MC03g1305 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC03g1305
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Disulfide bond formation protein B 2, putative
Location	MC03: 18808528 .. 18808997 (+)
RNA-Seq Expression	MC03g1305
Synteny	MC03g1305

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCACCCACCCCTCTCCTTCGTCTACTCGTCATATTCCTTGGATTTTGCAGCCTTCTCTCTTCCAATGCTGTCCCAACTTCAAGTAAGCCTCACTAATCAGTCAATTCCCTCTCTGCCTCTTTCCTCTGTTTTTCATGGAACTAACTGCTTAGTTCTGATGTGAATCTGCAGGAAGTGTAAGCCTCATTCATGGAGCTGATCAATTTCTCCAAGTTTCAAGCAAAACCCACATGGTATATCACATTTCCCATCAACAAGTTTCCATCTTTCTTTCTTGCCAACTTAACATATTATCAGAACAGCAAAGATTGAACATCAATAATTGAACATGTGTTATGCAGGTGAGTGGTGGAGAGGAAGAAGTGAAGCATGGAAGGATGGTTGTGGCACTGAATGATTACCCAGGCTCCGGAGCCAACAATCGCCACACACCAAGACCACAATTTAGAGGCTGTGCTGATTGT

mRNA sequence

ATGGCAGCACCCACCCCTCTCCTTCGTCTACTCGTCATATTCCTTGGATTTTGCAGCCTTCTCTCTTCCAATGCTGTCCCAACTTCAAGAAGTGTAAGCCTCATTCATGGAGCTGATCAATTTCTCCAAGTTTCAAGCAAAACCCACATGGTGAGTGGTGGAGAGGAAGAAGTGAAGCATGGAAGGATGGTTGTGGCACTGAATGATTACCCAGGCTCCGGAGCCAACAATCGCCACACACCAAGACCACAATTTAGAGGCTGTGCTGATTGT

Coding sequence (CDS)

ATGGCAGCACCCACCCCTCTCCTTCGTCTACTCGTCATATTCCTTGGATTTTGCAGCCTTCTCTCTTCCAATGCTGTCCCAACTTCAAGAAGTGTAAGCCTCATTCATGGAGCTGATCAATTTCTCCAAGTTTCAAGCAAAACCCACATGGTGAGTGGTGGAGAGGAAGAAGTGAAGCATGGAAGGATGGTTGTGGCACTGAATGATTACCCAGGCTCCGGAGCCAACAATCGCCACACACCAAGACCACAATTTAGAGGCTGTGCTGATTGT

Protein sequence

MAAPTPLLRLLVIFLGFCSLLSSNAVPTSRSVSLIHGADQFLQVSSKTHMVSGGEEEVKHGRMVVALNDYPGSGANNRHTPRPQFRGCADC

Homology

[Close]

BLAST of MC03g1305 vs. NCBI nr
Match: XP_022137483.1 (uncharacterized protein LOC111008913 [Momordica charantia])

HSP 1 Score: 186 bits (472), Expect = 2.32e-59
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MAAPTPLLRLLVIFLGFCSLLSSNAVPTSRSVSLIHGADQFLQVSSKTHMVSGGEEEVKH 60
          MAAPTPLLRLLVIFLGFCSLLSSNAVPTSRSVSLIHGADQFLQVSSKTHMVSGGEEEVKH
Sbjct: 1  MAAPTPLLRLLVIFLGFCSLLSSNAVPTSRSVSLIHGADQFLQVSSKTHMVSGGEEEVKH 60

Query: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91
          GRMVVALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of MC03g1305 vs. NCBI nr
Match: XP_038895124.1 (uncharacterized protein LOC120083435 [Benincasa hispida])

HSP 1 Score: 147 bits (372), Expect = 4.20e-44
Identity = 74/91 (81.32%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 1  MAAPTPLLRLLVIFLGFCSLLSSNAVPTSRSVSLIHGADQFLQVSSKTHMVSGGEEEVKH 60
          MAA T  LRLLVIFLG CSLL SNAVPTSRSVSL+ G+  FL VSS THMV+  EEEV  
Sbjct: 1  MAAATHFLRLLVIFLGLCSLLCSNAVPTSRSVSLLRGSHPFLLVSSNTHMVTATEEEVSR 60

Query: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91
          GRMVVALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of MC03g1305 vs. NCBI nr
Match: XP_008442734.1 (PREDICTED: uncharacterized protein LOC103486492 [Cucumis melo] >TYJ98895.1 putative Disulfide bond formation protein B 2 [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (360), Expect = 2.84e-42
Identity = 72/91 (79.12%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 1  MAAPTPLLRLLVIFLGFCSLLSSNAVPTSRSVSLIHGADQFLQVSSKTHMVSGGEEEVKH 60
          MAA +  LRLLVIFLG  +LL SNAVPTSRSVSL+HG+  FL VSS THMV+  EEE  H
Sbjct: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFLHVSSDTHMVTKTEEEESH 60

Query: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91
          GRMVVALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of MC03g1305 vs. NCBI nr
Match: KAA0036087.1 (putative Disulfide bond formation protein B 2 [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (357), Expect = 8.15e-42
Identity = 71/91 (78.02%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 1  MAAPTPLLRLLVIFLGFCSLLSSNAVPTSRSVSLIHGADQFLQVSSKTHMVSGGEEEVKH 60
          MAA +  LRLLVIFLG  +LL SNAVPTSRSVSL+HG+  FL VS+ THMV+  EEE  H
Sbjct: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFLHVSTDTHMVTKTEEEESH 60

Query: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91
          GRMVVALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of MC03g1305 vs. NCBI nr
Match: KAG6607449.1 (hypothetical protein SDJN03_00791, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037107.1 hypothetical protein SDJN02_00728 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139 bits (351), Expect = 6.50e-41
Identity = 68/89 (76.40%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 3  APTPLLRLLVIFLGFCSLLSSNAVPTSRSVSLIHGADQFLQVSSKTHMVSGGEEEVKHGR 62
          A T  L LLV+FLG  +LL SNAVPTSRSVSL+HG+DQFL VSS THMVS  ++E  HGR
Sbjct: 2  ASTNFLCLLVVFLGVSNLLCSNAVPTSRSVSLLHGSDQFLHVSSDTHMVSATKKEESHGR 61

Query: 63 MVVALNDYPGSGANNRHTPRPQFRGCADC 91
          M V LNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 62 MAVELNDYPGSGANNRHTPRPQFRGCADC 90

[Close]

BLAST of MC03g1305 vs. ExPASy TrEMBL
Match: A0A6J1CAG5 (uncharacterized protein LOC111008913 OS=Momordica charantia OX=3673 GN=LOC111008913 PE=4 SV=1)

HSP 1 Score: 186 bits (472), Expect = 1.12e-59
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MAAPTPLLRLLVIFLGFCSLLSSNAVPTSRSVSLIHGADQFLQVSSKTHMVSGGEEEVKH 60
          MAAPTPLLRLLVIFLGFCSLLSSNAVPTSRSVSLIHGADQFLQVSSKTHMVSGGEEEVKH
Sbjct: 1  MAAPTPLLRLLVIFLGFCSLLSSNAVPTSRSVSLIHGADQFLQVSSKTHMVSGGEEEVKH 60

Query: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91
          GRMVVALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of MC03g1305 vs. ExPASy TrEMBL
Match: A0A5D3BKK4 (Putative Disulfide bond formation protein B 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00920 PE=4 SV=1)

HSP 1 Score: 143 bits (360), Expect = 1.38e-42
Identity = 72/91 (79.12%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 1  MAAPTPLLRLLVIFLGFCSLLSSNAVPTSRSVSLIHGADQFLQVSSKTHMVSGGEEEVKH 60
          MAA +  LRLLVIFLG  +LL SNAVPTSRSVSL+HG+  FL VSS THMV+  EEE  H
Sbjct: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFLHVSSDTHMVTKTEEEESH 60

Query: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91
          GRMVVALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of MC03g1305 vs. ExPASy TrEMBL
Match: A0A1S3B758 (uncharacterized protein LOC103486492 OS=Cucumis melo OX=3656 GN=LOC103486492 PE=4 SV=1)

HSP 1 Score: 143 bits (360), Expect = 1.38e-42
Identity = 72/91 (79.12%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 1  MAAPTPLLRLLVIFLGFCSLLSSNAVPTSRSVSLIHGADQFLQVSSKTHMVSGGEEEVKH 60
          MAA +  LRLLVIFLG  +LL SNAVPTSRSVSL+HG+  FL VSS THMV+  EEE  H
Sbjct: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFLHVSSDTHMVTKTEEEESH 60

Query: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91
          GRMVVALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of MC03g1305 vs. ExPASy TrEMBL
Match: A0A5A7T3C3 (Putative Disulfide bond formation protein B 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00820 PE=4 SV=1)

HSP 1 Score: 142 bits (357), Expect = 3.94e-42
Identity = 71/91 (78.02%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 1  MAAPTPLLRLLVIFLGFCSLLSSNAVPTSRSVSLIHGADQFLQVSSKTHMVSGGEEEVKH 60
          MAA +  LRLLVIFLG  +LL SNAVPTSRSVSL+HG+  FL VS+ THMV+  EEE  H
Sbjct: 1  MAAASHFLRLLVIFLGLYNLLCSNAVPTSRSVSLLHGSLPFLHVSTDTHMVTKTEEEESH 60

Query: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91
          GRMVVALNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 61 GRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of MC03g1305 vs. ExPASy TrEMBL
Match: A0A6J1GC04 (uncharacterized protein LOC111452592 OS=Cucurbita moschata OX=3662 GN=LOC111452592 PE=4 SV=1)

HSP 1 Score: 139 bits (351), Expect = 3.15e-41
Identity = 68/89 (76.40%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 3  APTPLLRLLVIFLGFCSLLSSNAVPTSRSVSLIHGADQFLQVSSKTHMVSGGEEEVKHGR 62
          A T  L LLV+FLG  +LL SNAVPTSRSVSL+HG+DQFL VSS THMVS  ++E  HGR
Sbjct: 2  ATTNFLCLLVVFLGVSNLLCSNAVPTSRSVSLLHGSDQFLHVSSDTHMVSATKKEENHGR 61

Query: 63 MVVALNDYPGSGANNRHTPRPQFRGCADC 91
          M V LNDYPGSGANNRHTPRPQFRGCADC
Sbjct: 62 MAVELNDYPGSGANNRHTPRPQFRGCADC 90

[Close]

BLAST of MC03g1305 vs. TAIR 10
Match: AT3G47510.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 4.7e-05
Identity = 38/86 (44.19%), Postives = 45/86 (52.33%), Query Frame = 0


Query: 7  LLRLLVIFLGFCSLLSSNAVPTSRSVSLIHGADQFLQVSSKTHMVSGGEEEVKHGRMVVA 66
          L+ LLVIF    S +       SR  SL+    + ++    T M    E E    RMV+ 
Sbjct: 6  LIHLLVIFFLALSHIFFFPSHASRLGSLME-KPKIVRPQQDTLMDVKKEVE---ERMVME 65

Query: 67 LNDYPGSGANNRHTPRPQFRGC-ADC 92
          LNDYPGSGANNRH PR   RGC  DC
Sbjct: 66 LNDYPGSGANNRHLPRQ--RGCVVDC 85

The following BLAST results are available for this feature:

BLAST of MC03g1305 vs.


Match Name	E-value	Identity	Description

BLAST of MC03g1305 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137483.1	2.32e-59	100.00	uncharacterized protein LOC111008913 [Momordica charantia]	[more]
XP_038895124.1	4.20e-44	81.32	uncharacterized protein LOC120083435 [Benincasa hispida]	[more]
XP_008442734.1	2.84e-42	79.12	PREDICTED: uncharacterized protein LOC103486492 [Cucumis melo] >TYJ98895.1 putat...	[more]
KAA0036087.1	8.15e-42	78.02	putative Disulfide bond formation protein B 2 [Cucumis melo var. makuwa]	[more]
KAG6607449.1	6.50e-41	76.40	hypothetical protein SDJN03_00791, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MC03g1305 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CAG5	1.12e-59	100.00	uncharacterized protein LOC111008913 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A5D3BKK4	1.38e-42	79.12	Putative Disulfide bond formation protein B 2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3B758	1.38e-42	79.12	uncharacterized protein LOC103486492 OS=Cucumis melo OX=3656 GN=LOC103486492 PE=...	[more]
A0A5A7T3C3	3.94e-42	78.02	Putative Disulfide bond formation protein B 2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A6J1GC04	3.15e-41	76.40	uncharacterized protein LOC111452592 OS=Cucurbita moschata OX=3662 GN=LOC1114525...	[more]

BLAST of MC03g1305 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47510.1	4.7e-05	44.19	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..91
None	No IPR available	PANTHER	PTHR33474	TRANSMEMBRANE PROTEIN	coord: 4..86
None	No IPR available	PANTHER	PTHR33474:SF2	TRANSMEMBRANE PROTEIN	coord: 4..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC03g1305.1	MC03g1305.1	mRNA