MC03g_new0238 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC03g_new0238
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein .
LocationMC03: 10881626 .. 10884236 (+)
RNA-Seq ExpressionMC03g_new0238
SyntenyMC03g_new0238
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTAGGCTATGGCTATGGGGATGGGCTTCCCTTCTGAAAATCCAAGATCCAAGATCCAAGATCCAAACCAATTTTCTGTTTCAAGTTTACCAGTGATTTGGGGATTTTGGGGAGGTTTTAGGGTTCCAGTGAGCGAATTCACAGTCGGAAATGGCAGCTTCAGCTTCAGTTGCACTAAGATCCTCGTGTCTGCGAGCAATTTGTAGAATATCCACCAGTTCCGCCGCCCGAAATGTCTCCGTTTCATCGGTCCTTCCCTCGCTCCGCTCAAGTTTCGTTCCTCGGAGGACTTCAATTTCCCCTACTCACTCTCTAAGGTTGCTGCCTGATTTCGAGTTACTACCTACTTTCGTCCCTCTGTATTTCATTCTGATGTGATGTGATGTGATCGTTTAGGTTGTTGCGACGAGAATTGAGCTCCCTTCGACCTGTTCACAGCGCAATTGCCTCCGCTTGCCTTGTTTCTGAGCTGCCCGCCGAAGCCAGCGCCTCCGTAGAAGGTCAGTGTTCGTATGTTTCTTGCTTCCTCATCAGTGCTGTTGTTTTTTGAATTGGCTTCATTCGCATCAAATTTGAGTAGTACTCGACCATCTTAATTGTAGAAATAGTTCCTTAGAATATATGCAGGTGCAGCCAAATAGTTCCTTATGACCTATTCTAACAGAACTCCATAGCTATTTACTACTGTTCAGTTAGCTGAAACGTTGAATTTAATTTTTGGGATTGAAATCAAGATATGGGAACAGTGCAAGAGATGAATTGTTCAATTGTGAGTTCTATAAGGGGAAGTTAGGAGCTGTCAGGATTAGACCGAATTGTCTACAATCTGATCATGATTATATTCAGCAACCTGGATGTGAGGGAATTATGCCCTGAGAAATGTTTATCATGTATTGAATCTGTAATAAACTAGAGGAAAGTGGTTCAAGAATAAAATTGGTGGGTGTTCTTTGGGGAGTACGATGGTCAATTGTCATGAGATCTTAAGGTTACTTGTGTTGTATGACCTTTAGAATAACTCTTGAAGTTAGTCCAAATGAATTACTTTGTGTGAGTTCACTAAGAAGGATCCACAGAATAGATGTTTATCTTCCCGGCCTGATGGAAACTCATGATTCTTCATCTCCTTCAAAGCTTCCCGAATTCCACCTGCGTGATGACTGATGGGCACTGAACACAAATCTTTTCTTGACTCTTGAGACTAACTCTGTCAGACACAAAAAGAATGCTATTTTACTTATTTATATAAAGTGATGGGAGAATGTTGGACACATCATCTAATTATGATAAGCCAACTTAAACATAAGTCTGTTGCAAGGAGAAATGAAACCAAAAATAAACTATCCCCATAAAATTAAATACGGAAGAGGGAACTAGAAGAATCTCAAAATTTAAATTATTCTGTACTCCTTCCAAATTGTACCTGTCAACTACCACAAAAGGGTTACAATTCCCAAACGCCTTAGATAAATGAAGCCTAACGAAATGCACAAAGTAATTTCTGTTGCTTCAACCAACGTTCTTTTTTGCTCTGTCTTAGAAGTGTCTACTTCCATTCAAACTTCTTAAAAAATAGCTATCATTCTTTTCGTTATTTGTGGCAACTGAACTTGAAAGGAGACTATTTCCAAACAGCACCCAATTTGGATGAGAGAGGCCTGATAAATGCTGTATCTGAGAAAATTTATATCATCAGAACCAAGCTAAATGAAATACACGAGAAATGATCACAATTAAGGTTGGAAGCAAGAGTGTCTTATTTGAGTATGATAGTTCATGTTCATCTTCTCATGAGTAGAAACCTAGAAAATGGGCTAACTTCATTAGGATTGAGTTTTGATCACCAGATTTCAGGCAAGAATGTACAAGCTTAAAACTAATTTGAAACAATGACACTCGTATATGTTTTAATATTAGATTCAGGGGTCTCATATCTGAAAGTGTTACCGCTGCCCCAACTCATACCACACTCTGTTATTGCTCTTTTATTTCAGAGCACCGTATGTTTTCCATTGCCATATAGCATTGCTTAAATTCGAGGCATGGGCCTATTATAAGATGTGGTAATCAATCCGTATGATAAAAGTGGATTAGAATCTCGGAATAAGATTAGGCCAGACTAACAAATTTCAAAAGAGGTGAACAGATGGACAAAATAGTGAAGGATATTATGCTTTTCTTCCTGTGATACATGAATCTTGCAACTACTATCTGGTAGTGTGACCTTGACCATGGTTCCTAGCTACATAATCAGTTGTTAATTTAATTTTTTGGGTACATGTCTAGTGAGACAGATAAAAATAGGCCAATGTTATGAACCATGACCATGCTTTGACCCCTTTTCTCGGACTTGATAACAGGTAGATTTGTGAACTATCTCAGCCCCATCTAGCACCAAACGCTTATAGAGATGCAGGGTTTTCTTCTTGTGTATTAGATTTCCAGATTCACTTCATAACGTCTTCTGCTGTTGATTATGAAGACATGGTTTCTTTGGTTCCTTGAATTGATTGTACTCATATAAGTATATTTATGTTACATTAAGCAGCCAATTTTGCTAGTCTTGTTTTTATCAAGCCCCAGGTGATGACACCCCCAATTGGCCAAACT

mRNA sequence

ATGGCAGCTTCAGCTTCAGTTGCACTAAGATCCTCGTGTCTGCGAGCAATTTGTAGAATATCCACCAGTTCCGCCGCCCGAAATGTCTCCGTTTCATCGGTCCTTCCCTCGCTCCGCTCAAGTTTCGTTCCTCGGAGGACTTCAATTTCCCCTACTCACTCTCTAAGGTTGTTGCGACGAGAATTGAGCTCCCTTCGACCTGTTCACAGCGCAATTGCCTCCGCTTGCCTTGTTTCTGAGCTGCCCGCCGAAGCCAGCGCCTCCGTAGAAGGTAGATTTGTGAACTATCTCAGCCCCATCTAG

Coding sequence (CDS)

ATGGCAGCTTCAGCTTCAGTTGCACTAAGATCCTCGTGTCTGCGAGCAATTTGTAGAATATCCACCAGTTCCGCCGCCCGAAATGTCTCCGTTTCATCGGTCCTTCCCTCGCTCCGCTCAAGTTTCGTTCCTCGGAGGACTTCAATTTCCCCTACTCACTCTCTAAGGTTGTTGCGACGAGAATTGAGCTCCCTTCGACCTGTTCACAGCGCAATTGCCTCCGCTTGCCTTGTTTCTGAGCTGCCCGCCGAAGCCAGCGCCTCCGTAGAAGGTAGATTTGTGAACTATCTCAGCCCCATCTAG

Protein sequence

MAASASVALRSSCLRAICRISTSSAARNVSVSSVLPSLRSSFVPRRTSISPTHSLRLLRRELSSLRPVHSAIASACLVSELPAEASASVEGRFVNYLSPI
Homology
[Close]
BLAST of MC03g_new0238 vs. NCBI nr
Match: XP_022152888.1 (uncharacterized protein LOC111020511 [Momordica charantia])

HSP 1 Score: 177 bits (448), Expect = 2.05e-55
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MAASASVALRSSCLRAICRISTSSAARNVSVSSVLPSLRSSFVPRRTSISPTHSLRLLRR 60
           MAASASVALRSSCLRAICRISTSSAARNVSVSSVLPSLRSSFVPRRTSISPTHSLRLLRR
Sbjct: 1   MAASASVALRSSCLRAICRISTSSAARNVSVSSVLPSLRSSFVPRRTSISPTHSLRLLRR 60

Query: 61  ELSSLRPVHSAIASACLVSELPAEASASVEGRFVNYLSPI 100
           ELSSLRPVHSAIASACLVSELPAEASASVEGRFVNYLSPI
Sbjct: 61  ELSSLRPVHSAIASACLVSELPAEASASVEGRFVNYLSPI 100

[Close]
BLAST of MC03g_new0238 vs. NCBI nr
Match: XP_022937479.1 (uncharacterized protein LOC111443881 [Cucurbita moschata] >XP_023536895.1 uncharacterized protein LOC111798142 [Cucurbita pepo subsp. pepo] >KAG6585998.1 hypothetical protein SDJN03_18731, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020788.1 hypothetical protein SDJN02_17476 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151 bits (382), Expect = 2.17e-45
Identity = 88/96 (91.67%), Postives = 91/96 (94.79%), Query Frame = 0 

Query: 5   ASVALRSSCLRAICRISTSSAARNVSVSSVLPSLRSSFVPRRTSISPTHSLRLLRRELSS 64
           ASVALRSSCLRAI RIST SAARNVSVSSVLPS+RSSFV RR SISP HSLRLLRRELSS
Sbjct: 3   ASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISP-HSLRLLRRELSS 62

Query: 65  LRPVHSAIASACLVSELPAEASASVEGRFVNYLSPI 100
           LRP+HSAIASACLVSELPAEASASV+GRFVNYLSPI
Sbjct: 63  LRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI 97

[Close]
BLAST of MC03g_new0238 vs. NCBI nr
Match: XP_022969556.1 (uncharacterized protein LOC111468540 [Cucurbita maxima])

HSP 1 Score: 149 bits (376), Expect = 1.78e-44
Identity = 86/96 (89.58%), Postives = 91/96 (94.79%), Query Frame = 0 

Query: 5   ASVALRSSCLRAICRISTSSAARNVSVSSVLPSLRSSFVPRRTSISPTHSLRLLRRELSS 64
           ASVALRSSCLRAI RIST+S+ARNVSVSS LPS+RSSFV RR SISP HSLRLLRRELSS
Sbjct: 3   ASVALRSSCLRAISRISTASSARNVSVSSALPSVRSSFVSRRISISP-HSLRLLRRELSS 62

Query: 65  LRPVHSAIASACLVSELPAEASASVEGRFVNYLSPI 100
           LRP+HSAIASACLVSELPAEASASV+GRFVNYLSPI
Sbjct: 63  LRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI 97

[Close]
BLAST of MC03g_new0238 vs. NCBI nr
Match: XP_030957939.1 (uncharacterized protein LOC115979952 [Quercus lobata])

HSP 1 Score: 98.2 bits (243), Expect = 3.03e-24
Identity = 67/100 (67.00%), Postives = 74/100 (74.00%), Query Frame = 0 

Query: 5   ASVALRSSCLRAICR--ISTSSAARNVSVSSVLPSLRSSFVPRRTSISPTHS--LRLLRR 64
           ASVA RS+ +RA CR  +S SSA R  S    LP   S+FVP R   SPT S  LRLLRR
Sbjct: 3   ASVAGRSTLVRAFCRASMSPSSATRRFS----LPPRMSNFVPHR---SPTSSPPLRLLRR 62

Query: 65  ELSSLRPVHSAIASACLVSELPAEASASVEGRFVNYLSPI 100
           ELSSL+PVHSAIASACLVS+LP+EAS S EGRF NYLSPI
Sbjct: 63  ELSSLQPVHSAIASACLVSKLPSEASTSTEGRFANYLSPI 95

[Close]
BLAST of MC03g_new0238 vs. NCBI nr
Match: XP_018848639.1 (uncharacterized protein LOC109011774 [Juglans regia] >KAF5471005.1 hypothetical protein F2P56_011484 [Juglans regia])

HSP 1 Score: 98.2 bits (243), Expect = 3.49e-24
Identity = 62/101 (61.39%), Postives = 75/101 (74.26%), Query Frame = 0 

Query: 1   MAASASVALRSSCLRAICRISTSSAARNVSVSSVLPSLRSSFVPRRTSISPTH-SLRLLR 60
           MAAS +V  RS+ +RA+CR S  S   + +    +P   S+FVPRRT  SP H S RL+R
Sbjct: 1   MAASMAVG-RSTLVRAMCRASKISCCSSATRRFSIPPSPSNFVPRRTPFSPHHPSPRLVR 60

Query: 61  RELSSLRPVHSAIASACLVSELPAEASASVEGRFVNYLSPI 100
           RELSSL P+HSAIASACLVS+LP+EAS S EGRFV+YLSPI
Sbjct: 61  RELSSLLPIHSAIASACLVSKLPSEASNSTEGRFVSYLSPI 100

[Close]
BLAST of MC03g_new0238 vs. ExPASy TrEMBL
Match: A0A6J1DG34 (uncharacterized protein LOC111020511 OS=Momordica charantia OX=3673 GN=LOC111020511 PE=4 SV=1)

HSP 1 Score: 177 bits (448), Expect = 9.92e-56
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MAASASVALRSSCLRAICRISTSSAARNVSVSSVLPSLRSSFVPRRTSISPTHSLRLLRR 60
           MAASASVALRSSCLRAICRISTSSAARNVSVSSVLPSLRSSFVPRRTSISPTHSLRLLRR
Sbjct: 1   MAASASVALRSSCLRAICRISTSSAARNVSVSSVLPSLRSSFVPRRTSISPTHSLRLLRR 60

Query: 61  ELSSLRPVHSAIASACLVSELPAEASASVEGRFVNYLSPI 100
           ELSSLRPVHSAIASACLVSELPAEASASVEGRFVNYLSPI
Sbjct: 61  ELSSLRPVHSAIASACLVSELPAEASASVEGRFVNYLSPI 100

[Close]
BLAST of MC03g_new0238 vs. ExPASy TrEMBL
Match: A0A6J1FBA6 (uncharacterized protein LOC111443881 OS=Cucurbita moschata OX=3662 GN=LOC111443881 PE=4 SV=1)

HSP 1 Score: 151 bits (382), Expect = 1.05e-45
Identity = 88/96 (91.67%), Postives = 91/96 (94.79%), Query Frame = 0 

Query: 5   ASVALRSSCLRAICRISTSSAARNVSVSSVLPSLRSSFVPRRTSISPTHSLRLLRRELSS 64
           ASVALRSSCLRAI RIST SAARNVSVSSVLPS+RSSFV RR SISP HSLRLLRRELSS
Sbjct: 3   ASVALRSSCLRAISRISTGSAARNVSVSSVLPSVRSSFVSRRISISP-HSLRLLRRELSS 62

Query: 65  LRPVHSAIASACLVSELPAEASASVEGRFVNYLSPI 100
           LRP+HSAIASACLVSELPAEASASV+GRFVNYLSPI
Sbjct: 63  LRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI 97

[Close]
BLAST of MC03g_new0238 vs. ExPASy TrEMBL
Match: A0A6J1HY48 (uncharacterized protein LOC111468540 OS=Cucurbita maxima OX=3661 GN=LOC111468540 PE=4 SV=1)

HSP 1 Score: 149 bits (376), Expect = 8.64e-45
Identity = 86/96 (89.58%), Postives = 91/96 (94.79%), Query Frame = 0 

Query: 5   ASVALRSSCLRAICRISTSSAARNVSVSSVLPSLRSSFVPRRTSISPTHSLRLLRRELSS 64
           ASVALRSSCLRAI RIST+S+ARNVSVSS LPS+RSSFV RR SISP HSLRLLRRELSS
Sbjct: 3   ASVALRSSCLRAISRISTASSARNVSVSSALPSVRSSFVSRRISISP-HSLRLLRRELSS 62

Query: 65  LRPVHSAIASACLVSELPAEASASVEGRFVNYLSPI 100
           LRP+HSAIASACLVSELPAEASASV+GRFVNYLSPI
Sbjct: 63  LRPIHSAIASACLVSELPAEASASVQGRFVNYLSPI 97

[Close]
BLAST of MC03g_new0238 vs. ExPASy TrEMBL
Match: A0A2I4GXL8 (uncharacterized protein LOC109011774 OS=Juglans regia OX=51240 GN=LOC109011774 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.69e-24
Identity = 62/101 (61.39%), Postives = 75/101 (74.26%), Query Frame = 0 

Query: 1   MAASASVALRSSCLRAICRISTSSAARNVSVSSVLPSLRSSFVPRRTSISPTH-SLRLLR 60
           MAAS +V  RS+ +RA+CR S  S   + +    +P   S+FVPRRT  SP H S RL+R
Sbjct: 1   MAASMAVG-RSTLVRAMCRASKISCCSSATRRFSIPPSPSNFVPRRTPFSPHHPSPRLVR 60

Query: 61  RELSSLRPVHSAIASACLVSELPAEASASVEGRFVNYLSPI 100
           RELSSL P+HSAIASACLVS+LP+EAS S EGRFV+YLSPI
Sbjct: 61  RELSSLLPIHSAIASACLVSKLPSEASNSTEGRFVSYLSPI 100

[Close]
BLAST of MC03g_new0238 vs. ExPASy TrEMBL
Match: A0A2I4GV93 (uncharacterized protein LOC109011182 OS=Juglans regia OX=51240 GN=LOC109011182 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.70e-23
Identity = 56/91 (61.54%), Postives = 68/91 (74.73%), Query Frame = 0 

Query: 10  RSSCLRAICRISTSSAARNVSVSSVLPSLRSSFVPRRTSISPTHSLRLLRRELSSLRPVH 69
           +SS L A+CR S +S+  + +    +P   SSFVP RT ISP    RL+RRELSS++PVH
Sbjct: 9   KSSRLFALCRASKNSSFSSATRRFSVPLRPSSFVPLRTPISPPPHPRLVRRELSSIQPVH 68

Query: 70  SAIASACLVSELPAEASASVEGRFVNYLSPI 100
           SAIASACLVS+LP+EA  S EGRFVNYLSPI
Sbjct: 69  SAIASACLVSKLPSEAITSTEGRFVNYLSPI 99

[Close]
BLAST of MC03g_new0238 vs. TAIR 10
Match: AT2G27775.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27800.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.4 bits (137), Expect = 7.7e-09
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 0 

Query: 1   MAASASVALRSSCLRAICRISTSSAARNVSVSSVLPSLRSSFVPRRTSISPTHSL----- 60
           MAA    +  ++ +R+I R +T   ARN+  S   PS     VP     SP  +      
Sbjct: 1   MAAIGIASRSATFMRSINRTAT---ARNLISSRARPS-----VPNPNFTSPRFNTSSRIE 60

Query: 61  ----RLLRRELSSLRPVHSAIASACLVSELPAEASASVEGRFVNYLSPI 101
               RLLRRELS+ +P HS IA+ACLVS+LP++ + S EGRF NYLSPI
Sbjct: 61  GSVPRLLRRELSTQQPFHSTIAAACLVSKLPSDVT-SPEGRFANYLSPI 100

The following BLAST results are available for this feature:
BLAST of MC03g_new0238 vs.
Match NameE-valueIdentityDescription
BLAST of MC03g_new0238 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022152888.12.05e-55100.00uncharacterized protein LOC111020511 [Momordica charantia][more]
XP_022937479.12.17e-4591.67uncharacterized protein LOC111443881 [Cucurbita moschata] >XP_023536895.1 unchar... [more]
XP_022969556.11.78e-4489.58uncharacterized protein LOC111468540 [Cucurbita maxima][more]
XP_030957939.13.03e-2467.00uncharacterized protein LOC115979952 [Quercus lobata][more]
XP_018848639.13.49e-2461.39uncharacterized protein LOC109011774 [Juglans regia] >KAF5471005.1 hypothetical ... [more]
BLAST of MC03g_new0238 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DG349.92e-56100.00uncharacterized protein LOC111020511 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A6J1FBA61.05e-4591.67uncharacterized protein LOC111443881 OS=Cucurbita moschata OX=3662 GN=LOC1114438... [more]
A0A6J1HY488.64e-4589.58uncharacterized protein LOC111468540 OS=Cucurbita maxima OX=3661 GN=LOC111468540... [more]
A0A2I4GXL81.69e-2461.39uncharacterized protein LOC109011774 OS=Juglans regia OX=51240 GN=LOC109011774 P... [more]
A0A2I4GV932.70e-2361.54uncharacterized protein LOC109011182 OS=Juglans regia OX=51240 GN=LOC109011182 P... [more]
BLAST of MC03g_new0238 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G27775.17.7e-0944.04FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC03g_new0238.1MC03g_new0238.1mRNA