MC03g_new0095 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC03g_new0095
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Retrovirus-related Pol polyprotein from transposon 17.6
Location	MC03: 4529799 .. 4531713 (+)
RNA-Seq Expression	MC03g_new0095
Synteny	MC03g_new0095

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATAAGAAAAGGAAAGAAAAGAAAAAAAAAGAAGAAAGAACGAAGAAAAGAAAGAAGAGTGAAGAAAAGAGAGAAAACGAATGAGAAGAAGAAAACGAAAAGAACAGAAAATAAATGAAAGAGAAATGAAAGACGTGGTTTTTGAACAGGGGAGGAGAGGAACAAATTGAAGGTTGAGGAGAGGAGGGAAATCCTTGTGTTTCAGAGCTAAGACTTGGGTTTCAAATTTGGTAAGTAATCTATGTTTGTGATTAAGAAAGTTTTGGAAATAAACAAGGAAGAAATTGGATGTTGAAACGTTTTTATGGGTTTCCTTCTATGAGAAACCCTTTGAAGTTGTGAATTCTTTGGTGGTTATTGTTATGCTTAAGGAATTGTTAAAAAGAAATTGTGTATTTTCAACTCTCCTAATCGTTGTGCTTTGTGGGTTTTCTTTAGGTGTATTGTGGGGAATTAATGACTGTAGATGGGTAACAAAAATGGACAAAGACGAGAGGGTTTGAAGATGGAGAAGAAGGATAAAGAAATATAGAGAAATTAAGTGTTAATCTTTGATCTTTGGGTACACATTAAGGAGGCTATGTTGGTTTTTGAAGAAATTGCAGAAAAAGAAAGGCTAAAAGAAAAAAAAAGGGACTGTGAGGAAGAAAGAAAAAGGAAGAAAGGGGCGTGCGTTTTGGGTGGAAGAAGAGAACATGAGTTGTTGAAGAGAGAAAAATGAATTAATGTGGATTAGAATTAAATAAGAAAAAGAAAATAATTTTGTTAAAAAAAAAGGAAGGTGTTTCAAGTTAGTAGATGAAAAGAACTGAAAGTGAATGAGTTTTGTGGGACCCATTTGTAAGGTTGTAAGAAACAGAAGTAGTGGGTTTTTAAGGAAGAGAGAGAATGGAGAATTTTGGATAATTGGTTTTGTTTGAATATATTGTGATTAAAGTTTGAGAATCGAGAATTCAAAATGATGCCTTATGGATTGGGTAATGCTCTAGCCACTTTTTCGAGATGAATGATGGCCATCTTTTCCGAGCTGGTTGAATTCGTAGTGGAAATTTTTATGGATGACTTCTCGGTATTTGGAGAAAGCTTTACCATCTGTTTGGAGAATCTGCAACGGGTTTTGAAGCATTGTGAAGAGACTAATCTCGTGCTAAACTGGGAAAAATGCCATTTCATGGTCCAATAGGGACTTGTGCTAGGACACAAGATTTCAAGGAAAGGGCTGGAAGTAGATCGAGCGAAGATCGAAGTCATTGAGCAATTACCACAGCCCACTATAGTTAGAGGAGTCAGAAGCTTCTTGAGACATGCAGGATTTTACCGACCATTTATTAAGGATTTTTCTAAACTTGCTAAACCTCTTTGTTCCTTATTAGAAGCTGATAGAGTGTTTAAGTTCTCTCCTAATTGTAGCAGGCATTCTCTACGTTGAAACATGCTTTAACGACTGCTCCCATAATTCAAGCTCTTAATTGGAAGCTTCCGTTTCAACTGATGTGTGATGCGAGCGACTTTGCAGTTGGAGCTGTTTTGGTGCAAAGAAAGGATAAAGTGCTTCACCCCATATATTATGGTAGTAAGACACGAGTAAAAGCTCAGATTAACTATACCACCACGGAAAATGAGTTGCTGGCAGTAGTTTTTGCGTCCGAAAAATTTAGGTCCTATCTGGTGGCCACTAAAGTCACAATGCATACCGAGTGTCATGGTCATGCTTGTCCAGGGCCTGTTGCCCGTGGCCGCATGCCCATAACAACCTCTTTCCACATGCTTTCATGCCATGTATTTAGTTTTGCTTGTTATTTAGTTTTCCTTGTACTTTTGGTGGCGAGTGACTCCTCGCCACTTTGCATGTTCACGCCTGCCAAAGGCAAAATGCTTTATAATCTACCTTAGGGGGGTACACCTAGTCTCCTCC

mRNA sequence

ATGATGGCCATCTTTTCCGAGCTGGTTGAATTCGTAGTGGAAATTTTTATGGATGACTTCTCGGTATTTGGAGAAAGCTTTACCATCTGTTTGGAGAATCTGCAACGGGTTTTGAAGCATTGTGAAGAGACTAATCTCGTGCTAAACTGGGAAAAATGCCATTTCATGGTCCAATAG

Coding sequence (CDS)

ATGATGGCCATCTTTTCCGAGCTGGTTGAATTCGTAGTGGAAATTTTTATGGATGACTTCTCGGTATTTGGAGAAAGCTTTACCATCTGTTTGGAGAATCTGCAACGGGTTTTGAAGCATTGTGAAGAGACTAATCTCGTGCTAAACTGGGAAAAATGCCATTTCATGGTCCAATAG

Protein sequence

MMAIFSELVEFVVEIFMDDFSVFGESFTICLENLQRVLKHCEETNLVLNWEKCHFMVQ

Homology

[Close]

BLAST of MC03g_new0095 vs. NCBI nr
Match: GGM27180.1 (hypothetical protein GCM10010129_84280 [Streptomyces fumigatiscleroticus])

HSP 1 Score: 95.1 bits (235), Expect = 4.28e-24
Identity = 44/57 (77.19%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 2  MAIFSELVEFVVEIFMDDFSVFGESFTICLENLQRVLKHCEETNLVLNWEKCHFMVQ 58
          MAIF+E+VE  VE+FMD+FSVFG+SF +CLENL +VLK CEETNLVLNWEKCHFMV+
Sbjct: 1  MAIFTEMVEHFVEVFMDNFSVFGDSFGLCLENLAKVLKRCEETNLVLNWEKCHFMVK 57

[Close]

BLAST of MC03g_new0095 vs. NCBI nr
Match: XP_033138986.1 (uncharacterized mitochondrial protein AtMg00860-like [Brassica rapa])

HSP 1 Score: 96.7 bits (239), Expect = 7.41e-23
Identity = 45/58 (77.59%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1  MMAIFSELVEFVVEIFMDDFSVFGESFTICLENLQRVLKHCEETNLVLNWEKCHFMVQ 58
          MM+IFS+L+E VVE+FMDDFSV+G SF+ CL NL RVLK CEETNLVLNWEKCHFMV+
Sbjct: 1  MMSIFSDLIEDVVEVFMDDFSVYGSSFSACLSNLSRVLKRCEETNLVLNWEKCHFMVK 58

[Close]

BLAST of MC03g_new0095 vs. NCBI nr
Match: WP_189293749.1 (reverse transcriptase family protein, partial [Streptomyces fumigatiscleroticus])

HSP 1 Score: 96.7 bits (239), Expect = 1.22e-22
Identity = 45/58 (77.59%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1   MMAIFSELVEFVVEIFMDDFSVFGESFTICLENLQRVLKHCEETNLVLNWEKCHFMVQ 58
           MMAIF+E+VE  VE+FMD+FSVFG+SF +CLENL +VLK CEETNLVLNWEKCHFMV+
Sbjct: 191 MMAIFTEMVEHFVEVFMDNFSVFGDSFGLCLENLAKVLKRCEETNLVLNWEKCHFMVK 248

[Close]

BLAST of MC03g_new0095 vs. NCBI nr
Match: XP_030477908.1 (uncharacterized protein LOC115694945 [Cannabis sativa])

HSP 1 Score: 97.8 bits (242), Expect = 6.75e-22
Identity = 44/58 (75.86%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1   MMAIFSELVEFVVEIFMDDFSVFGESFTICLENLQRVLKHCEETNLVLNWEKCHFMVQ 58
           MMAIFS++ E ++EIFMDDFS++G+SF +CLENL+RVL  CEETNLVLNWEKCHFMVQ
Sbjct: 608 MMAIFSDMAESILEIFMDDFSIYGDSFGVCLENLERVLARCEETNLVLNWEKCHFMVQ 665

[Close]

BLAST of MC03g_new0095 vs. NCBI nr
Match: KAG7594900.1 (Reverse transcriptase domain [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 97.4 bits (241), Expect = 9.29e-22
Identity = 46/58 (79.31%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1    MMAIFSELVEFVVEIFMDDFSVFGESFTICLENLQRVLKHCEETNLVLNWEKCHFMVQ 58
            MM+IFS+L+E VVE+FMDDFSV+G+SF+ CL NL RVLK CEETNLVLNWEKCHFMVQ
Sbjct: 1157 MMSIFSDLIENVVEVFMDDFSVYGDSFSSCLSNLCRVLKRCEETNLVLNWEKCHFMVQ 1214

[Close]

BLAST of MC03g_new0095 vs. ExPASy TrEMBL
Match: A0A1U8NJ30 (RNA-directed DNA polymerase homolog OS=Gossypium hirsutum OX=3635 GN=LOC107948039 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.31e-22
Identity = 45/58 (77.59%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 1   MMAIFSELVEFVVEIFMDDFSVFGESFTICLENLQRVLKHCEETNLVLNWEKCHFMVQ 58
           MMAIF ELVE V+E+FMDDFS+FG SF  CL+NL+RVL+ CEET LVLNWEKCHFMVQ
Sbjct: 145 MMAIFDELVEDVMEVFMDDFSIFGNSFHHCLKNLKRVLRRCEETKLVLNWEKCHFMVQ 202

[Close]

BLAST of MC03g_new0095 vs. ExPASy TrEMBL
Match: A0A392SLH7 (Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.86e-22
Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1  MMAIFSELVEFVVEIFMDDFSVFGESFTICLENLQRVLKHCEETNLVLNWEKCHFMVQ 58
          M+AIFS+++E  +E+FMDDFSVFG+SF  CL NLQ+VLK C  TNLVLNWEKCHFMVQ
Sbjct: 1  MLAIFSDMMEDTMEVFMDDFSVFGKSFDSCLSNLQKVLKRCIGTNLVLNWEKCHFMVQ 58

[Close]

BLAST of MC03g_new0095 vs. ExPASy TrEMBL
Match: A0A151RZ70 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cajanus cajan OX=3821 GN=KK1_030589 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.94e-22
Identity = 42/58 (72.41%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 1  MMAIFSELVEFVVEIFMDDFSVFGESFTICLENLQRVLKHCEETNLVLNWEKCHFMVQ 58
          M+AIF++LVE  +++FMDDFSVFG S+ +CLENL+ VLK C ETNLVLNWEKCHFMVQ
Sbjct: 16 MLAIFADLVEKCIKVFMDDFSVFGSSYDVCLENLELVLKRCIETNLVLNWEKCHFMVQ 73

[Close]

BLAST of MC03g_new0095 vs. ExPASy TrEMBL
Match: A0A6P6GDJ4 (Reverse transcriptase OS=Ziziphus jujuba OX=326968 GN=LOC112492555 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 6.13e-22
Identity = 45/58 (77.59%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1    MMAIFSELVEFVVEIFMDDFSVFGESFTICLENLQRVLKHCEETNLVLNWEKCHFMVQ 58
            MM+IFS++VE ++EIFMDDFSVFG+SFT CL+NL RVL  C+ETNLVLNWEKCHFMVQ
Sbjct: 1010 MMSIFSDMVEDIIEIFMDDFSVFGDSFTSCLQNLSRVLLRCKETNLVLNWEKCHFMVQ 1067

[Close]

BLAST of MC03g_new0095 vs. ExPASy TrEMBL
Match: A0A151R0X7 (Reverse transcriptase domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_042800 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.54e-22
Identity = 40/58 (68.97%), Postives = 50/58 (86.21%), Query Frame = 0


Query: 1  MMAIFSELVEFVVEIFMDDFSVFGESFTICLENLQRVLKHCEETNLVLNWEKCHFMVQ 58
          M+AIF++LVE  +E+FMDDFS+FG S+ +CLENL+ VLK C + NLVLNWEKCHFMVQ
Sbjct: 1  MLAIFADLVEKCIEVFMDDFSIFGSSYDVCLENLELVLKRCIDKNLVLNWEKCHFMVQ 58

The following BLAST results are available for this feature:

BLAST of MC03g_new0095 vs.


Match Name	E-value	Identity	Description

BLAST of MC03g_new0095 vs. NCBI nr


Match Name	E-value	Identity	Description
GGM27180.1	4.28e-24	77.19	hypothetical protein GCM10010129_84280 [Streptomyces fumigatiscleroticus]	[more]
XP_033138986.1	7.41e-23	77.59	uncharacterized mitochondrial protein AtMg00860-like [Brassica rapa]	[more]
WP_189293749.1	1.22e-22	77.59	reverse transcriptase family protein, partial [Streptomyces fumigatiscleroticus]	[more]
XP_030477908.1	6.75e-22	75.86	uncharacterized protein LOC115694945 [Cannabis sativa]	[more]
KAG7594900.1	9.29e-22	79.31	Reverse transcriptase domain [Arabidopsis thaliana x Arabidopsis arenosa]	[more]

BLAST of MC03g_new0095 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1U8NJ30	4.31e-22	77.59	RNA-directed DNA polymerase homolog OS=Gossypium hirsutum OX=3635 GN=LOC10794803...	[more]
A0A392SLH7	4.86e-22	72.41	Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1	[more]
A0A151RZ70	5.94e-22	72.41	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cajanus cajan OX=3821...	[more]
A0A6P6GDJ4	6.13e-22	77.59	Reverse transcriptase OS=Ziziphus jujuba OX=326968 GN=LOC112492555 PE=4 SV=1	[more]
A0A151R0X7	6.54e-22	68.97	Reverse transcriptase domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_...	[more]

BLAST of MC03g_new0095 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..58 e-value: 9.2E-15 score: 56.7
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC03g_new0095.1	MC03g_new0095.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding