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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ACTATCAGGGCCTCCCAGCTGAGTGACAGCATCGACAAAGCGTTCATGAAGCTCAACAGTCCAGCGGAGGCGGGGTTTGGGGTCGGTGGTGAGAACCAGCCCGGAGTCGCCTTGGACGCACAT mRNA sequence ACTATCAGGGCCTCCCAGCTGAGTGACAGCATCGACAAAGCGTTCATGAAGCTCAACAGTCCAGCGGAGGCGGGGTTTGGGGTCGGTGGTGAGAACCAGCCCGGAGTCGCCTTGGACGCACAT Coding sequence (CDS) ACTATCAGGGCCTCCCAGCTGAGTGACAGCATCGACAAAGCGTTCATGAAGCTCAACAGTCCAGCGGAGGCGGGGTTTGGGGTCGGTGGTGAGAACCAGCCCGGAGTCGCCTTGGACGCACAT Protein sequence TIRASQLSDSIDKAFMKLNSPAEAGFGVGGENQPGVALDAH
Homology
BLAST of MC04g0012 vs. NCBI nr
Match: CAN62026.1 (hypothetical protein VITISV_005440 [Vitis vinifera]) HSP 1 Score: 46.6 bits (109), Expect = 1.56e-04 Identity = 21/37 (56.76%), Postives = 30/37 (81.08%), Query Frame = 0
Query: 1 TIRASQLSDSIDKAFMKLNSPAEAGFGVGGENQPGVA 37
TI A++LS+SI+K+ ++L PAEAG G+GGENQ +A
Sbjct: 41 TIGATELSNSINKSLVELGGPAEAGLGIGGENQASIA 77
BLAST of MC04g0012 vs. ExPASy TrEMBL
Match: A5C2D0 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_005440 PE=4 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 7.55e-05 Identity = 21/37 (56.76%), Postives = 30/37 (81.08%), Query Frame = 0
Query: 1 TIRASQLSDSIDKAFMKLNSPAEAGFGVGGENQPGVA 37
TI A++LS+SI+K+ ++L PAEAG G+GGENQ +A
Sbjct: 41 TIGATELSNSINKSLVELGGPAEAGLGIGGENQASIA 77
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| CAN62026.1 | 1.56e-04 | 56.76 | hypothetical protein VITISV_005440 [Vitis vinifera] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A5C2D0 | 7.55e-05 | 56.76 | Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_005440 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 22..41 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
|
