MC03g1322 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC03g1322
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	transcription factor PRE5-like
Location	MC03: 18897975 .. 18898172 (-)
RNA-Seq Expression	MC03g1322
Synteny	MC03g1322

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTCCGATATCAAAAAACTTGTCCTCAGATTGCAAACTTTACTCCCACGCCTTCACCAAAATATCGACTCCACGGTGGATATATCGGCGGCGGAGATATTGAAGGAGACGTGTGATTACATAAGGAAATTGCAGAGGGAAGTGGACGACCTAAGTCAAAGACTTTGCCAGCTCCTCGATTCAATGGGTGTT

mRNA sequence

ATGGCTTCCTCCGATATCAAAAAACTTGTCCTCAGATTGCAAACTTTACTCCCACGCCTTCACCAAAATATCGACTCCACGGTGGATATATCGGCGGCGGAGATATTGAAGGAGACGTGTGATTACATAAGGAAATTGCAGAGGGAAGTGGACGACCTAAGTCAAAGACTTTGCCAGCTCCTCGATTCAATGGGTGTT

Coding sequence (CDS)

ATGGCTTCCTCCGATATCAAAAAACTTGTCCTCAGATTGCAAACTTTACTCCCACGCCTTCACCAAAATATCGACTCCACGGTGGATATATCGGCGGCGGAGATATTGAAGGAGACGTGTGATTACATAAGGAAATTGCAGAGGGAAGTGGACGACCTAAGTCAAAGACTTTGCCAGCTCCTCGATTCAATGGGTGTT

Protein sequence

MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSMGV

Homology

[Close]

BLAST of MC03g1322 vs. ExPASy Swiss-Prot
Match: F4JCN9 (Transcription factor PRE4 OS=Arabidopsis thaliana OX=3702 GN=PRE4 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-08
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 1  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQL 60
          +    I  LVL+L  LLP L  N  S   +SA+ +L+ETC YIR L +EVDDLS+RL QL
Sbjct: 16 ITDEQINDLVLQLHRLLPELANNRRSG-KVSASRVLQETCSYIRNLSKEVDDLSERLSQL 75

Query: 61 LDS 64
          L+S
Sbjct: 76 LES 77

[Close]

BLAST of MC03g1322 vs. ExPASy Swiss-Prot
Match: Q9LJX1 (Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-08
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 9  LVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSM 65
          LV +L+  LP +H+   S   +SA+++L+ETC+YIRKL REVD+LS RL QLLDS+
Sbjct: 23 LVSKLRQFLPEIHERRRSD-KVSASKVLQETCNYIRKLHREVDNLSDRLSQLLDSV 77

[Close]

BLAST of MC03g1322 vs. ExPASy Swiss-Prot
Match: Q9CA64 (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.2e-08
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 1  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQL 60
          ++   I  L+++LQ LLP L  +  S   +SAA +L++TC+YIR L REVDDLS+RL +L
Sbjct: 17 ISEDQINDLIIKLQQLLPELRDSRRSD-KVSAARVLQDTCNYIRNLHREVDDLSERLSEL 76

Query: 61 L 62
          L
Sbjct: 77 L 76

[Close]

BLAST of MC03g1322 vs. ExPASy Swiss-Prot
Match: Q9LXG5 (Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-07
Identity = 28/64 (43.75%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 1  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQL 60
          ++   I  L+ +L+  +P + QN  S   +SA+++L+ETC+YIR L +E DDLS RL QL
Sbjct: 16 ISDDQITDLISKLRQSIPEIRQNRRSNT-VSASKVLQETCNYIRNLNKEADDLSDRLTQL 75

Query: 61 LDSM 65
          L+S+
Sbjct: 76 LESI 78

[Close]

BLAST of MC03g1322 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-07
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 1  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQL 60
          ++   I  LV +LQ L+P L +     V  SA+++L+ETC+YIR L REVDDLS RL +L
Sbjct: 17 ISDDQISDLVSKLQHLIPELRRRRSDKV--SASKVLQETCNYIRNLHREVDDLSDRLSEL 76

Query: 61 LDS 64
          L S
Sbjct: 77 LAS 77

[Close]

BLAST of MC03g1322 vs. NCBI nr
Match: XP_038895474.1 (transcription factor PRE5-like [Benincasa hispida])

HSP 1 Score: 82.8 bits (203), Expect = 2.19e-18
Identity = 43/68 (63.24%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 1   MASSDIKKLVLRLQTLLPRLHQ--NIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLC 60
           +A  D++ LV +LQTLLP L++  + DS V +SA +ILKETCDYI+KLQREVDDLS+RL 
Sbjct: 47  LADDDLQNLVFKLQTLLPHLNRKPDNDSAVSVSATDILKETCDYIKKLQREVDDLSERLW 106

Query: 61  QLLDSMGV 66
           + LDSMGV
Sbjct: 107 KQLDSMGV 114

[Close]

BLAST of MC03g1322 vs. NCBI nr
Match: XP_011649678.1 (transcription factor PRE5 [Cucumis sativus] >KGN63980.1 hypothetical protein Csa_014368 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 4.02e-18
Identity = 39/66 (59.09%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQL 60
          +   ++K LV +LQTLLP+L+    ++ ++SA EILKETCDYI+KLQREVDDLS+RL + 
Sbjct: 6  LGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQ 65

Query: 61 LDSMGV 66
          LDSMG+
Sbjct: 66 LDSMGI 71

[Close]

BLAST of MC03g1322 vs. NCBI nr
Match: TYJ98875.1 (transcription factor PRE5-like [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 3.21e-17
Identity = 38/66 (57.58%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQL 60
          +  +++K LV +L+TLLP+L+   D++ + S  EILKETCDYI+KLQ+EVDDLS+RL + 
Sbjct: 6  LGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQ 65

Query: 61 LDSMGV 66
          LDSMGV
Sbjct: 66 LDSMGV 71

[Close]

BLAST of MC03g1322 vs. NCBI nr
Match: XP_008440200.1 (PREDICTED: transcription factor PRE5-like [Cucumis melo] >KAA0036068.1 transcription factor PRE5-like [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 3.30e-17
Identity = 38/66 (57.58%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQL 60
          +  +++K LV +L+TLLP+L+   D++ + S  EILKETCDYI+KLQ+EVDDLS+RL + 
Sbjct: 6  LGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQ 65

Query: 61 LDSMGV 66
          LDSMGV
Sbjct: 66 LDSMGV 71

[Close]

BLAST of MC03g1322 vs. NCBI nr
Match: XP_021651758.1 (transcription factor PRE3-like [Hevea brasiliensis])

HSP 1 Score: 76.6 bits (187), Expect = 2.29e-16
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 5  DIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSM 64
          +I +L+++LQ LLP+L+Q   S V  SA++ILKETC YIRKLQREVDDLS+RL QLLDSM
Sbjct: 16 EINELIMKLQALLPQLNQRQSSRV--SASKILKETCSYIRKLQREVDDLSERLSQLLDSM 75

Query: 65 GV 66
           V
Sbjct: 76 DV 75

[Close]

BLAST of MC03g1322 vs. ExPASy TrEMBL
Match: A0A0A0LQ05 (DNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_1G032990 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.95e-18
Identity = 39/66 (59.09%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQL 60
          +   ++K LV +LQTLLP+L+    ++ ++SA EILKETCDYI+KLQREVDDLS+RL + 
Sbjct: 6  LGDDELKNLVSKLQTLLPQLNHKPHNSSEVSAGEILKETCDYIKKLQREVDDLSERLWKQ 65

Query: 61 LDSMGV 66
          LDSMG+
Sbjct: 66 LDSMGI 71

[Close]

BLAST of MC03g1322 vs. ExPASy TrEMBL
Match: A0A5D3BKI2 (Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00710 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.55e-17
Identity = 38/66 (57.58%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQL 60
          +  +++K LV +L+TLLP+L+   D++ + S  EILKETCDYI+KLQ+EVDDLS+RL + 
Sbjct: 6  LGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQ 65

Query: 61 LDSMGV 66
          LDSMGV
Sbjct: 66 LDSMGV 71

[Close]

BLAST of MC03g1322 vs. ExPASy TrEMBL
Match: A0A5A7SZP9 (Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00610 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.60e-17
Identity = 38/66 (57.58%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQL 60
          +  +++K LV +L+TLLP+L+   D++ + S  EILKETCDYI+KLQ+EVDDLS+RL + 
Sbjct: 6  LGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQ 65

Query: 61 LDSMGV 66
          LDSMGV
Sbjct: 66 LDSMGV 71

[Close]

BLAST of MC03g1322 vs. ExPASy TrEMBL
Match: A0A1S3B0J1 (transcription factor PRE5-like OS=Cucumis melo OX=3656 GN=LOC103484708 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.60e-17
Identity = 38/66 (57.58%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQL 60
          +  +++K LV +L+TLLP+L+   D++ + S  EILKETCDYI+KLQ+EVDDLS+RL + 
Sbjct: 6  LGDNELKNLVSKLRTLLPQLNHKPDNSSEASTGEILKETCDYIKKLQKEVDDLSERLWKQ 65

Query: 61 LDSMGV 66
          LDSMGV
Sbjct: 66 LDSMGV 71

[Close]

BLAST of MC03g1322 vs. ExPASy TrEMBL
Match: A0A067K4V8 (BHLH domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_11607 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.80e-15
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 4  SDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDS 63
          ++I  L+L+LQ LLP ++Q  DS V  SA++ILKETC YI KLQREVDDLS++L Q+LDS
Sbjct: 17 NEIIDLILKLQALLPHINQRQDSRV--SASKILKETCSYIGKLQREVDDLSEKLSQMLDS 76

Query: 64 MGV 66
          M +
Sbjct: 77 MDI 77

[Close]

BLAST of MC03g1322 vs. TAIR 10
Match: AT3G47710.1 (BANQUO 3 )

HSP 1 Score: 60.1 bits (144), Expect = 7.9e-10
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 1  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQL 60
          +    I  LVL+L  LLP L  N  S   +SA+ +L+ETC YIR L +EVDDLS+RL QL
Sbjct: 16 ITDEQINDLVLQLHRLLPELANNRRSG-KVSASRVLQETCSYIRNLSKEVDDLSERLSQL 75

Query: 61 LDS 64
          L+S
Sbjct: 76 LES 77

[Close]

BLAST of MC03g1322 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 60.1 bits (144), Expect = 7.9e-10
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 9  LVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQLLDSM 65
          LV +L+  LP +H+   S   +SA+++L+ETC+YIRKL REVD+LS RL QLLDS+
Sbjct: 23 LVSKLRQFLPEIHERRRSD-KVSASKVLQETCNYIRKLHREVDNLSDRLSQLLDSV 77

[Close]

BLAST of MC03g1322 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 58.5 bits (140), Expect = 2.3e-09
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 1  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQL 60
          ++   I  L+++LQ LLP L  +  S   +SAA +L++TC+YIR L REVDDLS+RL +L
Sbjct: 17 ISEDQINDLIIKLQQLLPELRDSRRSD-KVSAARVLQDTCNYIRNLHREVDDLSERLSEL 76

Query: 61 L 62
          L
Sbjct: 77 L 76

[Close]

BLAST of MC03g1322 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 8.7e-09
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 1  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQL 60
          ++   I  LV +LQ L+P L +     V  SA+++L+ETC+YIR L REVDDLS RL +L
Sbjct: 17 ISDDQISDLVSKLQHLIPELRRRRSDKV--SASKVLQETCNYIRNLHREVDDLSDRLSEL 76

Query: 61 LDS 64
          L S
Sbjct: 77 LAS 77

[Close]

BLAST of MC03g1322 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 )

HSP 1 Score: 56.6 bits (135), Expect = 8.7e-09
Identity = 28/64 (43.75%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 1  MASSDIKKLVLRLQTLLPRLHQNIDSTVDISAAEILKETCDYIRKLQREVDDLSQRLCQL 60
          ++   I  L+ +L+  +P + QN  S   +SA+++L+ETC+YIR L +E DDLS RL QL
Sbjct: 16 ISDDQITDLISKLRQSIPEIRQNRRSNT-VSASKVLQETCNYIRNLNKEADDLSDRLTQL 75

Query: 61 LDSM 65
          L+S+
Sbjct: 76 LESI 78

The following BLAST results are available for this feature:

BLAST of MC03g1322 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JCN9	1.1e-08	52.38	Transcription factor PRE4 OS=Arabidopsis thaliana OX=3702 GN=PRE4 PE=1 SV=1	[more]
Q9LJX1	1.1e-08	55.36	Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1	[more]
Q9CA64	3.2e-08	49.18	Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1	[more]
Q9LXG5	1.2e-07	43.75	Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1	[more]
Q8GW32	1.2e-07	49.21	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]

BLAST of MC03g1322 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895474.1	2.19e-18	63.24	transcription factor PRE5-like [Benincasa hispida]	[more]
XP_011649678.1	4.02e-18	59.09	transcription factor PRE5 [Cucumis sativus] >KGN63980.1 hypothetical protein Csa...	[more]
TYJ98875.1	3.21e-17	57.58	transcription factor PRE5-like [Cucumis melo var. makuwa]	[more]
XP_008440200.1	3.30e-17	57.58	PREDICTED: transcription factor PRE5-like [Cucumis melo] >KAA0036068.1 transcrip...	[more]
XP_021651758.1	2.29e-16	66.13	transcription factor PRE3-like [Hevea brasiliensis]	[more]

BLAST of MC03g1322 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ05	1.95e-18	59.09	DNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_1G032990 PE=4 SV=1	[more]
A0A5D3BKI2	1.55e-17	57.58	Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7SZP9	1.60e-17	57.58	Transcription factor PRE5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3B0J1	1.60e-17	57.58	transcription factor PRE5-like OS=Cucumis melo OX=3656 GN=LOC103484708 PE=4 SV=1	[more]
A0A067K4V8	7.80e-15	60.32	BHLH domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_11607 PE=4 S...	[more]

BLAST of MC03g1322 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47710.1	7.9e-10	52.38	BANQUO 3	[more]
AT3G28857.1	7.9e-10	55.36	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT1G74500.1	2.3e-09	49.18	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]
AT1G26945.1	8.7e-09	49.21	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G15160.1	8.7e-09	43.75	BANQUO 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 36..56
None	No IPR available	PANTHER	PTHR38546:SF3	DNA BINDING PROTEIN	coord: 3..65
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 6..47 e-value: 1.7E-4 score: 21.5
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 3..65 e-value: 1.1E-8 score: 37.2
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 5..60
IPR044172	Transcription factor ILI2-like	PANTHER	PTHR38546	DNA BINDING PROTEIN	coord: 3..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC03g1322.1	MC03g1322.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity