MC04g0065 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC04g0065
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Serine-rich adhesin for platelets-like
Location	MC04: 487964 .. 488395 (-)
RNA-Seq Expression	MC04g0065
Synteny	MC04g0065

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAGTATGCTTTGAATATGAGAGGCAGGGATTTGGGGAGATGCTGGCCGTTCCGTGATAACGTGAAGAAAGAAGTTGCAGAAGCAATCCTCCCACCAATTTCAGTAACTAAATTCCGGTGGTGGTCCCACGAGCTGGAGGCTCTAAAATCATCGAATATTTCTGAAACCGTAACCGCTGCCGCAGCAGCACAAAAGCAAGAAGAGGAGAAAGTAATAATTATGGAGAAGATTTGTCCGGTGTGTGGCGTTTTCGTGACAGCTACTGTCAACGCTATGAACGCTCACATTGATAGCTGTTTAGCCCAAACAATAACCAACCAAAAGCGAAAGAATAATAGTAATGGAGCTGTTAAGCCCAAATCCAGAACCCCGAAAAAGAGATCAATAGCGGAAATCTTCGCAGTTGCTCCGCCTGTTGAAACGGTTGTA

mRNA sequence

AGAGAGTATGCTTTGAATATGAGAGGCAGGGATTTGGGGAGATGCTGGCCGTTCCGTGATAACGTGAAGAAAGAAGTTGCAGAAGCAATCCTCCCACCAATTTCAGTAACTAAATTCCGGTGGTGGTCCCACGAGCTGGAGGCTCTAAAATCATCGAATATTTCTGAAACCGTAACCGCTGCCGCAGCAGCACAAAAGCAAGAAGAGGAGAAAGTAATAATTATGGAGAAGATTTGTCCGGTGTGTGGCGTTTTCGTGACAGCTACTGTCAACGCTATGAACGCTCACATTGATAGCTGTTTAGCCCAAACAATAACCAACCAAAAGCGAAAGAATAATAGTAATGGAGCTGTTAAGCCCAAATCCAGAACCCCGAAAAAGAGATCAATAGCGGAAATCTTCGCAGTTGCTCCGCCTGTTGAAACGGTTGTA

Coding sequence (CDS)

AGAGAGTATGCTTTGAATATGAGAGGCAGGGATTTGGGGAGATGCTGGCCGTTCCGTGATAACGTGAAGAAAGAAGTTGCAGAAGCAATCCTCCCACCAATTTCAGTAACTAAATTCCGGTGGTGGTCCCACGAGCTGGAGGCTCTAAAATCATCGAATATTTCTGAAACCGTAACCGCTGCCGCAGCAGCACAAAAGCAAGAAGAGGAGAAAGTAATAATTATGGAGAAGATTTGTCCGGTGTGTGGCGTTTTCGTGACAGCTACTGTCAACGCTATGAACGCTCACATTGATAGCTGTTTAGCCCAAACAATAACCAACCAAAAGCGAAAGAATAATAGTAATGGAGCTGTTAAGCCCAAATCCAGAACCCCGAAAAAGAGATCAATAGCGGAAATCTTCGCAGTTGCTCCGCCTGTTGAAACGGTTGTA

Protein sequence

REYALNMRGRDLGRCWPFRDNVKKEVAEAILPPISVTKFRWWSHELEALKSSNISETVTAAAAAQKQEEEKVIIMEKICPVCGVFVTATVNAMNAHIDSCLAQTITNQKRKNNSNGAVKPKSRTPKKRSIAEIFAVAPPVETVV

Homology

[Close]

BLAST of MC04g0065 vs. NCBI nr
Match: XP_022148072.1 (uncharacterized protein LOC111016842 isoform X1 [Momordica charantia])

HSP 1 Score: 281 bits (719), Expect = 2.18e-85
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   REYALNMRGRDLGRCWPFRDNVKKEVAEAILPPISVTKFRWWSHELEALKSSNISETVTA 60
           REYALNMRGRDLGRCWPFRDNVKKEVAEAILPPISVTKFRWWSHELEALKSSNISETVTA
Sbjct: 11  REYALNMRGRDLGRCWPFRDNVKKEVAEAILPPISVTKFRWWSHELEALKSSNISETVTA 70

Query: 61  AAAAQKQEEEKVIIMEKICPVCGVFVTATVNAMNAHIDSCLAQTITNQKRKNNSNGAVKP 120
           AAAAQKQEEEKVIIMEKICPVCGVFVTATVNAMNAHIDSCLAQTITNQKRKNNSNGAVKP
Sbjct: 71  AAAAQKQEEEKVIIMEKICPVCGVFVTATVNAMNAHIDSCLAQTITNQKRKNNSNGAVKP 130

Query: 121 KSRTPKKRSIAEIFAVAPPVETVV 144
           KSRTPKKRSIAEIFAVAPPVETVV
Sbjct: 131 KSRTPKKRSIAEIFAVAPPVETVV 154

[Close]

BLAST of MC04g0065 vs. NCBI nr
Match: XP_022148073.1 (uncharacterized protein LOC111016842 isoform X2 [Momordica charantia])

HSP 1 Score: 263 bits (672), Expect = 8.23e-79
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 10  RDLGRCWPFRDNVKKEVAEAILPPISVTKFRWWSHELEALKSSNISETVTAAAAAQKQEE 69
           RDLGRCWPFRDNVKKEVAEAILPPISVTKFRWWSHELEALKSSNISETVTAAAAAQKQEE
Sbjct: 11  RDLGRCWPFRDNVKKEVAEAILPPISVTKFRWWSHELEALKSSNISETVTAAAAAQKQEE 70

Query: 70  EKVIIMEKICPVCGVFVTATVNAMNAHIDSCLAQTITNQKRKNNSNGAVKPKSRTPKKRS 129
           EKVIIMEKICPVCGVFVTATVNAMNAHIDSCLAQTITNQKRKNNSNGAVKPKSRTPKKRS
Sbjct: 71  EKVIIMEKICPVCGVFVTATVNAMNAHIDSCLAQTITNQKRKNNSNGAVKPKSRTPKKRS 130

Query: 130 IAEIFAVAPPVETVV 144
           IAEIFAVAPPVETVV
Sbjct: 131 IAEIFAVAPPVETVV 145

[Close]

BLAST of MC04g0065 vs. NCBI nr
Match: KAG6589290.1 (hypothetical protein SDJN03_17855, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 163 bits (413), Expect = 4.73e-45
Identity = 94/157 (59.87%), Postives = 109/157 (69.43%), Query Frame = 0


Query: 1   REYALNMRGRDLGR-CWPFRDNVKKEVAEAILPPISVTKFRWWSHELEALKSSNISETVT 60
           REYAL MRG+DL R  WPF + VK+EVAEA+LPPISV KFRWWS EL+ LKS+ + E + 
Sbjct: 11  REYALKMRGKDLTRRSWPFSEKVKEEVAEALLPPISVAKFRWWSRELQILKSNIVVEDMK 70

Query: 61  AAAAAQKQEEEKVIIMEKICPVCGVFVTATVNAMNAHIDSCLAQTITNQKRKNNSNGA-- 120
                          +EK CPVCGVFVTATVNAM+AHIDSCLA T T +KRKN + G   
Sbjct: 71  ---------------VEKTCPVCGVFVTATVNAMSAHIDSCLAPT-TKEKRKNKAGGGGA 130

Query: 121 ----------VKPKSRTPKKRSIAEIFAVAPPVETVV 144
                     +KPKSR PKKRSIAEIFAVAPPVET++
Sbjct: 131 AAAAAAAAGFLKPKSRPPKKRSIAEIFAVAPPVETMI 151

[Close]

BLAST of MC04g0065 vs. NCBI nr
Match: KAG7022988.1 (hypothetical protein SDJN02_16724 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164 bits (414), Expect = 1.38e-43
Identity = 94/156 (60.26%), Postives = 109/156 (69.87%), Query Frame = 0


Query: 1   REYALNMRGRDLGR-CWPFRDNVKKEVAEAILPPISVTKFRWWSHELEALKSSNISETVT 60
           REYAL MRG+DL R  WPF + VK+EVAEA+LPPISV KFRWWS EL+ LKS+ + E + 
Sbjct: 11  REYALKMRGKDLTRRSWPFSEKVKEEVAEALLPPISVAKFRWWSRELQILKSNIVVEDMK 70

Query: 61  AAAAAQKQEEEKVIIMEKICPVCGVFVTATVNAMNAHIDSCLAQTITNQKRKNNSNGA-- 120
                          +EK CPVCGVFVTATVNAM+AHIDSCLA T T +KRKN + G   
Sbjct: 71  ---------------VEKTCPVCGVFVTATVNAMSAHIDSCLAPT-TKEKRKNKAGGGGA 130

Query: 121 ---------VKPKSRTPKKRSIAEIFAVAPPVETVV 144
                    +KPKSR PKKRSIAEIFAVAPPVET++
Sbjct: 131 AAAAAAAGFLKPKSRPPKKRSIAEIFAVAPPVETMI 150

[Close]

BLAST of MC04g0065 vs. NCBI nr
Match: XP_022930701.1 (uncharacterized protein LOC111437098 [Cucurbita moschata])

HSP 1 Score: 162 bits (411), Expect = 3.47e-43
Identity = 93/153 (60.78%), Postives = 108/153 (70.59%), Query Frame = 0


Query: 1   REYALNMRGRDLGR-CWPFRDNVKKEVAEAILPPISVTKFRWWSHELEALKSSNISETVT 60
           REYALNMRG+DL R  WPF + VK+EVAEA+LPPISV KFRWWS EL+ LKS+ + E + 
Sbjct: 11  REYALNMRGKDLTRRSWPFSEKVKEEVAEALLPPISVAKFRWWSQELQILKSNKVVEDME 70

Query: 61  AAAAAQKQEEEKVIIMEKICPVCGVFVTATVNAMNAHIDSCLAQTITNQKRKNNSNGA-- 120
                          +EK CPVCGVFVTATVNAM+AHI SCLA T T +KRKN + G   
Sbjct: 71  ---------------VEKTCPVCGVFVTATVNAMSAHIHSCLAPT-TKEKRKNKAGGGGA 130

Query: 121 ------VKPKSRTPKKRSIAEIFAVAPPVETVV 144
                 +K KSR PKKRSIAEIFAVAPPVET++
Sbjct: 131 AAAAGFLKAKSRPPKKRSIAEIFAVAPPVETMI 147

[Close]

BLAST of MC04g0065 vs. ExPASy TrEMBL
Match: A0A6J1D428 (uncharacterized protein LOC111016842 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016842 PE=4 SV=1)

HSP 1 Score: 281 bits (719), Expect = 1.06e-85
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   REYALNMRGRDLGRCWPFRDNVKKEVAEAILPPISVTKFRWWSHELEALKSSNISETVTA 60
           REYALNMRGRDLGRCWPFRDNVKKEVAEAILPPISVTKFRWWSHELEALKSSNISETVTA
Sbjct: 11  REYALNMRGRDLGRCWPFRDNVKKEVAEAILPPISVTKFRWWSHELEALKSSNISETVTA 70

Query: 61  AAAAQKQEEEKVIIMEKICPVCGVFVTATVNAMNAHIDSCLAQTITNQKRKNNSNGAVKP 120
           AAAAQKQEEEKVIIMEKICPVCGVFVTATVNAMNAHIDSCLAQTITNQKRKNNSNGAVKP
Sbjct: 71  AAAAQKQEEEKVIIMEKICPVCGVFVTATVNAMNAHIDSCLAQTITNQKRKNNSNGAVKP 130

Query: 121 KSRTPKKRSIAEIFAVAPPVETVV 144
           KSRTPKKRSIAEIFAVAPPVETVV
Sbjct: 131 KSRTPKKRSIAEIFAVAPPVETVV 154

[Close]

BLAST of MC04g0065 vs. ExPASy TrEMBL
Match: A0A6J1D325 (uncharacterized protein LOC111016842 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111016842 PE=4 SV=1)

HSP 1 Score: 263 bits (672), Expect = 3.98e-79
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 10  RDLGRCWPFRDNVKKEVAEAILPPISVTKFRWWSHELEALKSSNISETVTAAAAAQKQEE 69
           RDLGRCWPFRDNVKKEVAEAILPPISVTKFRWWSHELEALKSSNISETVTAAAAAQKQEE
Sbjct: 11  RDLGRCWPFRDNVKKEVAEAILPPISVTKFRWWSHELEALKSSNISETVTAAAAAQKQEE 70

Query: 70  EKVIIMEKICPVCGVFVTATVNAMNAHIDSCLAQTITNQKRKNNSNGAVKPKSRTPKKRS 129
           EKVIIMEKICPVCGVFVTATVNAMNAHIDSCLAQTITNQKRKNNSNGAVKPKSRTPKKRS
Sbjct: 71  EKVIIMEKICPVCGVFVTATVNAMNAHIDSCLAQTITNQKRKNNSNGAVKPKSRTPKKRS 130

Query: 130 IAEIFAVAPPVETVV 144
           IAEIFAVAPPVETVV
Sbjct: 131 IAEIFAVAPPVETVV 145

[Close]

BLAST of MC04g0065 vs. ExPASy TrEMBL
Match: A0A6J1ERN9 (uncharacterized protein LOC111437098 OS=Cucurbita moschata OX=3662 GN=LOC111437098 PE=4 SV=1)

HSP 1 Score: 162 bits (411), Expect = 1.68e-43
Identity = 93/153 (60.78%), Postives = 108/153 (70.59%), Query Frame = 0


Query: 1   REYALNMRGRDLGR-CWPFRDNVKKEVAEAILPPISVTKFRWWSHELEALKSSNISETVT 60
           REYALNMRG+DL R  WPF + VK+EVAEA+LPPISV KFRWWS EL+ LKS+ + E + 
Sbjct: 11  REYALNMRGKDLTRRSWPFSEKVKEEVAEALLPPISVAKFRWWSQELQILKSNKVVEDME 70

Query: 61  AAAAAQKQEEEKVIIMEKICPVCGVFVTATVNAMNAHIDSCLAQTITNQKRKNNSNGA-- 120
                          +EK CPVCGVFVTATVNAM+AHI SCLA T T +KRKN + G   
Sbjct: 71  ---------------VEKTCPVCGVFVTATVNAMSAHIHSCLAPT-TKEKRKNKAGGGGA 130

Query: 121 ------VKPKSRTPKKRSIAEIFAVAPPVETVV 144
                 +K KSR PKKRSIAEIFAVAPPVET++
Sbjct: 131 AAAAGFLKAKSRPPKKRSIAEIFAVAPPVETMI 147

[Close]

BLAST of MC04g0065 vs. ExPASy TrEMBL
Match: A0A6J1JNM5 (uncharacterized protein LOC111486332 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486332 PE=4 SV=1)

HSP 1 Score: 162 bits (411), Expect = 1.68e-43
Identity = 94/148 (63.51%), Postives = 107/148 (72.30%), Query Frame = 0


Query: 1   REYALNMRGRDLGR-CWPFRDNVKKEVAEAILPPISVTKFRWWSHELEALKSSNISETVT 60
           REYAL MRG+DL R  WPF + VK+EVAEA+LPPISV KFRWWS EL+ LKS+ +     
Sbjct: 11  REYALKMRGKDLTRRSWPFSEKVKEEVAEALLPPISVAKFRWWSQELQILKSNKVV---- 70

Query: 61  AAAAAQKQEEEKVIIMEKICPVCGVFVTATVNAMNAHIDSCLAQTITNQKRKNNSNGA-- 120
                   E+ KV   +KICPVCGVFVTATVNAM+AHID CLA T T +KRKN + G   
Sbjct: 71  --------EDSKV---DKICPVCGVFVTATVNAMSAHIDGCLAPT-TKEKRKNKAGGGGA 130

Query: 121 ---VKPKSRTPKKRSIAEIFAVAPPVET 142
              +K KSR PKKRSIAEIFAVAPPVET
Sbjct: 131 AAFLKAKSRPPKKRSIAEIFAVAPPVET 142

[Close]

BLAST of MC04g0065 vs. ExPASy TrEMBL
Match: A0A6J1JPI0 (uncharacterized protein LOC111486332 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486332 PE=4 SV=1)

HSP 1 Score: 162 bits (411), Expect = 1.69e-43
Identity = 94/148 (63.51%), Postives = 107/148 (72.30%), Query Frame = 0


Query: 1   REYALNMRGRDLGR-CWPFRDNVKKEVAEAILPPISVTKFRWWSHELEALKSSNISETVT 60
           REYAL MRG+DL R  WPF + VK+EVAEA+LPPISV KFRWWS EL+ LKS+ +     
Sbjct: 11  REYALKMRGKDLTRRSWPFSEKVKEEVAEALLPPISVAKFRWWSQELQILKSNKVV---- 70

Query: 61  AAAAAQKQEEEKVIIMEKICPVCGVFVTATVNAMNAHIDSCLAQTITNQKRKNNSNGA-- 120
                   E+ KV   +KICPVCGVFVTATVNAM+AHID CLA T T +KRKN + G   
Sbjct: 71  --------EDSKV---DKICPVCGVFVTATVNAMSAHIDGCLAPT-TKEKRKNKAGGGGA 130

Query: 121 ---VKPKSRTPKKRSIAEIFAVAPPVET 142
              +K KSR PKKRSIAEIFAVAPPVET
Sbjct: 131 AAFLKAKSRPPKKRSIAEIFAVAPPVET 142

[Close]

BLAST of MC04g0065 vs. TAIR 10
Match: AT3G58770.1 (unknown protein; Has 38 Blast hits to 36 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-08
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 1  REYALNMRGRDLGRCWPFRDNVKKEVAEAILPPISVTKFRWWSHELEAL 50
          REY   +R  +  +CWPF      ++ ++ LPPI+V+KFRWWSHEL +L
Sbjct: 11 REYTEKVRSDNERKCWPFAG----DLIQSFLPPITVSKFRWWSHELASL 55

The following BLAST results are available for this feature:

BLAST of MC04g0065 vs.


Match Name	E-value	Identity	Description

BLAST of MC04g0065 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148072.1	2.18e-85	100.00	uncharacterized protein LOC111016842 isoform X1 [Momordica charantia]	[more]
XP_022148073.1	8.23e-79	100.00	uncharacterized protein LOC111016842 isoform X2 [Momordica charantia]	[more]
KAG6589290.1	4.73e-45	59.87	hypothetical protein SDJN03_17855, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7022988.1	1.38e-43	60.26	hypothetical protein SDJN02_16724 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022930701.1	3.47e-43	60.78	uncharacterized protein LOC111437098 [Cucurbita moschata]	[more]

BLAST of MC04g0065 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D428	1.06e-85	100.00	uncharacterized protein LOC111016842 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1D325	3.98e-79	100.00	uncharacterized protein LOC111016842 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1ERN9	1.68e-43	60.78	uncharacterized protein LOC111437098 OS=Cucurbita moschata OX=3662 GN=LOC1114370...	[more]
A0A6J1JNM5	1.68e-43	63.51	uncharacterized protein LOC111486332 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JPI0	1.69e-43	63.51	uncharacterized protein LOC111486332 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of MC04g0065 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G58770.1	2.5e-08	46.94	unknown protein; Has 38 Blast hits to 36 proteins in 11 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006642	Rad18, zinc finger UBZ4-type	SMART	SM00734	c2hc_5	coord: 78..101 e-value: 0.0031 score: 26.7
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 78..104 e-value: 2.1E-6 score: 29.3
None	No IPR available	PANTHER	PTHR36892:SF1	OS01G0201800 PROTEIN	coord: 1..143
None	No IPR available	PANTHER	PTHR36892	OS01G0201800 PROTEIN	coord: 1..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC04g0065.1	MC04g0065.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding