MC03g_new0230 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC03g_new0230
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	MC03: 10185975 .. 10190508 (+)
RNA-Seq Expression	MC03g_new0230
Synteny	MC03g_new0230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCACATATTTGTTGTCCACTGTGTTTATTTTTTTTTTCTTTTTAACAGTGGTATCAGAGCCAAGTTTGGGAAGAGTGTGAAAATTTTGAAAGGGAAACACAGGGAAAGGAAAACACAACGAAGTGAGAGCAATAAGTGCAGTAGCATTAAGTTTTGTTTTGCTCATATTGTTTTTCTATTTTGAAGCATAAATGGCCTCGGAGAGCAACTTTGTGCAAGCAGCTATTCCTCGTTTTGATGGTCACTACGATCATTGGAGCATGTTGATGGAAAATGTCTTGCGGTCCAAAGAGTACTGGTTGGTTGTTGAAACGGGTGTTGCAACACCTGCAGCTGGAGAGATTCTCAGAGATGCTGAATAGAAGGAGTTGGAGGGACTCAAGTTGAAAGACTTGAAGGCAAAAAATTATCTGTTTCAGGCCATTGATCGTTCTATCCTGGAGACTATTCTTTGCAAAGAATCATCCAAGGATATTTGGGAATCAATGAAGAAAAAGTATCAAGGCTCTTCCAGAACAAAGTGTGCACAGCTTCAAGTCTTGAGAAAGGAATTCGAGATGCTGCAAATGAAGGAAGGTGAATCTGTGACTAGCTATTTCGCAAAGACGATGGTTGTGGCCAACAAAATGCGGTTCCACGGTGAAAAGATGGAGGATGTTGTCATTGTTGAGAAGGTATTGAGATCTATGGCACCTAAGTTCAATTATGTTGTTTGTTCAATTGCAGAATCTAAAGATGTAGATACACTCTCCCTTGATGAGCTCCAAAGTTCGTTGTTGGTTCATGAACAAAACATGGATCGAGATTCAACAACAGAGGAACAAGCGTTAAAGGCTTCTACCTCTACTTCTTCCTGCAATTTCAGAGGACCATGACGAGGTCGAGGTTGGAGTAGAGGTACAGGCCGAAGCACAGGCAAAGGAAGAAGAGATCAAAGCAACAACAATGGTGGTACCAACCAATCTCAAGGCAGAGGTAGATGGCGTTATCAACAATTTGACAAGTCTAAGATCGAGTGTTTTCGATGTCATAAACTTGGTCATTACCAGTCTGAATGTTACACCAAGCTACCCCACAACAGAGATAAGGAAGAGACTTCACATTTTGTTGAAAAAAATGAAGTCGAAACACTATTGATGGCTGCCCAAGATAGCAAGGAACCAGAACCCGATATTTGGTACGTTGATACGGGTTGCAGCAACCACATGAGTGGGAGTAAGTCTTCTTTTTCTCATCTAAATGAAGATTTTCATTCCACGGTCAGTTTGGGTGATTTATCTATTGTAAAAGTAATGGGAAAAGGGGATATTAAGATAAAAACTAAAAATGGATTTGTGGAAACGATTTCCAACGTCTTGTTTGTTTCTAGTTTAAAGAGTAATTTGTTGAGTGTTGGTCAATTACTAGAAAAGGGTTATGTTATTACTCTTAAAGATGATTCTTGTGAAATTTATGATCTTATTAGAGGAGCTATTGCAGTAGTTCCTATGTCTGCAAACAGATTGTTTCCTTTGAAGATTGAAAGTACTCAACCTTGTTTAATGGCTGAAATTAAAGATCCCTCATGGTTGTGGCATTTTCGCTATGGCCACTTGAGTTTTAGTGGTTTGATGACCTTGAAAAAGAAGAACATGGTCAGCTGTCTTCCTCAGATTATTTCACCTACTCAAGTATGTGAAGAATGTTTTGTTGGCAAACAACATCGTTCTAAATTTGAAAACGGGAAGTCTTGGAGAGCAAAACATGTTTTGGAGTAGGTGCATTCAGATATTTGTGGGCCAATAAACCCAATTTTAAATGAAGGTAAGAGATACATTATTACCTTCACTGATGATTTTTCTAGAAAAACTTGGGTCTATTTTTTACAGGAAAAATCAGAAGCTTATTCTACATTTAAAAGCTTCAAAGCCCATGTGGAAAATGAAGCAAGCAAAACCATAAAGACTCTTCGTACAGATCGTCGGGCGAATATTGCTCAAAAGAATTTGAAATTTTTTGTGCAAAGCATGGCATTCGAAGAGAGCTTACGGCACCCTACACACCACAACAAAATGTTGTGTCCGAGAGGAAAAATAGAACCATTATCAACATGGTTAGAAGCTTGTTGGCAAGAGGAGGAATCCCGAAGACTTTTTGGCTTGAAGCGGTAAATTGGAGTGTTCATATTATTAACAGAAGTCCAACTTTTGCTGTTAAAAATATGACACCAGAAGAAGCTTGGAGTGGAAGAAGACCTACTGTGGATCATTTCAGAATTTTTGGGTGCATCGCATATGCTCATGTCACAAATGTAAGGAGGAAGAAGCTGGATGATAAGGCTGATAAATGCATCTTTCTCGGCGTAAGTGAAACATCTAAAGCATTTAAATTATTTAATCCACTAACAAAGAAGATAGTGATTAGCAGGGACGTAGTTTTCGATGAAGAAAACATATGGGATTGGAATAGGCAGTAGCCTACCCAAGTTCTTACAGATGATAATGATAACGAGGAGCAAATTTCAGCCCCTCTTGTTGTTGAAAATGAAACTCCAACAACCGATGTAGTCTCACCAACAGTCACAGAAGTTAATGAAGAACAAGCACAATCTCTGCGTCGTGTCAGAAAAAGGCCTGCTTGGATGGAAGATTACGAGGATGCTATCAAAGAAGAAAAGTGGAGAAAAGCTATGGATGAGGAGATTGATTCCATTGAGAAACAATACTTGGGAGTTATCTGATCTTCCAGAAGGTCAGAAAACGATTGGTGTTAAGTGGGTATTCAAAACGAAGTTGAAAGAAAATGGCGAGATTGACAAGCACAAGGCGCGTTTAGTGGCTAAAGGATACAAACAGCAATATGAAGTCGACTATAACGAGGTTTTTTCTTCAGTTGCAAGACATGACACGATCAGATTGGTGGTAGCATTGGCAGCTCAAAATTTTTGGCCTATCTTCCATCTAGATGTCAAATCGGCATTCTTACATGGTTATCTGAAGGAAGAGGTATTTATTGACCAACCCCCTGGTTATGTTGCAATTGGAAATGAGAATAAAGTTTTCAAATTAAAGAAAGCTCTTTACGGGATAAAGCAAGCCCCTCGTGCATGATATAGTCGCATTGAATCTTATTTTCTTAAAGTTGGATTTTCTAAATGCCCCCATGAGTATACACTTTTCATCAAGGTTGGATATAATGGCAAAATTCTCATAATTTGCTTATATGTTGATGACCTTATTTTTACTGGAAATTGTGATGTCATGTTTAAGAATTTAAGAAATCCATGATGGATGAGTTTGAAATGTCTGATCTTCGTATGATGCATTATTATCTTGGAATAGAAGTGCTACAATCAAAGGCTGGTATTTTTATCTCTCAAAAGAAATATGAGGGAGATATTCTTGATAGATTTCAGATGAAGGATTGCAATCCTGTAAACACTCCAATTGAGTTTGGTTTGAAGCTCCATAAAGATCGTGAAGGGAAGAAGGTGGACAGCACACTTCACAAGCAAATTGTTGGCAGTTTGAAGTATCTAACTGCAACAAGGCCAGACATAATGTATTTAGTGAGTTTAATCAGCAGATACATGGAACATCCTATAGAAATGCACTTGTTAGCAGCCAAGAGAATTCTCTGTTACTTGCAAAGGACGAGAGATTTTGGATTGTTTTACAAGAAGGGTAGCATGTCAGAATTGTTCGGTTTTGCTGATAGTGATTATGCAGGAGATCAAGATGATAGGAAAAGCACCTCGGGCTACTTTTTTCTGTATGGGACGAGTTTCATTTCGTGGTCATCGAAGAAGCAACCAATCGTCACTCTTTCAAGCACAGAAGCTGAATTTGTTGCTGCAACAGCTCGTTCTTGTCAAGCAATTTGGCTTCGGAGAATTCTAGAGGAGTTGAAATTCAAGCAATCAGGAGCAACCACGATTTTCTATGACAACACTTCAGCCATTAAGTTGTCCAAAAATCCTGTGCTACATGGAAGAAGCAAGCATATTGACGTGAAGTACTATTTTCTAAGAGATCTTAGCAATGACGGCACCATTGATCTGAAATACTGCAAAAGCGAGGAACAACTGGCTGACATACTAACAAAACCTCTCAAGATTTCGGCTTTCCAAAATTTGAGAAGGTTGATGGGTATGTGCACTTTGAAGGACGTTGATGTTGTTAACTGAAGCACTGTAGTGTTCAGTTTAAGGGAGGGATTGTTAGCATAATAACTATTTTTAATTTTTTACTAATTAATGTCATATGTTAAGTAAATATTGTCCTAAGTCTTTAGGAAACTAGTTGATCACTTAATTAGTTGTGGAGTGCTATTTTTGTCTAATTTGGTTATGTATTTGCCTAAATAAATAGGTCCTGTATTCTCAATTCAAAGTAGTGAAAATCGTTCCTTCCTCAGATATTTGTTGTCCCCTGTGTTTATTTTTTTTCTTTTTAACAGGAACAATGAACGTTACTTTGGTCTAGAACGAAGTCGAACAGAGAATTCTGAAGGCAACGATGGGGGAAAATATAGTGACGAACGAGAATGAGACGG

mRNA sequence

ATGGTTAGAAGCTTGTTGGCAAGAGGAGGAATCCCGAAGACTTTTTGGCTTGAAGCGGTAAATTGGAGTGTTCATATTATTAACAGAAGTCCAACTTTTGCTGTTAAAAATATGACACCAGAAGAAGCTTGGAGTGGAAGAAGACCTACTGTGGATCATTTCAGAATTTTTGGGTGCATCGCATATGCTCATGTCACAAATGTAAGGAGGAAGAAGCTGGATGATAAGGCTGATAAATGCATCTTTCTCGGCGTAAGTGAAACATCTAAAGCATTTAAATTATTTAATCCACTAACAAAGAAGATAGTGATTAGCAGGGACGTAGTTTTCGATGAAGAAAACATATGGGATTGGAATAGGCAGTAG

Coding sequence (CDS)

ATGGTTAGAAGCTTGTTGGCAAGAGGAGGAATCCCGAAGACTTTTTGGCTTGAAGCGGTAAATTGGAGTGTTCATATTATTAACAGAAGTCCAACTTTTGCTGTTAAAAATATGACACCAGAAGAAGCTTGGAGTGGAAGAAGACCTACTGTGGATCATTTCAGAATTTTTGGGTGCATCGCATATGCTCATGTCACAAATGTAAGGAGGAAGAAGCTGGATGATAAGGCTGATAAATGCATCTTTCTCGGCGTAAGTGAAACATCTAAAGCATTTAAATTATTTAATCCACTAACAAAGAAGATAGTGATTAGCAGGGACGTAGTTTTCGATGAAGAAAACATATGGGATTGGAATAGGCAGTAG

Protein sequence

MVRSLLARGGIPKTFWLEAVNWSVHIINRSPTFAVKNMTPEEAWSGRRPTVDHFRIFGCIAYAHVTNVRRKKLDDKADKCIFLGVSETSKAFKLFNPLTKKIVISRDVVFDEENIWDWNRQ

Homology

[Close]

BLAST of MC03g_new0230 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.9e-25
Identity = 48/114 (42.11%), Postives = 74/114 (64.91%), Query Frame = 0


Query: 2   VRSLLARGGIPKTFWLEAVNWSVHIINRSPTFAVKNMTPEEAWSGRRPTVDHFRIFGCIA 61
           VRS+L    +PK+FW EAV  + ++INRSP+  +    PE  W+ +  +  H ++FGC A
Sbjct: 596 VRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRA 655

Query: 62  YAHVTNVRRKKLDDKADKCIFLGVSETSKAFKLFNPLTKKIVISRDVVFDEENI 116
           +AHV   +R KLDDK+  CIF+G  +    ++L++P+ KK++ SRDVVF E  +
Sbjct: 656 FAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEV 709

[Close]

BLAST of MC03g_new0230 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 92.4 bits (228), Expect = 3.7e-18
Identity = 43/115 (37.39%), Postives = 72/115 (62.61%), Query Frame = 0


Query: 3   RSLLARGGIPKTFWLEAVNWSVHIINRSPTFAV--KNMTPEEAWSGRRPTVDHFRIFGCI 62
           R++++   + K+FW EAV  + ++INR P+ A+   + TP E W  ++P + H R+FG  
Sbjct: 597 RTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGAT 656

Query: 63  AYAHVTNVRRKKLDDKADKCIFLGVSETSKAFKLFNPLTKKIVISRDVVFDEENI 116
            Y H+ N ++ K DDK+ K IF+G       FKL++ + +K +++RDVV DE N+
Sbjct: 657 VYVHIKN-KQGKFDDKSFKSIFVGYE--PNGFKLWDAVNEKFIVARDVVVDETNM 708

[Close]

BLAST of MC03g_new0230 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.8e-17
Identity = 43/109 (39.45%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 4   SLLARGGIPKTFWLEAVNWSVHIINRSPTFAVKNMTPEEAWSGRRPTVDHFRIFGCIAYA 63
           +LL+   IPKT+W  A   +V++INR PT  ++  +P +   G  P  D  R+FGC  Y 
Sbjct: 638 TLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYP 697

Query: 64  HVTNVRRKKLDDKADKCIFLGVSETSKAFKLFNPLTKKIVISRDVVFDE 113
            +    + KLDDK+ +C+FLG S T  A+   +  T ++ ISR V FDE
Sbjct: 698 WLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDE 746

[Close]

BLAST of MC03g_new0230 vs. ExPASy Swiss-Prot
Match: P92512 (Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana OX=3702 GN=AtMg00710 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.0e-12
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 2  VRSLLARGGIPKTFWLEAVNWSVHIINRSPTFAVKNMTPEEAWSGRRPTVDHFRIFGCIA 61
          VRS+L   G+PKTF  +A N +VHIIN+ P+ A+    P+E W    PT  + R FGC+A
Sbjct: 9  VRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYLRRFGCVA 68

Query: 62 YAHVTNVRRKKLDDKADK 80
          Y H    + K    K ++
Sbjct: 69 YIHCDEGKLKPRAKKGEE 86

[Close]

BLAST of MC03g_new0230 vs. NCBI nr
Match: XP_030529118.1 (uncharacterized protein LOC115739938 [Rhodamnia argentea])

HSP 1 Score: 224 bits (572), Expect = 9.40e-70
Identity = 101/121 (83.47%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MVRSLLARGGIPKTFWLEAVNWSVHIINRSPTFAVKNMTPEEAWSGRRPTVDHFRIFGCI 60
           M RSLLARG +PKTFW EAVNWS+H++NRSPTFAV+NMT EEAWSGRRP VDHF+IFGCI
Sbjct: 244 MERSLLARGKVPKTFWPEAVNWSIHVLNRSPTFAVQNMTSEEAWSGRRPVVDHFKIFGCI 303

Query: 61  AYAHVTNVRRKKLDDKADKCIFLGVSETSKAFKLFNPLTKKIVISRDVVFDEENIWDWNR 120
           AYAHV N +RKKLDDKA+KC+FLGVS+ SKA+KLFNPLTKKIV SRDVVFDEENIWDWNR
Sbjct: 304 AYAHVPNEKRKKLDDKAEKCVFLGVSDASKAYKLFNPLTKKIVTSRDVVFDEENIWDWNR 363

[Close]

BLAST of MC03g_new0230 vs. NCBI nr
Match: MCH99127.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Trifolium medium])

HSP 1 Score: 203 bits (517), Expect = 3.80e-63
Identity = 88/119 (73.95%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 1   MVRSLLARGGIPKTFWLEAVNWSVHIINRSPTFAVKNMTPEEAWSGRRPTVDHFRIFGCI 60
           MVRS+L + GIPKTFW EAVNWS+H++NRSPT AVKN+TP+EAWS  RP+VDHFR+FGCI
Sbjct: 3   MVRSMLVKRGIPKTFWAEAVNWSIHVLNRSPTLAVKNITPQEAWSKVRPSVDHFRVFGCI 62

Query: 61  AYAHVTNVRRKKLDDKADKCIFLGVSETSKAFKLFNPLTKKIVISRDVVFDEENIWDWN 119
           +YAHV N +R KLDDK+ KCIF+GVSE SKA+KL+NP+TKKI+ISRDV+FDEEN WDW+
Sbjct: 63  SYAHVPNEKRTKLDDKSVKCIFIGVSEESKAYKLYNPVTKKIIISRDVLFDEENTWDWS 121

[Close]

BLAST of MC03g_new0230 vs. NCBI nr
Match: TQD88564.1 (hypothetical protein C1H46_025883 [Malus baccata])

HSP 1 Score: 203 bits (516), Expect = 1.00e-62
Identity = 87/118 (73.73%), Postives = 107/118 (90.68%), Query Frame = 0


Query: 1   MVRSLLARGGIPKTFWLEAVNWSVHIINRSPTFAVKNMTPEEAWSGRRPTVDHFRIFGCI 60
           MVRSLL +G IPK FW E V WSVHI+NRSPTF+VKNMTP+EAWSG++P VDHF++FGCI
Sbjct: 136 MVRSLLVKGSIPKKFWPEVVLWSVHILNRSPTFSVKNMTPQEAWSGQKPLVDHFKVFGCI 195

Query: 61  AYAHVTNVRRKKLDDKADKCIFLGVSETSKAFKLFNPLTKKIVISRDVVFDEENIWDW 118
           AYAH+ + +RKKLDDK++KCIFLGVSE SKA+KL+NP+TKKIV+SRDV+FDE+ IW+W
Sbjct: 196 AYAHIPDEKRKKLDDKSEKCIFLGVSEVSKAYKLYNPVTKKIVVSRDVIFDEDTIWNW 253

[Close]

BLAST of MC03g_new0230 vs. NCBI nr
Match: RVW98955.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 217 bits (553), Expect = 1.03e-62
Identity = 96/121 (79.34%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MVRSLLARGGIPKTFWLEAVNWSVHIINRSPTFAVKNMTPEEAWSGRRPTVDHFRIFGCI 60
           MVRSLLARG IPK+FW +AVNWS+H++NRSPTF V+NMTPEEAWSGR+PTVDHF+IFGCI
Sbjct: 516 MVRSLLARGKIPKSFWAKAVNWSIHVLNRSPTFFVQNMTPEEAWSGRKPTVDHFKIFGCI 575

Query: 61  AYAHVTNVRRKKLDDKADKCIFLGVSETSKAFKLFNPLTKKIVISRDVVFDEENIWDWNR 120
           AYAHV + +RKKLDDK +KC+FLGVSE SKA+KLFNPLTKKIVISRDV+FDEE+ W+WN 
Sbjct: 576 AYAHVPDEKRKKLDDKGEKCVFLGVSEASKAYKLFNPLTKKIVISRDVIFDEESTWNWNG 635

[Close]

BLAST of MC03g_new0230 vs. NCBI nr
Match: MCH98048.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Trifolium medium])

HSP 1 Score: 203 bits (517), Expect = 1.03e-62
Identity = 88/119 (73.95%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 1   MVRSLLARGGIPKTFWLEAVNWSVHIINRSPTFAVKNMTPEEAWSGRRPTVDHFRIFGCI 60
           MVRS+L + GIPKTFW EAVNWS+H++NRSPT AVKN+TP+EAWS  RP+VDHFR+FGCI
Sbjct: 124 MVRSMLVKRGIPKTFWAEAVNWSIHVLNRSPTLAVKNITPQEAWSKVRPSVDHFRVFGCI 183

Query: 61  AYAHVTNVRRKKLDDKADKCIFLGVSETSKAFKLFNPLTKKIVISRDVVFDEENIWDWN 119
           +YAHV N +R KLDDK+ KCIF+GVSE SKA+KL+NP+TKKI+ISRDV+FDEEN WDW+
Sbjct: 184 SYAHVPNEKRTKLDDKSVKCIFIGVSEESKAYKLYNPVTKKIIISRDVLFDEENTWDWS 242

[Close]

BLAST of MC03g_new0230 vs. ExPASy TrEMBL
Match: A0A392NGZ4 (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 203 bits (517), Expect = 1.84e-63
Identity = 88/119 (73.95%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 1   MVRSLLARGGIPKTFWLEAVNWSVHIINRSPTFAVKNMTPEEAWSGRRPTVDHFRIFGCI 60
           MVRS+L + GIPKTFW EAVNWS+H++NRSPT AVKN+TP+EAWS  RP+VDHFR+FGCI
Sbjct: 3   MVRSMLVKRGIPKTFWAEAVNWSIHVLNRSPTLAVKNITPQEAWSKVRPSVDHFRVFGCI 62

Query: 61  AYAHVTNVRRKKLDDKADKCIFLGVSETSKAFKLFNPLTKKIVISRDVVFDEENIWDWN 119
           +YAHV N +R KLDDK+ KCIF+GVSE SKA+KL+NP+TKKI+ISRDV+FDEEN WDW+
Sbjct: 63  SYAHVPNEKRTKLDDKSVKCIFIGVSEESKAYKLYNPVTKKIIISRDVLFDEENTWDWS 121

[Close]

BLAST of MC03g_new0230 vs. ExPASy TrEMBL
Match: A0A540LPY8 (Integrase catalytic domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_025883 PE=4 SV=1)

HSP 1 Score: 203 bits (516), Expect = 4.86e-63
Identity = 87/118 (73.73%), Postives = 107/118 (90.68%), Query Frame = 0


Query: 1   MVRSLLARGGIPKTFWLEAVNWSVHIINRSPTFAVKNMTPEEAWSGRRPTVDHFRIFGCI 60
           MVRSLL +G IPK FW E V WSVHI+NRSPTF+VKNMTP+EAWSG++P VDHF++FGCI
Sbjct: 136 MVRSLLVKGSIPKKFWPEVVLWSVHILNRSPTFSVKNMTPQEAWSGQKPLVDHFKVFGCI 195

Query: 61  AYAHVTNVRRKKLDDKADKCIFLGVSETSKAFKLFNPLTKKIVISRDVVFDEENIWDW 118
           AYAH+ + +RKKLDDK++KCIFLGVSE SKA+KL+NP+TKKIV+SRDV+FDE+ IW+W
Sbjct: 196 AYAHIPDEKRKKLDDKSEKCIFLGVSEVSKAYKLYNPVTKKIVVSRDVIFDEDTIWNW 253

[Close]

BLAST of MC03g_new0230 vs. ExPASy TrEMBL
Match: A0A438IQQ3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1910 PE=4 SV=1)

HSP 1 Score: 217 bits (553), Expect = 4.98e-63
Identity = 96/121 (79.34%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MVRSLLARGGIPKTFWLEAVNWSVHIINRSPTFAVKNMTPEEAWSGRRPTVDHFRIFGCI 60
           MVRSLLARG IPK+FW +AVNWS+H++NRSPTF V+NMTPEEAWSGR+PTVDHF+IFGCI
Sbjct: 516 MVRSLLARGKIPKSFWAKAVNWSIHVLNRSPTFFVQNMTPEEAWSGRKPTVDHFKIFGCI 575

Query: 61  AYAHVTNVRRKKLDDKADKCIFLGVSETSKAFKLFNPLTKKIVISRDVVFDEENIWDWNR 120
           AYAHV + +RKKLDDK +KC+FLGVSE SKA+KLFNPLTKKIVISRDV+FDEE+ W+WN 
Sbjct: 576 AYAHVPDEKRKKLDDKGEKCVFLGVSEASKAYKLFNPLTKKIVISRDVIFDEESTWNWNG 635

[Close]

BLAST of MC03g_new0230 vs. ExPASy TrEMBL
Match: A0A392NG35 (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0019047 PE=4 SV=1)

HSP 1 Score: 203 bits (517), Expect = 5.01e-63
Identity = 88/119 (73.95%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 1   MVRSLLARGGIPKTFWLEAVNWSVHIINRSPTFAVKNMTPEEAWSGRRPTVDHFRIFGCI 60
           MVRS+L + GIPKTFW EAVNWS+H++NRSPT AVKN+TP+EAWS  RP+VDHFR+FGCI
Sbjct: 124 MVRSMLVKRGIPKTFWAEAVNWSIHVLNRSPTLAVKNITPQEAWSKVRPSVDHFRVFGCI 183

Query: 61  AYAHVTNVRRKKLDDKADKCIFLGVSETSKAFKLFNPLTKKIVISRDVVFDEENIWDWN 119
           +YAHV N +R KLDDK+ KCIF+GVSE SKA+KL+NP+TKKI+ISRDV+FDEEN WDW+
Sbjct: 184 SYAHVPNEKRTKLDDKSVKCIFIGVSEESKAYKLYNPVTKKIIISRDVLFDEENTWDWS 242

[Close]

BLAST of MC03g_new0230 vs. ExPASy TrEMBL
Match: A0A151QLF6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_048906 PE=4 SV=1)

HSP 1 Score: 197 bits (501), Expect = 9.06e-63
Identity = 87/120 (72.50%), Postives = 104/120 (86.67%), Query Frame = 0


Query: 1   MVRSLLARGGIPKTFWLEAVNWSVHIINRSPTFAVKNMTPEEAWSGRRPTVDHFRIFGCI 60
           M+RSLL + G+ K FW EA+NWSVHI+NRSPTF VKNMTPEEAWS R+P VDHFRIFGCI
Sbjct: 29  MLRSLLTKSGVSKDFWPEAINWSVHILNRSPTFVVKNMTPEEAWSERKPIVDHFRIFGCI 88

Query: 61  AYAHVTNVRRKKLDDKADKCIFLGVSETSKAFKLFNPLTKKIVISRDVVFDEENIWDWNR 120
           AYAH+ + +R KLDDK +KCIFLGVS+ SKA+KL+NP+TKKI+ISRDVVF+EE  W+ NR
Sbjct: 89  AYAHIPDKKRSKLDDKGEKCIFLGVSDQSKAYKLYNPITKKIIISRDVVFNEERFWENNR 148

[Close]

BLAST of MC03g_new0230 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 72.8 bits (177), Expect = 2.1e-13
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 2  VRSLLARGGIPKTFWLEAVNWSVHIINRSPTFAVKNMTPEEAWSGRRPTVDHFRIFGCIA 61
          VRS+L   G+PKTF  +A N +VHIIN+ P+ A+    P+E W    PT  + R FGC+A
Sbjct: 9  VRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYLRRFGCVA 68

Query: 62 YAHVTNVRRKKLDDKADK 80
          Y H    + K    K ++
Sbjct: 69 YIHCDEGKLKPRAKKGEE 86

The following BLAST results are available for this feature:

BLAST of MC03g_new0230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.9e-25	42.11	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.7e-18	37.39	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	1.8e-17	39.45	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92512	3.0e-12	41.03	Uncharacterized mitochondrial protein AtMg00710 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of MC03g_new0230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_030529118.1	9.40e-70	83.47	uncharacterized protein LOC115739938 [Rhodamnia argentea]	[more]
MCH99127.1	3.80e-63	73.95	retrovirus-related pol polyprotein from transposon tnt 1-94 [Trifolium medium]	[more]
TQD88564.1	1.00e-62	73.73	hypothetical protein C1H46_025883 [Malus baccata]	[more]
RVW98955.1	1.03e-62	79.34	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
MCH98048.1	1.03e-62	73.95	retrovirus-related pol polyprotein from transposon tnt 1-94 [Trifolium medium]	[more]

BLAST of MC03g_new0230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A392NGZ4	1.84e-63	73.95	Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) OS=Trifol...	[more]
A0A540LPY8	4.86e-63	73.73	Integrase catalytic domain-containing protein OS=Malus baccata OX=106549 GN=C1H4...	[more]
A0A438IQQ3	4.98e-63	79.34	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A392NG35	5.01e-63	73.95	Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) OS=Trifol...	[more]
A0A151QLF6	9.06e-63	72.50	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu...	[more]

BLAST of MC03g_new0230 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00710.1	2.1e-13	41.03	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 2..116
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 7..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC03g_new0230.1	MC03g_new0230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding