MC04g0223 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC04g0223
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionhomeobox protein knotted-1-like LET6
LocationMC04: 1731981 .. 1735467 (-)
RNA-Seq ExpressionMC04g0223
SyntenyMC04g0223
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAGTGTCTCCTCCAATAGCACCCAAAATACCTTTATTCCCATCAATCCCACCACATCTGATTATCCATTTTGATCCTCCCCACATCCCCATCTTCATCATCATTAATTAAAACCCCCATTTCTCTCCTCTTTCCTTCTTACTTCTCTTCATTCTTCTTTCTTTTACTCACTTTTCCCCTCTCATGGGGTGCAACCAACGAGGTTCTTCCATATCTTCACTGTTTTTTCTTTCATCGGGAAGGAAACTCGCAGTCTCAGTCTCAGTCCCAGTCCCAGTCCCATAAAGAAAAAGATTTTAGGGTTCTTGTCCTCGTCGTCGTCGTTGTTATATATTGTTTGTAAAAGAAAAAGAAAAAAGACAAGTACGAAAAAGGACTGTTTGAGTTAGCTTAAATAGCGGGAGAAAAGGGCGCAGTAGTAGCAGGTTTTATGGAGCGTGGAGGATCCAGTGGAAGCAGTGGTGGCAGTTCTTTCATGGCGGGATTTGGGGAAAACAACAACAACAGCAGCAGCAGTGGGATTTCTTCTATGGTGATGATGAGTAGTAGTAGTAATAATAATTCCCAAATATTGGACAACAACAACAACAACGTTAATAATAAGCTGTTTGTGCCTTTATCTTGGTCTGCTACTTCCACTGCACAAAGGGTTTCTGCCTTTGTCCCTCAGCCTCCTCATAATAATTCAAATCATAATCTTCAAAACAGCTGCAGAGCTAAGATCATGGCTCATCCTCTCTTCCCCCGCCTCTTGGCTGCCTATGTCAACTGTCAAAAGGTCCGTTAATTAACTCCTGTTTTGTAACATTTTCGTTTCTTCTTTCTTGTTTCTGGAACTGGTGGTTGAGTTTTTTAAGGGCTGTTTTGGTTTCAATTCAATATCCATAGATTCGTAGAACAATTTTTCTATTTATGTTTTGGAACCAAATTGAATATGGAAACAAGAAAAAAAGAACCTTTTTGACGTTTTCAAAATTTCTATACAATTTTGAGGATCCAAGAAATATAATTAGTTACCAAGCGAAACTAGAAATGAAAACGCAGCCATAATTTACCGTAATTGATTCCCCTTTGATCTTGTGATCATGATTTCATGTGGTTGGTGGTGGTGGTGCAGGTGGGTGCGCCGCCGGAAGTGGTGGCAAGGCTGGAGCAGGCGTGCGCGGTGGCCGGAGGGAGCTGCAGGGCGACGGCGCGTGGGGATGATCCAGCACTGGATCAGTTCATGGAGGCGTACTGTGAGATGTTGAGCAAGTACGAGCAAGAGTTGAGCAAGCCCTTCAAAGAAGCCATGCTTTTCTTCTCAAGAATCGAGTCTCAGCTCAAAGCCTTGGCAGTTTCTTCTTCTACTTCTGATGGTCTGCTCACTCTCTATTCATCATTTTTTTTTTCTTTTGTGCATTTTCCTTTGATTTTGCCTTTAGATTATGGTTTTAATTTGGTGGGTGTAGGCAGTGGTTTTTGCAGTTCTGATGTGAGTTTTTTTTCATGTTTTAATTACACATCTAATCAGTAGAAATGAGTACTGGTATTACCCAGAGATTAGAAATGATTAAAAAAAGAAAGAGAAGTTTTTTAGAGATATTATTTAAACTTAAGATATGAATTATTATGATAATATGCAGTAATTTGGTTATAGTCAACGAAGAAATCAAACTGAGGGACGTTATCTTTTGTTTTTGTTGCAAACTTTTTTCAGGGTTGGTTTTGTTTCTCCGAAATGGCCAACTTTGAGTGCAGATTAAGTGGATAATAAGTATTTATTTCTATTTTTATGAGTTATAGGTTTGAGTTCAAGAAGAATAATCAATTTAGACTGCCGGATCATTTTGAATAATTTTGATGCTTAGATGTTAACGAATGACTCATAAATTTCCTCTTTTATTTATAAGCTTGAATTTATTTATTTAATAGGGTTGGAATGTGTACTCAGAAAATAATAATATTAGGTGTCTATTGATCAACACTCTGTCCACCAATAAATATTTGATCATCTTACAGGCTTTTTGAAAAAAAAAAAAACTATTTTACTGCATTTCTCCCTCACACTTGTCTAATACGTAATTGTGATCAGCAAAATATAGATGCTACACAGTAAGTTTGATAGATTGATGTTGTAGAAATAAAAAAAATGTGTATTTTATTTAACCTGGAGATTGTTTCAATAATTTATTGTCCAGTGCTTTGTAGTCTTGACCCTAATTGAAAGTTAATTTCTGAACTTGTTAATTGTCTTTGCTTTTGATTTAACTTTTAAGTTAAAGTGAAAGAGATTCATTTCTGTTTGTAATGAATCTTTCTTTGATTAAGTTCCTACCTGTGATGTATGTGACCCTTTTTTTTATTGATTGATTTTGAATATGTTTAGTAAACAAATAAAATTTTCCTTAACCTAATAGGCTCATGGATTCAGTGTAAATAAACTCATGAACATATTTAATTAACTTCTCATATCCTCCCACTTGAAATGACCAAATTTGGAGATACCCTCGTCAATTTTTAGTCTTTTTGGTTTAGTGAGCTAATATTTCACTTTCTAGCTAGCTCTGGGCCGAGGAAATGAGTTGTAAGAGAGAGATCACAGTTGGTTTGTATGGCTGCATGGTTGTGTGTTGTGAATTGGACAATGCCTATGTTCAGGTTGCGAGCTGGTCGGGCAAAGCGAGTGTTCGAAGGAGGTCGAGGTCGATATGAATGAGAACTACATTGACCCGCAGGCTGAAGAGAAGGAATTGAAGGGCCAGCTTCTACGCAAATACAGCGGATACCTCGGCAGCCTGAAGCAGGAGTTTCTGAAGAAGAAGAAGAACGGAAAGTTGCCGAAAGAAGCCCGGCAGGAGCTGCTCGACTGGTGGAGCAGGCACTACAAGTGGCCATACCCCTCGGTACGCATCATCTGTCATTCAAATTTTAGTGGGATCCATTTATCTATGACAACAGCTCTTGCTGATCAATGTCAATGTCGATATTAACGTGATGAGAATATGACCAGGAGGCACAAAAGGTGGCGTTGGCGGAGTCCACGGGGCTGGACCTGAAGCAGATCAACAACTGGTTCATAAACCAGAGGAAGAGGCATTGGAAGCCATCAGAGGATATGCAGTTTGTGGTGATGGATGCAGCTCATCCACACTACTATTTGGACAATGTCATCTGCAATAATCCCTTCTCTATGGACTGCTCCTCTACTCTCTTCTGATCATCATATAATGCCATTAATTTTCTAAGTAATGCAAGCTTTAATGTGTTTATGTTCAAGTAATTTCCATTTTGTTTAAGTTTAGGCTATTTGTATTGGATTTTATGGTCTTTTTTTACCACTAATCTAGCAATGCCTCATAGCTACCCCTTTCTCCATTCCCTTTGTTTCCATAGCTTGGTTTTCTGCTTTCCTTTTTAACAAATAGAATAGAATGATCTCACTTGTATGCTCAAACATGATTTTGCCCAATTTGGATCAGACCTTAATGTTACTACTCACTCAGAC

mRNA sequence

GGAGTGTCTCCTCCAATAGCACCCAAAATACCTTTATTCCCATCAATCCCACCACATCTGATTATCCATTTTGATCCTCCCCACATCCCCATCTTCATCATCATTAATTAAAACCCCCATTTCTCTCCTCTTTCCTTCTTACTTCTCTTCATTCTTCTTTCTTTTACTCACTTTTCCCCTCTCATGGGGTGCAACCAACGAGGTTCTTCCATATCTTCACTGTTTTTTCTTTCATCGGGAAGGAAACTCGCAGTCTCAGTCTCAGTCCCAGTCCCAGTCCCATAAAGAAAAAGATTTTAGGGTTCTTGTCCTCGTCGTCGTCGTTGTTATATATTGTTTGTAAAAGAAAAAGAAAAAAGACAAGTACGAAAAAGGACTGTTTGAGTTAGCTTAAATAGCGGGAGAAAAGGGCGCAGTAGTAGCAGGTTTTATGGAGCGTGGAGGATCCAGTGGAAGCAGTGGTGGCAGTTCTTTCATGGCGGGATTTGGGGAAAACAACAACAACAGCAGCAGCAGTGGGATTTCTTCTATGGTGATGATGAGTAGTAGTAGTAATAATAATTCCCAAATATTGGACAACAACAACAACAACGTTAATAATAAGCTGTTTGTGCCTTTATCTTGGTCTGCTACTTCCACTGCACAAAGGGTTTCTGCCTTTGTCCCTCAGCCTCCTCATAATAATTCAAATCATAATCTTCAAAACAGCTGCAGAGCTAAGATCATGGCTCATCCTCTCTTCCCCCGCCTCTTGGCTGCCTATGTCAACTGTCAAAAGGTGGGTGCGCCGCCGGAAGTGGTGGCAAGGCTGGAGCAGGCGTGCGCGGTGGCCGGAGGGAGCTGCAGGGCGACGGCGCGTGGGGATGATCCAGCACTGGATCAGTTCATGGAGGCGTACTGTGAGATGTTGAGCAAGTACGAGCAAGAGTTGAGCAAGCCCTTCAAAGAAGCCATGCTTTTCTTCTCAAGAATCGAGTCTCAGCTCAAAGCCTTGGCAGTTTCTTCTTCTACTTCTGATGGTTGCGAGCTGGTCGGGCAAAGCGAGTGTTCGAAGGAGGTCGAGGTCGATATGAATGAGAACTACATTGACCCGCAGGCTGAAGAGAAGGAATTGAAGGGCCAGCTTCTACGCAAATACAGCGGATACCTCGGCAGCCTGAAGCAGGAGTTTCTGAAGAAGAAGAAGAACGGAAAGTTGCCGAAAGAAGCCCGGCAGGAGCTGCTCGACTGGTGGAGCAGGCACTACAAGTGGCCATACCCCTCGGAGGCACAAAAGGTGGCGTTGGCGGAGTCCACGGGGCTGGACCTGAAGCAGATCAACAACTGGTTCATAAACCAGAGGAAGAGGCATTGGAAGCCATCAGAGGATATGCAGTTTGTGGTGATGGATGCAGCTCATCCACACTACTATTTGGACAATGTCATCTGCAATAATCCCTTCTCTATGGACTGCTCCTCTACTCTCTTCTGATCATCATATAATGCCATTAATTTTCTAAGTAATGCAAGCTTTAATGTGTTTATGTTCAAGTAATTTCCATTTTGTTTAAGTTTAGGCTATTTGTATTGGATTTTATGGTCTTTTTTTACCACTAATCTAGCAATGCCTCATAGCTACCCCTTTCTCCATTCCCTTTGTTTCCATAGCTTGGTTTTCTGCTTTCCTTTTTAACAAATAGAATAGAATGATCTCACTTGTATGCTCAAACATGATTTTGCCCAATTTGGATCAGACCTTAATGTTACTACTCACTCAGAC

Coding sequence (CDS)

ATGGAGCGTGGAGGATCCAGTGGAAGCAGTGGTGGCAGTTCTTTCATGGCGGGATTTGGGGAAAACAACAACAACAGCAGCAGCAGTGGGATTTCTTCTATGGTGATGATGAGTAGTAGTAGTAATAATAATTCCCAAATATTGGACAACAACAACAACAACGTTAATAATAAGCTGTTTGTGCCTTTATCTTGGTCTGCTACTTCCACTGCACAAAGGGTTTCTGCCTTTGTCCCTCAGCCTCCTCATAATAATTCAAATCATAATCTTCAAAACAGCTGCAGAGCTAAGATCATGGCTCATCCTCTCTTCCCCCGCCTCTTGGCTGCCTATGTCAACTGTCAAAAGGTGGGTGCGCCGCCGGAAGTGGTGGCAAGGCTGGAGCAGGCGTGCGCGGTGGCCGGAGGGAGCTGCAGGGCGACGGCGCGTGGGGATGATCCAGCACTGGATCAGTTCATGGAGGCGTACTGTGAGATGTTGAGCAAGTACGAGCAAGAGTTGAGCAAGCCCTTCAAAGAAGCCATGCTTTTCTTCTCAAGAATCGAGTCTCAGCTCAAAGCCTTGGCAGTTTCTTCTTCTACTTCTGATGGTTGCGAGCTGGTCGGGCAAAGCGAGTGTTCGAAGGAGGTCGAGGTCGATATGAATGAGAACTACATTGACCCGCAGGCTGAAGAGAAGGAATTGAAGGGCCAGCTTCTACGCAAATACAGCGGATACCTCGGCAGCCTGAAGCAGGAGTTTCTGAAGAAGAAGAAGAACGGAAAGTTGCCGAAAGAAGCCCGGCAGGAGCTGCTCGACTGGTGGAGCAGGCACTACAAGTGGCCATACCCCTCGGAGGCACAAAAGGTGGCGTTGGCGGAGTCCACGGGGCTGGACCTGAAGCAGATCAACAACTGGTTCATAAACCAGAGGAAGAGGCATTGGAAGCCATCAGAGGATATGCAGTTTGTGGTGATGGATGCAGCTCATCCACACTACTATTTGGACAATGTCATCTGCAATAATCCCTTCTCTATGGACTGCTCCTCTACTCTCTTCTGA

Protein sequence

MERGGSSGSSGGSSFMAGFGENNNNSSSSGISSMVMMSSSSNNNSQILDNNNNNVNNKLFVPLSWSATSTAQRVSAFVPQPPHNNSNHNLQNSCRAKIMAHPLFPRLLAAYVNCQKVGAPPEVVARLEQACAVAGGSCRATARGDDPALDQFMEAYCEMLSKYEQELSKPFKEAMLFFSRIESQLKALAVSSSTSDGCELVGQSECSKEVEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQELLDWWSRHYKWPYPSEAQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNNPFSMDCSSTLF
Homology
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BLAST of MC04g0223 vs. ExPASy Swiss-Prot
Match: P46608 (Homeobox protein SBH1 OS=Glycine max OX=3847 GN=H1 PE=2 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 1.8e-102
Identity = 221/380 (58.16%), Postives = 262/380 (68.95%), Query Frame = 0 

Query: 5   GSSGSSGGSSFMAGFGENNNNSSSSGISSMVMM---SSSSNNNSQILDNNNNNVN-NKLF 64
           G S SS G+S++  FGENN    S G+  M MM   +S    +  I  +NNNNVN N LF
Sbjct: 3   GGSSSSNGTSYLLAFGENN----SGGLCPMTMMPLVTSHHAGHHPINPSNNNNVNTNCLF 62

Query: 65  VPLSWSATSTAQ---------------------RVSAFVPQPPHNNSNHNLQN------- 124
           +P   ++T T                        +  +  +  H++ +H   N       
Sbjct: 63  IPNCSNSTGTPSIMLHNNHNNNKTDDDDNNNNTGLGYYFMESDHHHHHHGNNNNNGSSSS 122

Query: 125 ----SCRAKIMAHPLFPRLLAAYVNCQKVGAPPEVVARLEQACA----VAGGSCRA--TA 184
               + +AKIMAHP + RLLAAYVNCQKVGAPPEVVARLE+ACA    +AGG   A  + 
Sbjct: 123 SSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAATMAGGDAAAGSSC 182

Query: 185 RGDDPALDQFMEAYCEMLSKYEQELSKPFKEAMLFFSRIESQLKALAVSSSTSDGCELVG 244
            G+DPALDQFMEAYCEML+KYEQELSKP KEAMLF  RIE Q K L +SSS     E  G
Sbjct: 183 IGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIECQFKNLTISSSDFASNE-GG 242

Query: 245 QSECSKEVEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQ 304
               S E +VD++ N IDPQAE+++LKGQLLRKYSGYLGSLKQEF+KK+K GKLPKEARQ
Sbjct: 243 DRNGSSEEDVDLH-NMIDPQAEDRDLKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQ 302

Query: 305 ELLDWWSRHYKWPYPSEAQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAA 343
           +LL+WW+RHYKWPYPSE+QK+ALAESTGLD KQINNWFINQRKRHWKPSEDMQFVVMD +
Sbjct: 303 QLLEWWNRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPS 362

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BLAST of MC04g0223 vs. ExPASy Swiss-Prot
Match: Q38874 (Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis thaliana OX=3702 GN=STM PE=1 SV=2)

HSP 1 Score: 364.8 bits (935), Expect = 1.1e-99
Identity = 185/269 (68.77%), Postives = 214/269 (79.55%), Query Frame = 0 

Query: 86  SNHNLQNSCRAKIMAHPLFPRLLAAYVNCQKVGAPPEVVARLEQACAVAGGSCRAT---- 145
           S+ +   S +AKIMAHP + RLLAAYVNCQKVGAPPEVVARLE+AC+ A  +  +     
Sbjct: 113 SSSSSSASVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACSSAAAAAASMGPTG 172

Query: 146 ARGDDPALDQFMEAYCEMLSKYEQELSKPFKEAMLFFSRIESQLKALAVSSSTS----DG 205
             G+DP LDQFMEAYCEML KYEQELSKPFKEAM+F  R+E Q K+L++SS +S      
Sbjct: 173 CLGEDPGLDQFMEAYCEMLVKYEQELSKPFKEAMVFLQRVECQFKSLSLSSPSSFSGYGE 232

Query: 206 CELVGQSECSKEVEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLP 265
             +   +  S E EVDMN  ++DPQAE++ELKGQLLRKYSGYLGSLKQEF+KK+K GKLP
Sbjct: 233 TAIDRNNNGSSEEEVDMNNEFVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLP 292

Query: 266 KEARQELLDWWSRHYKWPYPSEAQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFV 325
           KEARQ+LLDWWSRHYKWPYPSE QK+ALAESTGLD KQINNWFINQRKRHWKPSEDMQFV
Sbjct: 293 KEARQQLLDWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFV 352

Query: 326 VMDAAHPHYYLDNVICNNPFSMD-CSSTL 346
           VMDA HPH+Y  + +  NPF MD  SST+
Sbjct: 353 VMDATHPHHYFMDNVLGNPFPMDHISSTM 381

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BLAST of MC04g0223 vs. ExPASy Swiss-Prot
Match: O22299 (Homeobox protein knotted-1-like LET6 OS=Solanum lycopersicum OX=4081 GN=LET6 PE=2 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 2.5e-99
Identity = 212/372 (56.99%), Postives = 266/372 (71.51%), Query Frame = 0 

Query: 1   MERGGSSGSSGGSSFMAGFG--ENNNNSSSSGISS------------MVMM-----SSSS 60
           ME G S  +S     M G+G  ENNNN++ +G  +            M+MM     S ++
Sbjct: 1   MEGGSSGNTSTSCLMMMGYGDHENNNNNNGNGNGNGNGNVTICAPPMMMMMPPPPPSLTN 60

Query: 61  NNNSQILDNNNNNVNNKLFVPLSWSATSTAQRVSAFVPQPPHNNSNHNLQNSCRAKIMAH 120
           NNN+   + +NNN+   LF+P   +  +         PQ  +N+S+    +S ++KIMAH
Sbjct: 61  NNNA---ETSNNNI---LFLPFMDNNNNNN-------PQEDNNSSS----SSIKSKIMAH 120

Query: 121 PLFPRLLAAYVNCQKVGAPPEVVARLEQACAVAGGSCRATAR------GDDPALDQFMEA 180
           P + RLL AY+NCQK+GAPPEVVARLE+ CA +    R+++       G+DPALDQFMEA
Sbjct: 121 PHYHRLLTAYLNCQKIGAPPEVVARLEEICATSATMGRSSSSSGGGIIGEDPALDQFMEA 180

Query: 181 YCEMLSKYEQELSKPFKEAMLFFSRIESQLKALAVSSSTSDGCEL--VGQSECSKEVEVD 240
           YCEML+KYEQELSKPFKEAM+F SRIE Q KAL ++ ++S    L        S + EVD
Sbjct: 181 YCEMLTKYEQELSKPFKEAMVFLSRIECQFKALTLAPNSSHESALGEAMDRNGSSDEEVD 240

Query: 241 MNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQELLDWWSRHYK 300
           +N ++IDPQAE++ELKGQLLRKYSGYLGSLKQEF+KK+K GKLPKEARQ+L+DWW RH K
Sbjct: 241 VNNSFIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLVDWWLRHIK 300

Query: 301 WPYPSEAQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVIC 346
           WPYPSE+QK+ALAESTGLD KQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYY+DNV+ 
Sbjct: 301 WPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYMDNVLA 354

[Close]
BLAST of MC04g0223 vs. ExPASy Swiss-Prot
Match: Q9M6D9 (Homeobox protein SHOOT MERISTEMLESS OS=Brassica oleracea OX=3712 GN=STM PE=2 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 1.5e-96
Identity = 178/254 (70.08%), Postives = 206/254 (81.10%), Query Frame = 0 

Query: 95  RAKIMAHPLFPRLLAAYVNCQKVGAPPEVVARLEQACAVAGGSCRAT----ARGDDPALD 154
           +AKIMAHP + RLL AYVNCQKVGAPPEV ARLE+ C+ A  +  +     + G+DP LD
Sbjct: 124 KAKIMAHPHYHRLLLAYVNCQKVGAPPEVQARLEETCSSAAAAAASMGPTGSLGEDPGLD 183

Query: 155 QFMEAYCEMLSKYEQELSKPFKEAMLFFSRIESQLKALAVSSSTSDG---CELVGQSECS 214
           QFMEAYCEML KYEQELSKPFKEAM+F   +E Q K+L++SS +S G     +   +  S
Sbjct: 184 QFMEAYCEMLVKYEQELSKPFKEAMVFLQHVECQFKSLSLSSPSSLGYGEAAIERNNNGS 243

Query: 215 KEVEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQELLDW 274
            E EVDMN  ++DPQAE++ELKGQLLRKYSGYLGSLKQEF+KK+K GKLPKEARQ+LLDW
Sbjct: 244 SEEEVDMNNEFVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDW 303

Query: 275 WSRHYKWPYPSEAQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHP-HY 334
           WSRHYKWPYPSE QK+ALAESTGLD KQINNWFINQRKRHWKPSEDMQFVVMDA HP HY
Sbjct: 304 WSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPLHY 363

Query: 335 YLDNVICNNPFSMD 341
           ++ NV+  NPF +D
Sbjct: 364 FMGNVL-GNPFPID 376

[Close]
BLAST of MC04g0223 vs. ExPASy Swiss-Prot
Match: O65034 (Homeobox protein knotted-1-like 12 OS=Oryza sativa subsp. indica OX=39946 GN=OSH15 PE=2 SV=2)

HSP 1 Score: 280.0 bits (715), Expect = 3.6e-74
Identity = 149/244 (61.07%), Postives = 173/244 (70.90%), Query Frame = 0 

Query: 93  SCRAKIMAHPLFPRLLAAYVNCQKVGAPPEVVARLEQACAVAGGSCRATARGDDPALDQF 152
           S +AKIMAHP +  LLAAY++CQKVGAPPEV+ RL    A             DP LDQF
Sbjct: 90  SIKAKIMAHPQYSALLAAYLDCQKVGAPPEVLERLTATAAKLDARPPGRHDARDPELDQF 149

Query: 153 MEAYCEMLSKYEQELSKPFKEAMLFFSRIESQLKALA--VSSSTSDGCELV---GQSECS 212
           MEAYC ML+KY +EL++P  EAM F  R+ESQL  +A       +    L+   G+SEC 
Sbjct: 150 MEAYCNMLAKYREELTRPIDEAMEFLKRVESQLDTIAGGAHGGGAGSARLLLADGKSECV 209

Query: 213 KEVEVDMN----EN---YIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEA 272
              E DM+    EN    IDP+AE+KELK QLL+KYSGYL SL+QEF KKKK GKLPKEA
Sbjct: 210 GSSEDDMDPSGRENEPPEIDPRAEDKELKFQLLKKYSGYLSSLRQEFSKKKKKGKLPKEA 269

Query: 273 RQELLDWWSRHYKWPYPSEAQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMD 325
           RQ+LL WW  HYKWPYPSE +K+ALAESTGLD KQINNWFINQRKRHWKPSEDM FV+M+
Sbjct: 270 RQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHWKPSEDMPFVMME 329

[Close]
BLAST of MC04g0223 vs. NCBI nr
Match: XP_022136261.1 (homeobox protein SBH1-like [Momordica charantia])

HSP 1 Score: 681 bits (1757), Expect = 7.55e-247
Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 0 

Query: 1   MERGGSSGSSGGSSFMAGFGENNNNSSSSGISSMVMMSSSSNNNSQILDNNNNNVNNKLF 60
           MERGGSSGSSGGSSFMAGFGENNNNSSSSGISSMVMMSSSSNNNSQILDNNNNNVNNKLF
Sbjct: 1   MERGGSSGSSGGSSFMAGFGENNNNSSSSGISSMVMMSSSSNNNSQILDNNNNNVNNKLF 60

Query: 61  VPLSWSATSTAQRVSAFVPQPPHNNSNHNLQNSCRAKIMAHPLFPRLLAAYVNCQKVGAP 120
           VPLSWSATSTAQRVSAFVPQPPHNNSNHNLQNSCRAKIMAHPLFPRLLAAYVNCQKVGAP
Sbjct: 61  VPLSWSATSTAQRVSAFVPQPPHNNSNHNLQNSCRAKIMAHPLFPRLLAAYVNCQKVGAP 120

Query: 121 PEVVARLEQACAVAGGSCRATARGDDPALDQFMEAYCEMLSKYEQELSKPFKEAMLFFSR 180
           PEVVARLEQACAVAGGSCRATARGDDPALDQFMEAYCEMLSKYEQELSKPFKEAMLFFSR
Sbjct: 121 PEVVARLEQACAVAGGSCRATARGDDPALDQFMEAYCEMLSKYEQELSKPFKEAMLFFSR 180

Query: 181 IESQLKALAVSSSTSDGCELVGQSECSKEVEVDMNENYIDPQAEEKELKGQLLRKYSGYL 240
           IESQLKALAVSSSTSDGCELVGQSECSKEVEVDMNENYIDPQAEEKELKGQLLRKYSGYL
Sbjct: 181 IESQLKALAVSSSTSDGCELVGQSECSKEVEVDMNENYIDPQAEEKELKGQLLRKYSGYL 240

Query: 241 GSLKQEFLKKKKNGKLPKEARQELLDWWSRHYKWPYPSEAQKVALAESTGLDLKQINNWF 300
           GSLKQEFLKKKKNGKLPKEARQELLDWWSRHYKWPYPSEAQKVALAESTGLDLKQINNWF
Sbjct: 241 GSLKQEFLKKKKNGKLPKEARQELLDWWSRHYKWPYPSEAQKVALAESTGLDLKQINNWF 300

Query: 301 INQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNNPFSMDCSSTLF 346
           INQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNNPFSMDCSSTLF
Sbjct: 301 INQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNNPFSMDCSSTLF 346

[Close]
BLAST of MC04g0223 vs. NCBI nr
Match: XP_038887406.1 (homeobox protein knotted-1-like LET6 [Benincasa hispida] >XP_038887407.1 homeobox protein knotted-1-like LET6 [Benincasa hispida])

HSP 1 Score: 517 bits (1331), Expect = 5.31e-182
Identity = 282/358 (78.77%), Postives = 306/358 (85.47%), Query Frame = 0 

Query: 1   MERGGSSGSSGGSSFMAGFGE-----NNNNSSSSGISSMVMMSSSSNNNSQILDNNNNNV 60
           ME GGSSGSS   SFMA         NNNNS++     M+MM +S  NN Q LD+NNNN 
Sbjct: 1   MEGGGSSGSS--CSFMATCNSTTTTTNNNNSNTP----MMMMFNS--NNPQTLDDNNNN- 60

Query: 61  NNKLFVPLSWSATST-------AQRVSAFVPQPPHNNSNHNLQNSCRAKIMAHPLFPRLL 120
             K+F+PLSWS++++        QRVSAFVP P  NN++    ++ +AKIMAHPLFPRLL
Sbjct: 61  --KMFLPLSWSSSTSNNNNNAQTQRVSAFVPHPHTNNNDVLTTSTSKAKIMAHPLFPRLL 120

Query: 121 AAYVNCQKVGAPPEVVARLEQACAVAGGSCRATARGDDPALDQFMEAYCEMLSKYEQELS 180
           AAYVNCQKVGAPPEVVARLEQACAVA GSCRA  RGDDPALDQFMEAYCEML+KYEQEL+
Sbjct: 121 AAYVNCQKVGAPPEVVARLEQACAVATGSCRAAGRGDDPALDQFMEAYCEMLTKYEQELT 180

Query: 181 KPFKEAMLFFSRIESQLKALAVSSSTSDGCELVGQSECSKEVEVDMNENYIDPQAEEKEL 240
           KPF+EAMLFFSRIESQLKALAV S   DG ELV Q+ECSKE+EVDMN+NYIDPQAEEKEL
Sbjct: 181 KPFREAMLFFSRIESQLKALAVPS---DGFELVRQNECSKEIEVDMNDNYIDPQAEEKEL 240

Query: 241 KGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQELLDWWSRHYKWPYPSEAQKVALAES 300
           KGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQ+LLDWWSRHYKWPYPSE+QKVALAES
Sbjct: 241 KGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAES 300

Query: 301 TGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNNPFSMDCSSTLF 346
           TGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICN PFSMDCSSTLF
Sbjct: 301 TGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICN-PFSMDCSSTLF 343

[Close]
BLAST of MC04g0223 vs. NCBI nr
Match: XP_004144513.1 (homeobox protein knotted-1-like LET6 [Cucumis sativus] >KGN43492.1 hypothetical protein Csa_020230 [Cucumis sativus])

HSP 1 Score: 503 bits (1296), Expect = 1.45e-176
Identity = 270/357 (75.63%), Postives = 298/357 (83.47%), Query Frame = 0 

Query: 1   MERGGSSGSSGGSSFMAGFGENNNNSSSSGISSMVMMSSSSNNNSQILDNNNNNVNNKLF 60
           ME GGSSGSS   SFMA      NN++S+  S M+MM + ++NN Q  DN       K+F
Sbjct: 1   MEGGGSSGSS--CSFMATCNSTTNNNNSNNTSMMMMMINKTHNNPQTFDN-------KMF 60

Query: 61  VPLSWSATS----------TAQRVSAFVPQPPHNNSNHNL---QNSCRAKIMAHPLFPRL 120
           +PLSWS+++          T   +SAF+PQP  NNSN ++    ++ +AKIMAHPLFPRL
Sbjct: 61  LPLSWSSSTSNNNNNNNVQTQTPLSAFLPQPHTNNSNDHVVPPTSTSKAKIMAHPLFPRL 120

Query: 121 LAAYVNCQKVGAPPEVVARLEQACAVAGGSCRATARGDDPALDQFMEAYCEMLSKYEQEL 180
           L AYVNCQKVGAPPEVVARLEQACAVA GSCRA   G+DPALDQFMEAYCEML+KYEQEL
Sbjct: 121 LTAYVNCQKVGAPPEVVARLEQACAVATGSCRAAGHGNDPALDQFMEAYCEMLTKYEQEL 180

Query: 181 SKPFKEAMLFFSRIESQLKALAVSSSTSDGCELVGQSECSKEVEVDMNENYIDPQAEEKE 240
           +KPFKEAMLFFSRIESQLKA AVSS   DG ELVGQ+ECSKE+EVDMNENYIDPQAE KE
Sbjct: 181 TKPFKEAMLFFSRIESQLKAEAVSS---DGFELVGQNECSKEIEVDMNENYIDPQAEVKE 240

Query: 241 LKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQELLDWWSRHYKWPYPSEAQKVALAE 300
           LKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQ+LLDWWSRHYKWPYPSE+QKVALAE
Sbjct: 241 LKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAE 300

Query: 301 STGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNNPFSMDCSST 344
           STGLDLKQINNWFINQRKRHWKP+EDMQFVVMDA HPHYYLDNVICN PFSMDCSS+
Sbjct: 301 STGLDLKQINNWFINQRKRHWKPTEDMQFVVMDAGHPHYYLDNVICN-PFSMDCSSS 344

[Close]
BLAST of MC04g0223 vs. NCBI nr
Match: XP_008455471.1 (PREDICTED: homeobox protein knotted-1-like LET6 [Cucumis melo])

HSP 1 Score: 497 bits (1280), Expect = 3.41e-174
Identity = 268/359 (74.65%), Postives = 296/359 (82.45%), Query Frame = 0 

Query: 1   MERGGSSGSSGGSSFMAGFGENNNNSSSSGISSMVMMSSSSNNNSQILDNNNNNVNNKLF 60
           ME GGSSGSS   SFMA      NN++S+  S M+MM + +NNN Q  DN       K+F
Sbjct: 1   MEGGGSSGSS--CSFMATCNSTTNNNNSNNTSMMMMMINKTNNNPQTFDN-------KMF 60

Query: 61  VPLSWSATS----------TAQRVSAFVPQPPHNNSN-HNLQ--NSCRAKIMAHPLFPRL 120
           +PLSWS+++          T   +S F+PQP  NNSN H+    ++ +AKIMAHPLFPRL
Sbjct: 61  LPLSWSSSTSNNNNNNNVQTQTPLSTFLPQPHTNNSNDHDAPPTSTSKAKIMAHPLFPRL 120

Query: 121 LAAYVNCQKVGAPPEVVARLEQACAVAGGSCRATARGDDPALDQFMEAYCEMLSKYEQEL 180
           L AYVNCQKVGAPPEVVARLEQACAVA GSCRA   G+DPALDQFMEAYCEML+KYEQEL
Sbjct: 121 LTAYVNCQKVGAPPEVVARLEQACAVATGSCRAAGHGNDPALDQFMEAYCEMLTKYEQEL 180

Query: 181 SKPFKEAMLFFSRIESQLKALAVSSSTSDGCELVGQSECSKEVEVDMNENYIDPQAEEKE 240
           +KPFKEAMLFFSRIESQLKA AVSS   DG +LV Q++CSKE+EVDMNENYIDPQAE KE
Sbjct: 181 TKPFKEAMLFFSRIESQLKAQAVSS---DGFDLVAQNDCSKEIEVDMNENYIDPQAEVKE 240

Query: 241 LKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQELLDWWSRHYKWPYPSEAQKVALAE 300
           LKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQ+LLDWWSRHYKWPYPSE+QKVALAE
Sbjct: 241 LKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAE 300

Query: 301 STGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNNPFSMDCSSTLF 346
           STGLDLKQINNWFINQRKRHWKP+EDMQFVVMD  HPHYYLDNVICN PFSMDCSS+ F
Sbjct: 301 STGLDLKQINNWFINQRKRHWKPTEDMQFVVMDTGHPHYYLDNVICN-PFSMDCSSSHF 346

[Close]
BLAST of MC04g0223 vs. NCBI nr
Match: KAG7022846.1 (Homeobox protein SBH1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 481 bits (1238), Expect = 1.11e-168
Identity = 244/301 (81.06%), Postives = 261/301 (86.71%), Query Frame = 0 

Query: 47  ILDNNNNNVNNKLFVPLSWSATSTAQRVSAFVPQPPHNNSNHNLQNSCRAKIMAHPLFPR 106
           + D+NNNN NN           S +     F+P   H         +CRAK+MAHPLFPR
Sbjct: 7   MFDHNNNNDNNN---------DSDSNNRKMFLPYNDH-------VETCRAKLMAHPLFPR 66

Query: 107 LLAAYVNCQKVGAPPEVVARLEQACAVAGGSCRATARGDDPALDQFMEAYCEMLSKYEQE 166
           LLA+YVNCQKVGAPP+VVARLEQAC VA G+CR  ARGDDP LDQFMEAYCEMLSKYEQE
Sbjct: 67  LLASYVNCQKVGAPPDVVARLEQACTVAAGNCRTVARGDDPGLDQFMEAYCEMLSKYEQE 126

Query: 167 LSKPFKEAMLFFSRIESQLKALAVSSSTSDGCELVGQSECSKEVEV-DMNENYIDPQAEE 226
           L+KPFKEAM+FFSRIESQLKALA SSS+SDG ELVGQ+ECSKE+EV DMNENYIDPQAEE
Sbjct: 127 LTKPFKEAMVFFSRIESQLKALAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEE 186

Query: 227 KELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQELLDWWSRHYKWPYPSEAQKVAL 286
           KELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQ+LLDWWSRHYKWPYPSE+QKVAL
Sbjct: 187 KELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVAL 246

Query: 287 AESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNNPFSMDCSSTL 346
           AESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDN+ICN PFSMDCSSTL
Sbjct: 247 AESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNLICN-PFSMDCSSTL 290

[Close]
BLAST of MC04g0223 vs. ExPASy TrEMBL
Match: A0A6J1C313 (homeobox protein SBH1-like OS=Momordica charantia OX=3673 GN=LOC111008000 PE=3 SV=1)

HSP 1 Score: 681 bits (1757), Expect = 3.66e-247
Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 0 

Query: 1   MERGGSSGSSGGSSFMAGFGENNNNSSSSGISSMVMMSSSSNNNSQILDNNNNNVNNKLF 60
           MERGGSSGSSGGSSFMAGFGENNNNSSSSGISSMVMMSSSSNNNSQILDNNNNNVNNKLF
Sbjct: 1   MERGGSSGSSGGSSFMAGFGENNNNSSSSGISSMVMMSSSSNNNSQILDNNNNNVNNKLF 60

Query: 61  VPLSWSATSTAQRVSAFVPQPPHNNSNHNLQNSCRAKIMAHPLFPRLLAAYVNCQKVGAP 120
           VPLSWSATSTAQRVSAFVPQPPHNNSNHNLQNSCRAKIMAHPLFPRLLAAYVNCQKVGAP
Sbjct: 61  VPLSWSATSTAQRVSAFVPQPPHNNSNHNLQNSCRAKIMAHPLFPRLLAAYVNCQKVGAP 120

Query: 121 PEVVARLEQACAVAGGSCRATARGDDPALDQFMEAYCEMLSKYEQELSKPFKEAMLFFSR 180
           PEVVARLEQACAVAGGSCRATARGDDPALDQFMEAYCEMLSKYEQELSKPFKEAMLFFSR
Sbjct: 121 PEVVARLEQACAVAGGSCRATARGDDPALDQFMEAYCEMLSKYEQELSKPFKEAMLFFSR 180

Query: 181 IESQLKALAVSSSTSDGCELVGQSECSKEVEVDMNENYIDPQAEEKELKGQLLRKYSGYL 240
           IESQLKALAVSSSTSDGCELVGQSECSKEVEVDMNENYIDPQAEEKELKGQLLRKYSGYL
Sbjct: 181 IESQLKALAVSSSTSDGCELVGQSECSKEVEVDMNENYIDPQAEEKELKGQLLRKYSGYL 240

Query: 241 GSLKQEFLKKKKNGKLPKEARQELLDWWSRHYKWPYPSEAQKVALAESTGLDLKQINNWF 300
           GSLKQEFLKKKKNGKLPKEARQELLDWWSRHYKWPYPSEAQKVALAESTGLDLKQINNWF
Sbjct: 241 GSLKQEFLKKKKNGKLPKEARQELLDWWSRHYKWPYPSEAQKVALAESTGLDLKQINNWF 300

Query: 301 INQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNNPFSMDCSSTLF 346
           INQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNNPFSMDCSSTLF
Sbjct: 301 INQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNNPFSMDCSSTLF 346

[Close]
BLAST of MC04g0223 vs. ExPASy TrEMBL
Match: A0A0A0K5G5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041370 PE=3 SV=1)

HSP 1 Score: 503 bits (1296), Expect = 7.02e-177
Identity = 270/357 (75.63%), Postives = 298/357 (83.47%), Query Frame = 0 

Query: 1   MERGGSSGSSGGSSFMAGFGENNNNSSSSGISSMVMMSSSSNNNSQILDNNNNNVNNKLF 60
           ME GGSSGSS   SFMA      NN++S+  S M+MM + ++NN Q  DN       K+F
Sbjct: 1   MEGGGSSGSS--CSFMATCNSTTNNNNSNNTSMMMMMINKTHNNPQTFDN-------KMF 60

Query: 61  VPLSWSATS----------TAQRVSAFVPQPPHNNSNHNL---QNSCRAKIMAHPLFPRL 120
           +PLSWS+++          T   +SAF+PQP  NNSN ++    ++ +AKIMAHPLFPRL
Sbjct: 61  LPLSWSSSTSNNNNNNNVQTQTPLSAFLPQPHTNNSNDHVVPPTSTSKAKIMAHPLFPRL 120

Query: 121 LAAYVNCQKVGAPPEVVARLEQACAVAGGSCRATARGDDPALDQFMEAYCEMLSKYEQEL 180
           L AYVNCQKVGAPPEVVARLEQACAVA GSCRA   G+DPALDQFMEAYCEML+KYEQEL
Sbjct: 121 LTAYVNCQKVGAPPEVVARLEQACAVATGSCRAAGHGNDPALDQFMEAYCEMLTKYEQEL 180

Query: 181 SKPFKEAMLFFSRIESQLKALAVSSSTSDGCELVGQSECSKEVEVDMNENYIDPQAEEKE 240
           +KPFKEAMLFFSRIESQLKA AVSS   DG ELVGQ+ECSKE+EVDMNENYIDPQAE KE
Sbjct: 181 TKPFKEAMLFFSRIESQLKAEAVSS---DGFELVGQNECSKEIEVDMNENYIDPQAEVKE 240

Query: 241 LKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQELLDWWSRHYKWPYPSEAQKVALAE 300
           LKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQ+LLDWWSRHYKWPYPSE+QKVALAE
Sbjct: 241 LKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAE 300

Query: 301 STGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNNPFSMDCSST 344
           STGLDLKQINNWFINQRKRHWKP+EDMQFVVMDA HPHYYLDNVICN PFSMDCSS+
Sbjct: 301 STGLDLKQINNWFINQRKRHWKPTEDMQFVVMDAGHPHYYLDNVICN-PFSMDCSSS 344

[Close]
BLAST of MC04g0223 vs. ExPASy TrEMBL
Match: A0A1S3C0Z5 (homeobox protein knotted-1-like LET6 OS=Cucumis melo OX=3656 GN=LOC103495627 PE=3 SV=1)

HSP 1 Score: 497 bits (1280), Expect = 1.65e-174
Identity = 268/359 (74.65%), Postives = 296/359 (82.45%), Query Frame = 0 

Query: 1   MERGGSSGSSGGSSFMAGFGENNNNSSSSGISSMVMMSSSSNNNSQILDNNNNNVNNKLF 60
           ME GGSSGSS   SFMA      NN++S+  S M+MM + +NNN Q  DN       K+F
Sbjct: 1   MEGGGSSGSS--CSFMATCNSTTNNNNSNNTSMMMMMINKTNNNPQTFDN-------KMF 60

Query: 61  VPLSWSATS----------TAQRVSAFVPQPPHNNSN-HNLQ--NSCRAKIMAHPLFPRL 120
           +PLSWS+++          T   +S F+PQP  NNSN H+    ++ +AKIMAHPLFPRL
Sbjct: 61  LPLSWSSSTSNNNNNNNVQTQTPLSTFLPQPHTNNSNDHDAPPTSTSKAKIMAHPLFPRL 120

Query: 121 LAAYVNCQKVGAPPEVVARLEQACAVAGGSCRATARGDDPALDQFMEAYCEMLSKYEQEL 180
           L AYVNCQKVGAPPEVVARLEQACAVA GSCRA   G+DPALDQFMEAYCEML+KYEQEL
Sbjct: 121 LTAYVNCQKVGAPPEVVARLEQACAVATGSCRAAGHGNDPALDQFMEAYCEMLTKYEQEL 180

Query: 181 SKPFKEAMLFFSRIESQLKALAVSSSTSDGCELVGQSECSKEVEVDMNENYIDPQAEEKE 240
           +KPFKEAMLFFSRIESQLKA AVSS   DG +LV Q++CSKE+EVDMNENYIDPQAE KE
Sbjct: 181 TKPFKEAMLFFSRIESQLKAQAVSS---DGFDLVAQNDCSKEIEVDMNENYIDPQAEVKE 240

Query: 241 LKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQELLDWWSRHYKWPYPSEAQKVALAE 300
           LKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQ+LLDWWSRHYKWPYPSE+QKVALAE
Sbjct: 241 LKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAE 300

Query: 301 STGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNNPFSMDCSSTLF 346
           STGLDLKQINNWFINQRKRHWKP+EDMQFVVMD  HPHYYLDNVICN PFSMDCSS+ F
Sbjct: 301 STGLDLKQINNWFINQRKRHWKPTEDMQFVVMDTGHPHYYLDNVICN-PFSMDCSSSHF 346

[Close]
BLAST of MC04g0223 vs. ExPASy TrEMBL
Match: A0A6J1JKT8 (homeobox protein knotted-1-like LET6 OS=Cucurbita maxima OX=3661 GN=LOC111486097 PE=3 SV=1)

HSP 1 Score: 479 bits (1233), Expect = 2.68e-168
Identity = 238/278 (85.61%), Postives = 253/278 (91.01%), Query Frame = 0 

Query: 83  HNNSNHNLQNS-------------CRAKIMAHPLFPRLLAAYVNCQKVGAPPEVVARLEQ 142
           HNN+N +  N+             CRAK+MAHPLFPRLLA+YVNCQKVGAPP+VVARLEQ
Sbjct: 10  HNNNNDSDSNNKKMFLPYNDHVQTCRAKLMAHPLFPRLLASYVNCQKVGAPPDVVARLEQ 69

Query: 143 ACAVAGGSCRATARGDDPALDQFMEAYCEMLSKYEQELSKPFKEAMLFFSRIESQLKALA 202
           AC VA G+CR  ARGDDP LDQFMEAYCEMLSKYEQEL+KPFKEAM+FFSRIESQLKALA
Sbjct: 70  ACTVAAGNCRTVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKALA 129

Query: 203 VSSSTSDGCELVGQSECSKEVEV-DMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFL 262
            SSS+SDG ELVGQ+ECSKE+EV DMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFL
Sbjct: 130 ASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFL 189

Query: 263 KKKKNGKLPKEARQELLDWWSRHYKWPYPSEAQKVALAESTGLDLKQINNWFINQRKRHW 322
           KKKKNGKLPKEARQ+LLDWWSRHYKWPYPSE+QKVALAESTGLDLKQINNWFINQRKRHW
Sbjct: 190 KKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHW 249

Query: 323 KPSEDMQFVVMDAAHPHYYLDNVICNNPFSMDCSSTLF 346
           KPSEDMQFVVMDAAHPHYYLDN+ICN PFSMDCSSTLF
Sbjct: 250 KPSEDMQFVVMDAAHPHYYLDNLICN-PFSMDCSSTLF 286

[Close]
BLAST of MC04g0223 vs. ExPASy TrEMBL
Match: A0A6J1ERR4 (homeobox protein knotted-1-like LET6 OS=Cucurbita moschata OX=3662 GN=LOC111437123 PE=3 SV=1)

HSP 1 Score: 478 bits (1229), Expect = 1.17e-167
Identity = 238/280 (85.00%), Postives = 252/280 (90.00%), Query Frame = 0 

Query: 83  HNNSNHNLQNS---------------CRAKIMAHPLFPRLLAAYVNCQKVGAPPEVVARL 142
           HNN N+N  +S               CR K+MAHPLFPRLLA+YVNCQKVGAPP+VVARL
Sbjct: 10  HNNDNNNDSDSNNKKMFLPYNDHVQSCRDKLMAHPLFPRLLASYVNCQKVGAPPDVVARL 69

Query: 143 EQACAVAGGSCRATARGDDPALDQFMEAYCEMLSKYEQELSKPFKEAMLFFSRIESQLKA 202
           EQAC VA G+CR  ARGDDP LDQFMEAYCEMLSKYEQEL+KPFKEAM+FFSRIESQLKA
Sbjct: 70  EQACTVAAGNCRTVARGDDPGLDQFMEAYCEMLSKYEQELTKPFKEAMVFFSRIESQLKA 129

Query: 203 LAVSSSTSDGCELVGQSECSKEVEV-DMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQE 262
           LA SSS+SDG ELVGQ+ECSKE+EV DMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQE
Sbjct: 130 LAASSSSSDGYELVGQNECSKEIEVVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQE 189

Query: 263 FLKKKKNGKLPKEARQELLDWWSRHYKWPYPSEAQKVALAESTGLDLKQINNWFINQRKR 322
           FLKKKKNGKLPKEARQ+LLDWWSRHYKWPYPSE+QKVALAESTGLDLKQINNWFINQRKR
Sbjct: 190 FLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKR 249

Query: 323 HWKPSEDMQFVVMDAAHPHYYLDNVICNNPFSMDCSSTLF 346
           HWKPSEDMQFVVMDAAHPHYYLDN+ICN PFSMDCSSTLF
Sbjct: 250 HWKPSEDMQFVVMDAAHPHYYLDNLICN-PFSMDCSSTLF 288

[Close]
BLAST of MC04g0223 vs. TAIR 10
Match: AT1G62360.1 (KNOX/ELK homeobox transcription factor )

HSP 1 Score: 364.8 bits (935), Expect = 7.8e-101
Identity = 185/269 (68.77%), Postives = 214/269 (79.55%), Query Frame = 0 

Query: 86  SNHNLQNSCRAKIMAHPLFPRLLAAYVNCQKVGAPPEVVARLEQACAVAGGSCRAT---- 145
           S+ +   S +AKIMAHP + RLLAAYVNCQKVGAPPEVVARLE+AC+ A  +  +     
Sbjct: 113 SSSSSSASVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACSSAAAAAASMGPTG 172

Query: 146 ARGDDPALDQFMEAYCEMLSKYEQELSKPFKEAMLFFSRIESQLKALAVSSSTS----DG 205
             G+DP LDQFMEAYCEML KYEQELSKPFKEAM+F  R+E Q K+L++SS +S      
Sbjct: 173 CLGEDPGLDQFMEAYCEMLVKYEQELSKPFKEAMVFLQRVECQFKSLSLSSPSSFSGYGE 232

Query: 206 CELVGQSECSKEVEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLP 265
             +   +  S E EVDMN  ++DPQAE++ELKGQLLRKYSGYLGSLKQEF+KK+K GKLP
Sbjct: 233 TAIDRNNNGSSEEEVDMNNEFVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLP 292

Query: 266 KEARQELLDWWSRHYKWPYPSEAQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFV 325
           KEARQ+LLDWWSRHYKWPYPSE QK+ALAESTGLD KQINNWFINQRKRHWKPSEDMQFV
Sbjct: 293 KEARQQLLDWWSRHYKWPYPSEQQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFV 352

Query: 326 VMDAAHPHYYLDNVICNNPFSMD-CSSTL 346
           VMDA HPH+Y  + +  NPF MD  SST+
Sbjct: 353 VMDATHPHHYFMDNVLGNPFPMDHISSTM 381

[Close]
BLAST of MC04g0223 vs. TAIR 10
Match: AT4G08150.1 (KNOTTED-like from Arabidopsis thaliana )

HSP 1 Score: 259.6 bits (662), Expect = 3.5e-69
Identity = 170/356 (47.75%), Postives = 223/356 (62.64%), Query Frame = 0 

Query: 2   ERGGSSGSSGGSSFMAGFGENNNNSSSSGISSMVMMSS---SSNNNSQILDNNNNNVNNK 61
           +   ++ ++  S++  G+   NNN+          MSS    +  N    D++  N NN 
Sbjct: 33  DTNNNNNNNNSSNYGPGYNNTNNNNHHHQHMLFPHMSSLLPQTTENCFRSDHDQPNNNNN 92

Query: 62  LFVPLSWSATSTAQRVSAFV-----PQPPHNNSNHNLQN--SCRAKIMAHPLFPRLLAAY 121
             V  S +++S     S  +      Q  +NN+N N+ +  + +AKI+AHP +  LL AY
Sbjct: 93  PSVK-SEASSSRINHYSMLMRAIHNTQEANNNNNDNVSDVEAMKAKIIAHPHYSTLLQAY 152

Query: 122 VNCQKVGAPPEVVARLEQA-----CAVAGGSCRATARGDDPALDQFMEAYCEMLSKYEQE 181
           ++CQK+GAPP+VV R+  A           +   +A   DP LDQFMEAYC+ML KY +E
Sbjct: 153 LDCQKIGAPPDVVDRITAARQDFEARQQRSTPSVSASSRDPELDQFMEAYCDMLVKYREE 212

Query: 182 LSKPFKEAMLFFSRIESQLKALAVSS----STSDG-CELVGQSECSKE----VEVDMNEN 241
           L++P +EAM F  RIESQL  L  S     +  DG  + +G S+  +E     E ++ E 
Sbjct: 213 LTRPIQEAMEFIRRIESQLSMLCQSPIHILNNPDGKSDNMGSSDEEQENNSGGETELPE- 272

Query: 242 YIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQELLDWWSRHYKWPYP 301
            IDP+AE++ELK  LL+KYSGYL SLKQE  KKKK GKLPKEARQ+LL WW  HYKWPYP
Sbjct: 273 -IDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLTWWELHYKWPYP 332

Query: 302 SEAQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDA-AHPHY---YLD 330
           SE++KVALAESTGLD KQINNWFINQRKRHWKPSEDMQF+VMD   HPH+   Y+D
Sbjct: 333 SESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLQHPHHAALYMD 385

[Close]
BLAST of MC04g0223 vs. TAIR 10
Match: AT1G23380.1 (KNOTTED1-like homeobox gene 6 )

HSP 1 Score: 240.4 bits (612), Expect = 2.2e-63
Identity = 127/277 (45.85%), Postives = 177/277 (63.90%), Query Frame = 0 

Query: 63  LSWSATSTAQRVSAFVPQPPHNNSNHNLQNSCRAKIMAHPLFPRLLAAYVNCQKVGAPPE 122
           LS + ++ +   ++  P+   N+ N +L    +AKI  HP +PRLL AY++CQKVGAPPE
Sbjct: 55  LSVAVSALSSEAASIAPEIRRNDDNVSL-TVIKAKIACHPSYPRLLQAYIDCQKVGAPPE 114

Query: 123 VVARLEQ--------ACAVAGGSCRATARGDDPALDQFMEAYCEMLSKYEQELSKPFKEA 182
           +   LE+           V   SC     G DP LD+FME YC++L KY+ +L++PF EA
Sbjct: 115 IACLLEEIQRESDVYKQEVVPSSC----FGADPELDEFMETYCDILVKYKSDLARPFDEA 174

Query: 183 MLFFSRIESQLKALAVSSSTSDGCELVGQSECSKEVEVDMNENYID--PQAEEKELKGQL 242
             F ++IE QL+ L     ++ G    G     +E+    +E   D   + E+++LK +L
Sbjct: 175 TCFLNKIEMQLRNLCTGVESARGVSEDGVISSDEELSGGDHEVAEDGRQRCEDRDLKDRL 234

Query: 243 LRKYSGYLGSLKQEFLKKKKNGKLPKEARQELLDWWSRHYKWPYPSEAQKVALAESTGLD 302
           LRK+   + +LK EF KKKK GKLP+EARQ LLDWW+ HYKWPYP+E  K+ALA++TGLD
Sbjct: 235 LRKFGSRISTLKLEFSKKKKKGKLPREARQALLDWWNLHYKWPYPTEGDKIALADATGLD 294

Query: 303 LKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLD 330
            KQINNWFINQRKRHWKPSE+M F +MD +   ++ +
Sbjct: 295 QKQINNWFINQRKRHWKPSENMPFAMMDDSSGSFFTE 326

[Close]
BLAST of MC04g0223 vs. TAIR 10
Match: AT1G23380.2 (KNOTTED1-like homeobox gene 6 )

HSP 1 Score: 235.3 bits (599), Expect = 7.2e-62
Identity = 127/279 (45.52%), Postives = 177/279 (63.44%), Query Frame = 0 

Query: 63  LSWSATSTAQRVSAFVPQPPHNNSNHNLQNSCRAKIMAHPLFPRLLAAYVNCQK--VGAP 122
           LS + ++ +   ++  P+   N+ N +L    +AKI  HP +PRLL AY++CQK  VGAP
Sbjct: 55  LSVAVSALSSEAASIAPEIRRNDDNVSL-TVIKAKIACHPSYPRLLQAYIDCQKKQVGAP 114

Query: 123 PEVVARLEQ--------ACAVAGGSCRATARGDDPALDQFMEAYCEMLSKYEQELSKPFK 182
           PE+   LE+           V   SC     G DP LD+FME YC++L KY+ +L++PF 
Sbjct: 115 PEIACLLEEIQRESDVYKQEVVPSSC----FGADPELDEFMETYCDILVKYKSDLARPFD 174

Query: 183 EAMLFFSRIESQLKALAVSSSTSDGCELVGQSECSKEVEVDMNENYID--PQAEEKELKG 242
           EA  F ++IE QL+ L     ++ G    G     +E+    +E   D   + E+++LK 
Sbjct: 175 EATCFLNKIEMQLRNLCTGVESARGVSEDGVISSDEELSGGDHEVAEDGRQRCEDRDLKD 234

Query: 243 QLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQELLDWWSRHYKWPYPSEAQKVALAESTG 302
           +LLRK+   + +LK EF KKKK GKLP+EARQ LLDWW+ HYKWPYP+E  K+ALA++TG
Sbjct: 235 RLLRKFGSRISTLKLEFSKKKKKGKLPREARQALLDWWNLHYKWPYPTEGDKIALADATG 294

Query: 303 LDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLD 330
           LD KQINNWFINQRKRHWKPSE+M F +MD +   ++ +
Sbjct: 295 LDQKQINNWFINQRKRHWKPSENMPFAMMDDSSGSFFTE 328

[Close]
BLAST of MC04g0223 vs. TAIR 10
Match: AT1G70510.1 (KNOTTED-like from Arabidopsis thaliana 2 )

HSP 1 Score: 230.3 bits (586), Expect = 2.3e-60
Identity = 120/245 (48.98%), Postives = 163/245 (66.53%), Query Frame = 0 

Query: 95  RAKIMAHPLFPRLLAAYVNCQKVGAPPEVVARLEQACA--------VAGGSCRATARGDD 154
           ++KI +HPL+PRLL  Y++CQKVGAP E+   LE+           VA  SC     G D
Sbjct: 70  KSKIASHPLYPRLLQTYIDCQKVGAPMEIACILEEIQRENHVYKRDVAPLSC----FGAD 129

Query: 155 PALDQFMEAYCEMLSKYEQELSKPFKEAMLFFSRIESQLKALAVSSSTSDGCELVGQSEC 214
           P LD+FME YC++L KY+ +L++PF EA  F ++IE QL+ L    +++      G    
Sbjct: 130 PELDEFMETYCDILVKYKTDLARPFDEATTFINKIEMQLQNLCTGPASATALSDDGAVSS 189

Query: 215 SKEVEVDMNENYIDPQ--AEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQEL 274
            +E+  D +    D Q  + +++LK QLLRK+  ++ SLK EF KKKK GKLP+EARQ L
Sbjct: 190 DEELREDDDIAADDSQQRSNDRDLKDQLLRKFGSHISSLKLEFSKKKKKGKLPREARQAL 249

Query: 275 LDWWSRHYKWPYPSEAQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHP 330
           LDWW+ H KWPYP+E  K++LAE TGLD KQINNWFINQRKRHWKPSE+M F +MD ++ 
Sbjct: 250 LDWWNVHNKWPYPTEGDKISLAEETGLDQKQINNWFINQRKRHWKPSENMPFDMMDDSNE 309

The following BLAST results are available for this feature:
BLAST of MC04g0223 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P466081.8e-10258.16Homeobox protein SBH1 OS=Glycine max OX=3847 GN=H1 PE=2 SV=1[more]
Q388741.1e-9968.77Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis thaliana OX=3702 GN=STM PE=1 ... [more]
O222992.5e-9956.99Homeobox protein knotted-1-like LET6 OS=Solanum lycopersicum OX=4081 GN=LET6 PE=... [more]
Q9M6D91.5e-9670.08Homeobox protein SHOOT MERISTEMLESS OS=Brassica oleracea OX=3712 GN=STM PE=2 SV=... [more]
O650343.6e-7461.07Homeobox protein knotted-1-like 12 OS=Oryza sativa subsp. indica OX=39946 GN=OSH... [more]
BLAST of MC04g0223 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022136261.17.55e-247100.00homeobox protein SBH1-like [Momordica charantia][more]
XP_038887406.15.31e-18278.77homeobox protein knotted-1-like LET6 [Benincasa hispida] >XP_038887407.1 homeobo... [more]
XP_004144513.11.45e-17675.63homeobox protein knotted-1-like LET6 [Cucumis sativus] >KGN43492.1 hypothetical ... [more]
XP_008455471.13.41e-17474.65PREDICTED: homeobox protein knotted-1-like LET6 [Cucumis melo][more]
KAG7022846.11.11e-16881.06Homeobox protein SBH1 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of MC04g0223 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C3133.66e-247100.00homeobox protein SBH1-like OS=Momordica charantia OX=3673 GN=LOC111008000 PE=3 S... [more]
A0A0A0K5G57.02e-17775.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041370 PE=3 SV=1[more]
A0A1S3C0Z51.65e-17474.65homeobox protein knotted-1-like LET6 OS=Cucumis melo OX=3656 GN=LOC103495627 PE=... [more]
A0A6J1JKT82.68e-16885.61homeobox protein knotted-1-like LET6 OS=Cucurbita maxima OX=3661 GN=LOC111486097... [more]
A0A6J1ERR41.17e-16785.00homeobox protein knotted-1-like LET6 OS=Cucurbita moschata OX=3662 GN=LOC1114371... [more]
BLAST of MC04g0223 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G62360.17.8e-10168.77KNOX/ELK homeobox transcription factor [more]
AT4G08150.13.5e-6947.75KNOTTED-like from Arabidopsis thaliana [more]
AT1G23380.12.2e-6345.85KNOTTED1-like homeobox gene 6 [more]
AT1G23380.27.2e-6245.52KNOTTED1-like homeobox gene 6 [more]
AT1G70510.12.3e-6048.98KNOTTED-like from Arabidopsis thaliana 2 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005540KNOX1SMARTSM01255KNOX1_2coord: 92..136
e-value: 2.2E-17
score: 73.7
IPR005540KNOX1PFAMPF03790KNOX1coord: 94..132
e-value: 2.2E-20
score: 72.1
IPR005539ELK domainSMARTSM01188ELK_2coord: 227..248
e-value: 1.2E-7
score: 41.4
IPR005539ELK domainPFAMPF03789ELKcoord: 227..248
e-value: 1.5E-10
score: 40.8
IPR005539ELK domainPROSITEPS51213ELKcoord: 227..247
score: 11.173647
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 249..314
e-value: 2.1E-12
score: 57.2
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 247..310
score: 11.96875
IPR001356Homeobox domainCDDcd00086homeodomaincoord: 259..311
e-value: 2.30528E-12
score: 59.1793
IPR005541KNOX2SMARTSM01256KNOX2_2coord: 139..190
e-value: 7.8E-25
score: 98.5
IPR005541KNOX2PFAMPF03791KNOX2coord: 144..188
e-value: 6.2E-22
score: 76.9
NoneNo IPR availableGENE3D1.10.10.60coord: 252..314
e-value: 1.4E-26
score: 93.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR11850HOMEOBOX PROTEIN TRANSCRIPTION FACTORScoord: 24..336
NoneNo IPR availablePANTHERPTHR11850:SF274HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1coord: 24..336
IPR008422Homeobox KN domainPFAMPF05920Homeobox_KNcoord: 267..306
e-value: 3.2E-17
score: 62.2
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 285..308
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 249..324

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC04g0223.1MC04g0223.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription by RNA polymerase II
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function GO:0003677 DNA binding