MC04g0074 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g0074
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Bromo domain-containing protein
Location	MC04: 561317 .. 561619 (-)
RNA-Seq Expression	MC04g0074
Synteny	MC04g0074

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAGTAACAATGTTGAAAGCAAGGTTCGCCGATACGATCTTGAAAGCACAGCGGCAGCTTTGCATCAATGATGTGCCATGTGCTGTGAAGCCGGATGTGATTGAAAAATTAGTTGTTAAGCCATCTACAATTGAAAAACTGAGGCGAGCAGCGCGAGGAGCTTTGGAGGAGGTGGAACGAACTGTGGAGGTGGAAGATAGCCATAAATCCCTCAAAGATTTAGAGCGCCTTTGTAGATTTCCCATACCTTCCTGTGATGGATTCCTCGACACCATGCACTTCTATGGTTTATATTTGAAGAAT

mRNA sequence

CGAGTAACAATGTTGAAAGCAAGGTTCGCCGATACGATCTTGAAAGCACAGCGGCAGCTTTGCATCAATGATGTGCCATGTGCTGTGAAGCCGGATGTGATTGAAAAATTAGTTGTTAAGCCATCTACAATTGAAAAACTGAGGCGAGCAGCGCGAGGAGCTTTGGAGGAGGTGGAACGAACTGTGGAGGTGGAAGATAGCCATAAATCCCTCAAAGATTTAGAGCGCCTTTGTAGATTTCCCATACCTTCCTGTGATGGATTCCTCGACACCATGCACTTCTATGGTTTATATTTGAAGAAT

Coding sequence (CDS)

CGAGTAACAATGTTGAAAGCAAGGTTCGCCGATACGATCTTGAAAGCACAGCGGCAGCTTTGCATCAATGATGTGCCATGTGCTGTGAAGCCGGATGTGATTGAAAAATTAGTTGTTAAGCCATCTACAATTGAAAAACTGAGGCGAGCAGCGCGAGGAGCTTTGGAGGAGGTGGAACGAACTGTGGAGGTGGAAGATAGCCATAAATCCCTCAAAGATTTAGAGCGCCTTTGTAGATTTCCCATACCTTCCTGTGATGGATTCCTCGACACCATGCACTTCTATGGTTTATATTTGAAGAAT

Protein sequence

RVTMLKARFADTILKAQRQLCINDVPCAVKPDVIEKLVVKPSTIEKLRRAARGALEEVERTVEVEDSHKSLKDLERLCRFPIPSCDGFLDTMHFYGLYLKN

Homology

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BLAST of MC04g0074 vs. NCBI nr
Match: KAA0061663.1 (transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa] >TYK21138.1 transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 2.98e-21
Identity = 60/149 (40.27%), Postives = 81/149 (54.36%), Query Frame = 0


Query: 1   RVTMLKARFADTILKAQRQLCIND-VPCAVKP---------------------------- 60
           RV+MLK RFA TILKAQ+QL   + + C V+                             
Sbjct: 48  RVSMLKRRFAGTILKAQQQLSERERIMCNVEKKQPPTLASTPTTMMDERREATREALWRK 107

Query: 61  ------------DVIEKLVVK-------PSTIEKLRRAARGALEEVERTVEVEDSHKSLK 101
                       + + K+V +       PS+ E++R+AAR ALEE+ER+V++EDSHKS+K
Sbjct: 108 KEPTTTPTKNSNEELRKVVQRAFSPTPIPSSTEEIRKAARRALEELERSVDIEDSHKSVK 167

[Close]

BLAST of MC04g0074 vs. NCBI nr
Match: KAG6571342.1 (hypothetical protein SDJN03_30257, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.2 bits (204), Expect = 2.33e-17
Identity = 54/128 (42.19%), Postives = 69/128 (53.91%), Query Frame = 0


Query: 1   RVTMLKARFADTILKAQRQLCIN---------------------------DVPCAVKPDV 60
           R  +LK +FA TI KAQR L  N                            +  +++ D 
Sbjct: 58  RAKILKKKFAGTIWKAQRHLSKNRKKVRSEKRREADGKGSEAVDDRRVVPPLAPSLEDDE 117

Query: 61  IEKLVVKPSTIEKLRRAARGALEEVERTVEVEDSHKSLKDLERLCRFPIPSCDGFLDTMH 101
           I  L V+    E++R AAR  LEEVER V V+DSH SL++ ERLC FPIP   GFL+ MH
Sbjct: 118 ITMLKVRR---EEMRAAARRDLEEVERRVVVDDSHASLREYERLCGFPIPYVGGFLNRMH 177

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BLAST of MC04g0074 vs. NCBI nr
Match: VFQ97081.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 57.0 bits (136), Expect = 8.27e-07
Identity = 46/138 (33.33%), Postives = 67/138 (48.55%), Query Frame = 0


Query: 1   RVTMLKARFADTILKA-------------QRQLCINDVPCAVKPDVIEKLVVKPSTI--- 60
           R  ML++RFA+TI KA             Q +  +     A K  + E++    ++    
Sbjct: 393 RAAMLRSRFAETIFKANHKDDVVDPLKLQQEKERLQKQQLAEKARIEEQIKAAEASTRMK 452

Query: 61  ---------EKLRRAARGALEEVERTVEVEDSHKSLKDLERLCRFPIPSCDGFL------ 101
                    EK R AAR ALE++ERTV+++D+ K LKDLE LC+   P CDG L      
Sbjct: 453 AEVELKIQREKEREAARIALEKMERTVDLDDNLKILKDLEGLCQ--CPPCDGLLGNGGGV 512

[Close]

BLAST of MC04g0074 vs. NCBI nr
Match: KAE9601213.1 (putative chromatin remodeler Bromodomain family [Lupinus albus])

HSP 1 Score: 56.6 bits (135), Expect = 1.13e-06
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 1   RVTMLKARFADTILKAQRQLCIN----DVPCAVKPDVIEKLVVKPSTIE-----KLRRAA 60
           R  MLK+RFADTILKAQ++  ++      P  ++ +   ++  +  + E     K R AA
Sbjct: 397 RAAMLKSRFADTILKAQQKTLLDHGDKSGPLKMRHEERARIEAQIKSAEVAARIKAREAA 456

Query: 61  RGALEEVERTVEVEDSHKSLKDLERLC 78
           R ALE++ER+VEVE++ + LK+LE LC
Sbjct: 457 RVALEKMERSVEVENNSQCLKELEMLC 483

[Close]

BLAST of MC04g0074 vs. NCBI nr
Match: KAF1888001.1 (hypothetical protein Lal_00024012 [Lupinus albus])

HSP 1 Score: 56.6 bits (135), Expect = 1.13e-06
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 1   RVTMLKARFADTILKAQRQLCIN----DVPCAVKPDVIEKLVVKPSTIE-----KLRRAA 60
           R  MLK+RFADTILKAQ++  ++      P  ++ +   ++  +  + E     K R AA
Sbjct: 419 RAAMLKSRFADTILKAQQKTLLDHGDKSGPLKMRHEERARIEAQIKSAEVAARIKAREAA 478

Query: 61  RGALEEVERTVEVEDSHKSLKDLERLC 78
           R ALE++ER+VEVE++ + LK+LE LC
Sbjct: 479 RVALEKMERSVEVENNSQCLKELEMLC 505

[Close]

BLAST of MC04g0074 vs. ExPASy TrEMBL
Match: A0A5D3DC97 (Transcription factor GTE9 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75860G00060 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.44e-21
Identity = 60/149 (40.27%), Postives = 81/149 (54.36%), Query Frame = 0


Query: 1   RVTMLKARFADTILKAQRQLCIND-VPCAVKP---------------------------- 60
           RV+MLK RFA TILKAQ+QL   + + C V+                             
Sbjct: 48  RVSMLKRRFAGTILKAQQQLSERERIMCNVEKKQPPTLASTPTTMMDERREATREALWRK 107

Query: 61  ------------DVIEKLVVK-------PSTIEKLRRAARGALEEVERTVEVEDSHKSLK 101
                       + + K+V +       PS+ E++R+AAR ALEE+ER+V++EDSHKS+K
Sbjct: 108 KEPTTTPTKNSNEELRKVVQRAFSPTPIPSSTEEIRKAARRALEELERSVDIEDSHKSVK 167

[Close]

BLAST of MC04g0074 vs. ExPASy TrEMBL
Match: A0A0A0KGL2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421730 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.52e-20
Identity = 63/160 (39.38%), Postives = 81/160 (50.62%), Query Frame = 0


Query: 1   RVTMLKARFADTILKAQRQLCI---------------------------------NDVPC 60
           RV+MLK+RFA TILKAQ+QL                                   N  P 
Sbjct: 54  RVSMLKSRFASTILKAQQQLSESKRKVCNVEKKPPTPALTPMEERREATREASWRNKKPT 113

Query: 61  A----------------------VKPDVIEKLVVKPSTI----EKLRRAARGALEEVERT 101
           A                      V+  +  K+ + P+ I    E++RRAAR ALE++ER+
Sbjct: 114 ATATATATTTPTTNSNEEPTREVVQRALWRKMKLPPTPILTSTEEIRRAARQALEDLERS 173

[Close]

BLAST of MC04g0074 vs. ExPASy TrEMBL
Match: A0A484N6Z8 (Bromo domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS38857 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.01e-07
Identity = 46/138 (33.33%), Postives = 67/138 (48.55%), Query Frame = 0


Query: 1   RVTMLKARFADTILKA-------------QRQLCINDVPCAVKPDVIEKLVVKPSTI--- 60
           R  ML++RFA+TI KA             Q +  +     A K  + E++    ++    
Sbjct: 393 RAAMLRSRFAETIFKANHKDDVVDPLKLQQEKERLQKQQLAEKARIEEQIKAAEASTRMK 452

Query: 61  ---------EKLRRAARGALEEVERTVEVEDSHKSLKDLERLCRFPIPSCDGFL------ 101
                    EK R AAR ALE++ERTV+++D+ K LKDLE LC+   P CDG L      
Sbjct: 453 AEVELKIQREKEREAARIALEKMERTVDLDDNLKILKDLEGLCQ--CPPCDGLLGNGGGV 512

[Close]

BLAST of MC04g0074 vs. ExPASy TrEMBL
Match: A0A6A4PI18 (Putative chromatin remodeler Bromodomain family OS=Lupinus albus OX=3870 GN=Lalb_Chr13g0295421 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.45e-07
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 1   RVTMLKARFADTILKAQRQLCIN----DVPCAVKPDVIEKLVVKPSTIE-----KLRRAA 60
           R  MLK+RFADTILKAQ++  ++      P  ++ +   ++  +  + E     K R AA
Sbjct: 397 RAAMLKSRFADTILKAQQKTLLDHGDKSGPLKMRHEERARIEAQIKSAEVAARIKAREAA 456

Query: 61  RGALEEVERTVEVEDSHKSLKDLERLC 78
           R ALE++ER+VEVE++ + LK+LE LC
Sbjct: 457 RVALEKMERSVEVENNSQCLKELEMLC 483

[Close]

BLAST of MC04g0074 vs. ExPASy TrEMBL
Match: A0A6A5NJM1 (Bromo domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00024012 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.47e-07
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 1   RVTMLKARFADTILKAQRQLCIN----DVPCAVKPDVIEKLVVKPSTIE-----KLRRAA 60
           R  MLK+RFADTILKAQ++  ++      P  ++ +   ++  +  + E     K R AA
Sbjct: 419 RAAMLKSRFADTILKAQQKTLLDHGDKSGPLKMRHEERARIEAQIKSAEVAARIKAREAA 478

Query: 61  RGALEEVERTVEVEDSHKSLKDLERLC 78
           R ALE++ER+VEVE++ + LK+LE LC
Sbjct: 479 RVALEKMERSVEVENNSQCLKELEMLC 505

The following BLAST results are available for this feature:

BLAST of MC04g0074 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g0074 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061663.1	2.98e-21	40.27	transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa] >TYK21138.1 tran...	[more]
KAG6571342.1	2.33e-17	42.19	hypothetical protein SDJN03_30257, partial [Cucurbita argyrosperma subsp. sorori...	[more]
VFQ97081.1	8.27e-07	33.33	unnamed protein product [Cuscuta campestris]	[more]
KAE9601213.1	1.13e-06	41.38	putative chromatin remodeler Bromodomain family [Lupinus albus]	[more]
KAF1888001.1	1.13e-06	41.38	hypothetical protein Lal_00024012 [Lupinus albus]	[more]

BLAST of MC04g0074 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DC97	1.44e-21	40.27	Transcription factor GTE9 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0KGL2	6.52e-20	39.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421730 PE=4 SV=1	[more]
A0A484N6Z8	4.01e-07	33.33	Bromo domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS388...	[more]
A0A6A4PI18	5.45e-07	41.38	Putative chromatin remodeler Bromodomain family OS=Lupinus albus OX=3870 GN=Lalb...	[more]
A0A6A5NJM1	5.47e-07	41.38	Bromo domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00024012 PE=4 SV...	[more]

BLAST of MC04g0074 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 44..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g0074.1	MC04g0074.1	mRNA