct: 394 KIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYSSFPQLNSP 434

[Close]

BLAST of MC04g0327 vs. TAIR 10
Match: AT2G17150.1 (Plant regulator RWP-RK family protein )

HSP 1 Score: 62.8 bits (151), Expect = 7.7e-11
Identity = 29/42 (69.05%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 1   KIKKVGRSLRKLQLVIDSVRGAEGAIQIGYFYKSFPQLKSPS 43
           KIKKVG SL+KLQLV+DSV+GA+G+IQ+  FY SFP+L SP+
Sbjct: 652 KIKKVGHSLKKLQLVMDSVQGAQGSIQLDSFYTSFPELNSPN 693

[Close]

BLAST of MC04g0327 vs. TAIR 10
Match: AT4G35270.1 (Plant regulator RWP-RK family protein )

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-10
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 1   KIKKVGRSLRKLQLVIDSVRGAEGAIQIGYFYKSFPQLKSP 42
           KIKKVG SL+KLQLVIDSV+G +G+IQ+  FY SFP+L SP
Sbjct: 692 KIKKVGHSLKKLQLVIDSVQGVQGSIQLDSFYTSFPELSSP 732

[Close]

BLAST of MC04g0327 vs. TAIR 10
Match: AT4G38340.1 (Plant regulator RWP-RK family protein )

HSP 1 Score: 58.5 bits (140), Expect = 1.5e-09
Identity = 27/42 (64.29%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 1   KIKKVGRSLRKLQLVIDSVRGAEGAIQIGYFYKSFPQLKSPS 43
           KIKKVG SLRKLQ+V+DSV G +G++ +  FY SFPQL+S S
Sbjct: 542 KIKKVGHSLRKLQVVMDSVEGVQGSLHLASFYSSFPQLQSSS 583

[Close]

BLAST of MC04g0327 vs. TAIR 10
Match: AT1G20640.1 (Plant regulator RWP-RK family protein )

HSP 1 Score: 53.1 bits (126), Expect = 6.1e-08
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 1   KIKKVGRSLRKLQLVIDSVRGAEGAIQIGYFYKSFPQLKSPS 43
           KIKKVG SL+K+Q VIDSV+G  G + IG FY +FP L S S
Sbjct: 602 KIKKVGHSLQKIQRVIDSVQGVSGPLPIGSFYANFPNLVSQS 643

[Close]

BLAST of MC04g0327 vs. TAIR 10
Match: AT1G20640.2 (Plant regulator RWP-RK family protein )

HSP 1 Score: 53.1 bits (126), Expect = 6.1e-08
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 1   KIKKVGRSLRKLQLVIDSVRGAEGAIQIGYFYKSFPQLKSPS 43
           KIKKVG SL+K+Q VIDSV+G  G + IG FY +FP L S S
Sbjct: 602 KIKKVGHSLQKIQRVIDSVQGVSGPLPIGSFYANFPNLVSQS 643

The following BLAST results are available for this feature:

BLAST of MC04g0327 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H111	1.1e-09	69.05	Protein NLP1 OS=Arabidopsis thaliana OX=3702 GN=NLP1 PE=2 SV=1	[more]
Q7X9B9	1.9e-09	70.73	Protein NLP2 OS=Arabidopsis thaliana OX=3702 GN=NLP2 PE=2 SV=3	[more]
Q9SVF1	2.0e-08	64.29	Protein NLP3 OS=Arabidopsis thaliana OX=3702 GN=NLP3 PE=2 SV=1	[more]
Q9LE38	8.6e-07	61.90	Protein NLP4 OS=Arabidopsis thaliana OX=3702 GN=NLP4 PE=2 SV=1	[more]
Q10S83	1.2e-05	62.86	Protein NLP1 OS=Oryza sativa subsp. japonica OX=39947 GN=NLP1 PE=2 SV=1	[more]

BLAST of MC04g0327 vs. NCBI nr


Match Name	E-value	Identity	Description
AGR88904.1	2.10e-13	85.71	nodule inception protein 1 [Datisca glomerata]	[more]
PON66248.1	5.35e-13	87.80	NIN transcription factor [Parasponia andersonii]	[more]
ASM47221.1	5.35e-13	87.80	nodule inception protein [Parasponia rigida]	[more]
ASM47250.1	5.35e-13	87.80	nodule inception protein [Parasponia rugosa]	[more]
ASM47277.1	5.37e-13	87.80	truncated nodule inception protein [Trema levigatum]	[more]

BLAST of MC04g0327 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
T1SBU4	1.02e-13	85.71	Nodule inception protein 1 OS=Datisca glomerata OX=34297 GN=NIN1 PE=2 SV=1	[more]
A0A2P5CYY1	2.59e-13	87.80	NIN transcription factor OS=Parasponia andersonii OX=3476 GN=PanNIN PE=4 SV=1	[more]
A0A221I0V1	2.59e-13	87.80	Nodule inception protein OS=Parasponia rigida OX=3477 GN=NIN PE=4 SV=1	[more]
A0A221I0T0	2.59e-13	87.80	Nodule inception protein OS=Parasponia rugosa OX=1603294 GN=NIN PE=4 SV=1	[more]
A0A221I0M0	2.60e-13	87.80	Truncated nodule inception protein OS=Trema levigatum OX=1184763 GN=NIN PE=4 SV=...	[more]

BLAST of MC04g0327 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G17150.1	7.7e-11	69.05	Plant regulator RWP-RK family protein	[more]
AT4G35270.1	1.3e-10	70.73	Plant regulator RWP-RK family protein	[more]
AT4G38340.1	1.5e-09	64.29	Plant regulator RWP-RK family protein	[more]
AT1G20640.1	6.1e-08	61.90	Plant regulator RWP-RK family protein	[more]
AT1G20640.2	6.1e-08	61.90	Plant regulator RWP-RK family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR32002:SF46	PROTEIN NLP2	coord: 1..41
IPR045012	Protein NLP	PANTHER	PTHR32002	PROTEIN NLP8	coord: 1..41

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g0327.1	MC04g0327.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity