MC03g1256 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC03g1256
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	transcription factor TCP24
Location	MC03: 18494573 .. 18495121 (-)
RNA-Seq Expression	MC03g1256
Synteny	MC03g1256

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAGGGGCAACCCAAGAATTTTTAGAGTTTCAACTTTGTTTGGAGGGAAAGACAGGCACAGCAAAGTTTTCACAATAAAGGGGTTAAGAGACAGAAGAATTAGGCTTTCAACTCCCACTGCAATTCAACTTTATGATCTACAAAACAAACTTGGCCTCGGCCAACCCAGCAAAGTCATAGATTGGCTTATTGATGTCACAAGATTTGATATTGATAAGCTCCCACCTCTCCAAATTCCAAAAGATTTTGACCCAAATGCCTCTGTTCTTTATCAATCTTCAATGCTTCTTCCTCAGGTTTGCCATTTTGATGTTGCAGTGAAAGCCAGAAATGGAGGAACTGAGAGACTTTTGGCACAAAAGTTGTCTCCTTTGGTCAATCATGCTTCTTTATGTTCTCTTCAAAGCAATGCCATGGATGAAAGCTTTTGCCATTTTGAGCCTTCAAGCTTTCCATTCCCATCAATGGAGGCCAACCCAGACTCGTTTTCCTCCTCTGCTTCTGCTCAGTTGCTGTTCTGTCCATTGACAACGCCATCCGAAGTCTCT

mRNA sequence

CTAAGGGGCAACCCAAGAATTTTTAGAGTTTCAACTTTGTTTGGAGGGAAAGACAGGCACAGCAAAGTTTTCACAATAAAGGGGTTAAGAGACAGAAGAATTAGGCTTTCAACTCCCACTGCAATTCAACTTTATGATCTACAAAACAAACTTGGCCTCGGCCAACCCAGCAAAGTCATAGATTGGCTTATTGATGTCACAAGATTTGATATTGATAAGCTCCCACCTCTCCAAATTCCAAAAGATTTTGACCCAAATGCCTCTGTTCTTTATCAATCTTCAATGCTTCTTCCTCAGGTTTGCCATTTTGATGTTGCAGTGAAAGCCAGAAATGGAGGAACTGAGAGACTTTTGGCACAAAAGTTGTCTCCTTTGGTCAATCATGCTTCTTTATGTTCTCTTCAAAGCAATGCCATGGATGAAAGCTTTTGCCATTTTGAGCCTTCAAGCTTTCCATTCCCATCAATGGAGGCCAACCCAGACTCGTTTTCCTCCTCTGCTTCTGCTCAGTTGCTGTTCTGTCCATTGACAACGCCATCCGAAGTCTCT

Coding sequence (CDS)

CTAAGGGGCAACCCAAGAATTTTTAGAGTTTCAACTTTGTTTGGAGGGAAAGACAGGCACAGCAAAGTTTTCACAATAAAGGGGTTAAGAGACAGAAGAATTAGGCTTTCAACTCCCACTGCAATTCAACTTTATGATCTACAAAACAAACTTGGCCTCGGCCAACCCAGCAAAGTCATAGATTGGCTTATTGATGTCACAAGATTTGATATTGATAAGCTCCCACCTCTCCAAATTCCAAAAGATTTTGACCCAAATGCCTCTGTTCTTTATCAATCTTCAATGCTTCTTCCTCAGGTTTGCCATTTTGATGTTGCAGTGAAAGCCAGAAATGGAGGAACTGAGAGACTTTTGGCACAAAAGTTGTCTCCTTTGGTCAATCATGCTTCTTTATGTTCTCTTCAAAGCAATGCCATGGATGAAAGCTTTTGCCATTTTGAGCCTTCAAGCTTTCCATTCCCATCAATGGAGGCCAACCCAGACTCGTTTTCCTCCTCTGCTTCTGCTCAGTTGCTGTTCTGTCCATTGACAACGCCATCCGAAGTCTCT

Protein sequence

LRGNPRIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVIDWLIDVTRFDIDKLPPLQIPKDFDPNASVLYQSSMLLPQVCHFDVAVKARNGGTERLLAQKLSPLVNHASLCSLQSNAMDESFCHFEPSSFPFPSMEANPDSFSSSASAQLLFCPLTTPSEVS

Homology

[Close]

BLAST of MC03g1256 vs. ExPASy Swiss-Prot
Match: Q9FME3 (Transcription factor TCP5 OS=Arabidopsis thaliana OX=3702 GN=TCP5 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-29
Identity = 60/81 (74.07%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 4   NPRIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVIDWL 63
           NPRI RVS  FGGKDRHSKV T++GLRDRRIRLS PTAIQLYDLQ++LGL QPSKVIDWL
Sbjct: 51  NPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWL 110

Query: 64  IDVTRFDIDKLPPLQIPKDFD 85
           ++  + D+DKLPPLQ P  F+
Sbjct: 111 LEAAKDDVDKLPPLQFPHGFN 131

[Close]

BLAST of MC03g1256 vs. ExPASy Swiss-Prot
Match: Q9LEZ9 (Transcription factor TCP17 OS=Arabidopsis thaliana OX=3702 GN=TCP17 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.7e-28
Identity = 62/93 (66.67%), Postives = 73/93 (78.49%), Query Frame = 0


Query: 4   NPRIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVIDWL 63
           NPRI RVS  FGGKDRHSKV T++GLRDRRIRLS  TAIQ+YDLQ +LGL QPSKVIDWL
Sbjct: 21  NPRIVRVSRAFGGKDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWL 80

Query: 64  IDVTRFDIDKLPPLQIPKDF---DPNASVLYQS 94
           ++V + D+D LPPLQ P  F   +PN + L +S
Sbjct: 81  LEVAKNDVDLLPPLQFPPGFHQLNPNLTGLGES 113

[Close]

BLAST of MC03g1256 vs. ExPASy Swiss-Prot
Match: Q9S7W5 (Transcription factor TCP13 OS=Arabidopsis thaliana OX=3702 GN=TCP13 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.3e-26
Identity = 55/81 (67.90%), Postives = 68/81 (83.95%), Query Frame = 0


Query: 4   NPRIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVIDWL 63
           +PRI RVS  FGGKDRHSKV T++GLRDRR+RLS PTAIQLYDLQ +LG+ QPSK +DWL
Sbjct: 62  DPRIVRVSRAFGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWL 121

Query: 64  IDVTRFDIDKLPPLQI-PKDF 84
           +D  + +ID+LPPL I P++F
Sbjct: 122 LDAAKEEIDELPPLPISPENF 142

[Close]

BLAST of MC03g1256 vs. ExPASy Swiss-Prot
Match: Q9C758 (Transcription factor TCP24 OS=Arabidopsis thaliana OX=3702 GN=TCP24 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.4e-21
Identity = 65/146 (44.52%), Postives = 80/146 (54.79%), Query Frame = 0


Query: 6   RIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVIDWLID 65
           RI RVS   GGKDRHSKV T KGLRDRRIRLS  TAIQ YDLQ++LG  QPSK ++WLI+
Sbjct: 40  RIIRVSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLIN 99

Query: 66  VTRFDIDKLPPLQIPKD-FDPN--------ASVLYQSSMLLPQVCHFDVAVKARNGGTER 125
                I  LP L    D  D N        +S   +SS+L   +   ++  KAR    ER
Sbjct: 100 AASDSITDLPLLNTNFDHLDQNQNQTKSACSSGTSESSLL--SLSRTEIRGKARERARER 159

Query: 126 LLAQKLSPLVN-HASLCSLQSNAMDE 142
               +   L N H+S   L +   D+
Sbjct: 160 TAKDRDKDLQNAHSSFTQLLTGGFDQ 183

[Close]

BLAST of MC03g1256 vs. ExPASy Swiss-Prot
Match: A2XMN1 (Transcription factor PCF6 OS=Oryza sativa subsp. indica OX=39946 GN=PCF6 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.9e-18
Identity = 46/72 (63.89%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 6   RIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVIDWLID 65
           RI+RV    GGKDRHSKV+T KG+RDRR+RLS  TAIQ YDLQ++LG  QPSK I+WLI+
Sbjct: 43  RIYRVRAT-GGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLIN 102

Query: 66  VTRFDIDKLPPL 78
                ID LP L
Sbjct: 103 AASPAIDTLPSL 113

[Close]

BLAST of MC03g1256 vs. NCBI nr
Match: XP_022137286.1 (transcription factor TCP24 [Momordica charantia])

HSP 1 Score: 367 bits (942), Expect = 1.28e-127
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   LRGNPRIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVI 60
           LRGNPRIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVI
Sbjct: 18  LRGNPRIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVI 77

Query: 61  DWLIDVTRFDIDKLPPLQIPKDFDPNASVLYQSSMLLPQVCHFDVAVKARNGGTERLLAQ 120
           DWLIDVTRFDIDKLPPLQIPKDFDPNASVLYQSSMLLPQVCHFDVAVKARNGGTERLLAQ
Sbjct: 78  DWLIDVTRFDIDKLPPLQIPKDFDPNASVLYQSSMLLPQVCHFDVAVKARNGGTERLLAQ 137

Query: 121 KLSPLVNHASLCSLQSNAMDESFCHFEPSSFPFPSMEANPDSFSSSASAQLLFCPLTTPS 180
           KLSPLVNHASLCSLQSNAMDESFCHFEPSSFPFPSMEANPDSFSSSASAQLLFCPLTTPS
Sbjct: 138 KLSPLVNHASLCSLQSNAMDESFCHFEPSSFPFPSMEANPDSFSSSASAQLLFCPLTTPS 197

Query: 181 EVS 183
           EVS
Sbjct: 198 EVS 200

[Close]

BLAST of MC03g1256 vs. NCBI nr
Match: XP_038895251.1 (transcription factor PCF6 [Benincasa hispida])

HSP 1 Score: 239 bits (610), Expect = 4.19e-77
Identity = 129/188 (68.62%), Postives = 146/188 (77.66%), Query Frame = 0


Query: 1   LRGNPRIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVI 60
           LRGNPRI RVS+LFGGKDRHSKV T+KGLRDRRIRLS PTAIQLYDLQNKLGL QPSKVI
Sbjct: 26  LRGNPRILRVSSLFGGKDRHSKVCTVKGLRDRRIRLSVPTAIQLYDLQNKLGLSQPSKVI 85

Query: 61  DWLIDVTRFDIDKLPPLQIPKDFDPNASVLYQSSMLLPQVCHFDVA---VKARNGGTE-R 120
           DWLIDVTRF+IDKLPPL  PKDFDPNAS+L+ SS+ LPQ+ HFD+A   V A+N  T+ R
Sbjct: 86  DWLIDVTRFEIDKLPPLHFPKDFDPNASILHHSSLFLPQIPHFDIADAAVTAKNEETDQR 145

Query: 121 LLAQKLSPLVNHASLCSLQSNAMDESFCHFEPSSFPFPSME-ANPDSFSSSASAQLLFCP 180
           LL  KLS L    S   +Q+NA+ E+ CHF+P SFPFP M+  +P SFS        FCP
Sbjct: 146 LLLHKLSSL----SALQVQTNAIKENCCHFQPPSFPFPLMDQTSPASFS--------FCP 201

Query: 181 LTTPSEVS 183
           LT PSEVS
Sbjct: 206 LTMPSEVS 201

[Close]

BLAST of MC03g1256 vs. NCBI nr
Match: KAG6584403.1 (Transcription factor TCP5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 238 bits (608), Expect = 1.38e-76
Identity = 132/186 (70.97%), Postives = 143/186 (76.88%), Query Frame = 0


Query: 1   LRGNPRIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVI 60
           LRGNPRIFRVS LFGGKDRHSKV T+KGLRDRRIRLS PTAIQLYDLQN+LGL QPSKVI
Sbjct: 39  LRGNPRIFRVSPLFGGKDRHSKVCTMKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVI 98

Query: 61  DWLIDVTRFDIDKLPPLQIPKDFDPNASVLYQSSMLLPQVCHFDVAVKARNGGTERLLAQ 120
           DWLIDVTRFDIDKLPPL  PKDFDPNAS L+   +        D A KA++  T  LL Q
Sbjct: 99  DWLIDVTRFDIDKLPPLHFPKDFDPNASFLHHLDIS-------DAAAKAKHEETGMLLLQ 158

Query: 121 KLSPLVNHASLCSLQ--SNAMDESFCHFEPSSFPFPSME-ANPDSFSSSASAQLLFCPLT 180
           KLSP  NHAS  +LQ  +NAM E+ CHF+P SFPFP M+ ANP SFSS  S QLLF PLT
Sbjct: 159 KLSPSPNHASFSALQLRTNAMTENCCHFDPPSFPFPLMDQANPASFSS-PSEQLLFRPLT 216

Query: 181 TPSEVS 183
            P EVS
Sbjct: 219 MPPEVS 216

[Close]

BLAST of MC03g1256 vs. NCBI nr
Match: XP_023519980.1 (transcription factor TCP13-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 237 bits (604), Expect = 5.61e-76
Identity = 132/189 (69.84%), Postives = 144/189 (76.19%), Query Frame = 0


Query: 1   LRGNPRIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVI 60
           LRGNPRIFRVS LFGGKDRHSKV T+KGLRDRRIRLS PTAIQLYDLQN+LGL QPSKVI
Sbjct: 39  LRGNPRIFRVSPLFGGKDRHSKVCTMKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVI 98

Query: 61  DWLIDVTRFDIDKLPPLQIPKDFDPNASVLYQSSMLLPQVCHFDVA---VKARNGGTERL 120
           DWLIDVTRFDIDKLPPL  PKDFDPNAS L+          H D+A    KA++  T  L
Sbjct: 99  DWLIDVTRFDIDKLPPLHFPKDFDPNASFLH----------HLDIADATAKAKHEETGML 158

Query: 121 LAQKLSPLVNHASLCSLQ--SNAMDESFCHFEPSSFPFPSME-ANPDSFSSSASAQLLFC 180
           L QKLSP  NHAS  +LQ  +NAM E+ CHF+P SFPFP M+ ANP SFSS  S QLLF 
Sbjct: 159 LLQKLSPSPNHASFSALQLQTNAMTENCCHFDPPSFPFPLMDQANPASFSS-PSEQLLFR 216

Query: 181 PLTTPSEVS 183
           P+T P EVS
Sbjct: 219 PMTVPPEVS 216

[Close]

BLAST of MC03g1256 vs. NCBI nr
Match: XP_023001048.1 (transcription factor TCP13-like [Cucurbita maxima])

HSP 1 Score: 236 bits (602), Expect = 1.13e-75
Identity = 132/189 (69.84%), Postives = 144/189 (76.19%), Query Frame = 0


Query: 1   LRGNPRIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVI 60
           LRGNPRIFRVS LFGGKDRHSKV T+KGLRDRRIRLS PTAIQLYDLQN+LGL QPSKVI
Sbjct: 39  LRGNPRIFRVSPLFGGKDRHSKVCTMKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVI 98

Query: 61  DWLIDVTRFDIDKLPPLQIPKDFDPNASVLYQSSMLLPQVCHFDVA---VKARNGGTERL 120
           DWL+DVTRFDIDKLPPL  PKDFDPNAS L+          HFD+A    KA++  T  L
Sbjct: 99  DWLMDVTRFDIDKLPPLHFPKDFDPNASFLH----------HFDIADAAAKAKHEETGML 158

Query: 121 LAQKLSPLVNHASLCSLQ--SNAMDESFCHFEPSSFPFPSME-ANPDSFSSSASAQLLFC 180
           L QK SP  NHAS  +LQ  +NAM E+ CHF+P SFPFP M+ ANP SFSS  S QLLF 
Sbjct: 159 LLQKSSPSPNHASFSALQLQTNAMTENCCHFDPPSFPFPLMDQANPASFSS-PSEQLLFR 216

Query: 181 PLTTPSEVS 183
           PLT P EVS
Sbjct: 219 PLTMPPEVS 216

[Close]

BLAST of MC03g1256 vs. ExPASy TrEMBL
Match: A0A6J1C656 (transcription factor TCP24 OS=Momordica charantia OX=3673 GN=LOC111008784 PE=4 SV=1)

HSP 1 Score: 367 bits (942), Expect = 6.21e-128
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   LRGNPRIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVI 60
           LRGNPRIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVI
Sbjct: 18  LRGNPRIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVI 77

Query: 61  DWLIDVTRFDIDKLPPLQIPKDFDPNASVLYQSSMLLPQVCHFDVAVKARNGGTERLLAQ 120
           DWLIDVTRFDIDKLPPLQIPKDFDPNASVLYQSSMLLPQVCHFDVAVKARNGGTERLLAQ
Sbjct: 78  DWLIDVTRFDIDKLPPLQIPKDFDPNASVLYQSSMLLPQVCHFDVAVKARNGGTERLLAQ 137

Query: 121 KLSPLVNHASLCSLQSNAMDESFCHFEPSSFPFPSMEANPDSFSSSASAQLLFCPLTTPS 180
           KLSPLVNHASLCSLQSNAMDESFCHFEPSSFPFPSMEANPDSFSSSASAQLLFCPLTTPS
Sbjct: 138 KLSPLVNHASLCSLQSNAMDESFCHFEPSSFPFPSMEANPDSFSSSASAQLLFCPLTTPS 197

Query: 181 EVS 183
           EVS
Sbjct: 198 EVS 200

[Close]

BLAST of MC03g1256 vs. ExPASy TrEMBL
Match: A0A6J1KPD9 (transcription factor TCP13-like OS=Cucurbita maxima OX=3661 GN=LOC111495302 PE=4 SV=1)

HSP 1 Score: 236 bits (602), Expect = 5.47e-76
Identity = 132/189 (69.84%), Postives = 144/189 (76.19%), Query Frame = 0


Query: 1   LRGNPRIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVI 60
           LRGNPRIFRVS LFGGKDRHSKV T+KGLRDRRIRLS PTAIQLYDLQN+LGL QPSKVI
Sbjct: 39  LRGNPRIFRVSPLFGGKDRHSKVCTMKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVI 98

Query: 61  DWLIDVTRFDIDKLPPLQIPKDFDPNASVLYQSSMLLPQVCHFDVA---VKARNGGTERL 120
           DWL+DVTRFDIDKLPPL  PKDFDPNAS L+          HFD+A    KA++  T  L
Sbjct: 99  DWLMDVTRFDIDKLPPLHFPKDFDPNASFLH----------HFDIADAAAKAKHEETGML 158

Query: 121 LAQKLSPLVNHASLCSLQ--SNAMDESFCHFEPSSFPFPSME-ANPDSFSSSASAQLLFC 180
           L QK SP  NHAS  +LQ  +NAM E+ CHF+P SFPFP M+ ANP SFSS  S QLLF 
Sbjct: 159 LLQKSSPSPNHASFSALQLQTNAMTENCCHFDPPSFPFPLMDQANPASFSS-PSEQLLFR 216

Query: 181 PLTTPSEVS 183
           PLT P EVS
Sbjct: 219 PLTMPPEVS 216

[Close]

BLAST of MC03g1256 vs. ExPASy TrEMBL
Match: A0A6J1E7C6 (transcription factor PCF8-like OS=Cucurbita moschata OX=3662 GN=LOC111431389 PE=4 SV=1)

HSP 1 Score: 232 bits (591), Expect = 2.48e-74
Identity = 130/186 (69.89%), Postives = 141/186 (75.81%), Query Frame = 0


Query: 1   LRGNPRIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVI 60
           LRGNPRIFRVS LFGGKDRHSKV T+KGLRDRRIRLS PTAIQLYDLQN+LGL QPSKVI
Sbjct: 39  LRGNPRIFRVSPLFGGKDRHSKVCTMKGLRDRRIRLSAPTAIQLYDLQNRLGLSQPSKVI 98

Query: 61  DWLIDVTRFDIDKLPPLQIPKDFDPNASVLYQSSMLLPQVCHFDVAVKARNGGTERLLAQ 120
           DWLIDVTR DIDKLPPL  PKDFDPNAS L+            D A KA++  T  LL Q
Sbjct: 99  DWLIDVTRVDIDKLPPLHFPKDFDPNASFLHLDIA--------DAAAKAKHEETGMLLLQ 158

Query: 121 KLSPLVNHASLCSLQ--SNAMDESFCHFEPSSFPFPSME-ANPDSFSSSASAQLLFCPLT 180
           KLSP  N+AS  +LQ  +NAM E+ CHF+P SFPFP M+ ANP SFSS  S QLLF PLT
Sbjct: 159 KLSPSPNNASFSALQLQTNAMTENCCHFDPPSFPFPLMDQANPASFSS-PSEQLLFRPLT 215

Query: 181 TPSEVS 183
            P EVS
Sbjct: 219 MPPEVS 215

[Close]

BLAST of MC03g1256 vs. ExPASy TrEMBL
Match: A0A0A0LTI3 (TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039270 PE=4 SV=1)

HSP 1 Score: 188 bits (477), Expect = 1.23e-57
Identity = 100/157 (63.69%), Postives = 112/157 (71.34%), Query Frame = 0


Query: 1   LRGNPRIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVI 60
           LRGNPRIFRVS  FGGKDRHSKV TIKGLRDRRIRLS PTAIQLYDLQNKLGL QPSKVI
Sbjct: 34  LRGNPRIFRVSPFFGGKDRHSKVCTIKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVI 93

Query: 61  DWLIDVTRFDIDKLPPLQIPKDFDPNASVLYQSSMLLPQVCHFDVAVKARNGGTERLLAQ 120
           DWLIDVTRF+IDKLPPL  PKDFDPNAS+L+ S +        D A KA+N  T+  L  
Sbjct: 94  DWLIDVTRFEIDKLPPLPFPKDFDPNASILHHSDI-------GDAAFKAKNEETDHTLL- 153

Query: 121 KLSPLVNHASLCSLQSNAMDESFCHFEPSSFPFPSME 157
                        +Q+N ++    HFEP +FPFP M+
Sbjct: 154 -------------VQTNDINGVCSHFEPPTFPFPFMD 169

[Close]

BLAST of MC03g1256 vs. ExPASy TrEMBL
Match: A0A5D3BIQ9 (Transcription factor TCP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001450 PE=4 SV=1)

HSP 1 Score: 186 bits (472), Expect = 7.28e-57
Identity = 104/166 (62.65%), Postives = 117/166 (70.48%), Query Frame = 0


Query: 1   LRGNPRIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVI 60
           LRGNPRIFRVS  FGGKDRHSKV TIKGLRDRRIRLS PTAIQLYDLQNKLGL QPSKVI
Sbjct: 34  LRGNPRIFRVSPFFGGKDRHSKVCTIKGLRDRRIRLSIPTAIQLYDLQNKLGLSQPSKVI 93

Query: 61  DWLIDVTRFDIDKLPPLQIPKDFDPNASVLYQSSMLLPQVCHFDVAV-KARNGGTERLLA 120
           DWLIDVTRF+IDKLPPL  PKDFDPNAS+L+ S +        D A+ KA+N  T++ L 
Sbjct: 94  DWLIDVTRFEIDKLPPLHFPKDFDPNASILHHSDI------GGDAALMKAKNEETDQTLL 153

Query: 121 QKLSPLVNHASLCSLQSNAMDESFCHFEPSSFPFPSM-EANPDSFS 164
                         +Q+N ++    HFEP SFPFP M + N   FS
Sbjct: 154 --------------VQTNDINGDSSHFEPPSFPFPFMYQTNSSPFS 179

[Close]

BLAST of MC03g1256 vs. TAIR 10
Match: AT5G60970.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 )

HSP 1 Score: 131.3 bits (329), Expect = 7.7e-31
Identity = 60/81 (74.07%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 4   NPRIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVIDWL 63
           NPRI RVS  FGGKDRHSKV T++GLRDRRIRLS PTAIQLYDLQ++LGL QPSKVIDWL
Sbjct: 51  NPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWL 110

Query: 64  IDVTRFDIDKLPPLQIPKDFD 85
           ++  + D+DKLPPLQ P  F+
Sbjct: 111 LEAAKDDVDKLPPLQFPHGFN 131

[Close]

BLAST of MC03g1256 vs. TAIR 10
Match: AT5G08070.1 (TCP domain protein 17 )

HSP 1 Score: 126.7 bits (317), Expect = 1.9e-29
Identity = 62/93 (66.67%), Postives = 73/93 (78.49%), Query Frame = 0


Query: 4   NPRIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVIDWL 63
           NPRI RVS  FGGKDRHSKV T++GLRDRRIRLS  TAIQ+YDLQ +LGL QPSKVIDWL
Sbjct: 21  NPRIVRVSRAFGGKDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWL 80

Query: 64  IDVTRFDIDKLPPLQIPKDF---DPNASVLYQS 94
           ++V + D+D LPPLQ P  F   +PN + L +S
Sbjct: 81  LEVAKNDVDLLPPLQFPPGFHQLNPNLTGLGES 113

[Close]

BLAST of MC03g1256 vs. TAIR 10
Match: AT3G02150.1 (plastid transcription factor 1 )

HSP 1 Score: 119.4 bits (298), Expect = 3.0e-27
Identity = 55/81 (67.90%), Postives = 68/81 (83.95%), Query Frame = 0


Query: 4   NPRIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVIDWL 63
           +PRI RVS  FGGKDRHSKV T++GLRDRR+RLS PTAIQLYDLQ +LG+ QPSK +DWL
Sbjct: 62  DPRIVRVSRAFGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWL 121

Query: 64  IDVTRFDIDKLPPLQI-PKDF 84
           +D  + +ID+LPPL I P++F
Sbjct: 122 LDAAKEEIDELPPLPISPENF 142

[Close]

BLAST of MC03g1256 vs. TAIR 10
Match: AT3G02150.2 (plastid transcription factor 1 )

HSP 1 Score: 119.4 bits (298), Expect = 3.0e-27
Identity = 55/81 (67.90%), Postives = 68/81 (83.95%), Query Frame = 0


Query: 4   NPRIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVIDWL 63
           +PRI RVS  FGGKDRHSKV T++GLRDRR+RLS PTAIQLYDLQ +LG+ QPSK +DWL
Sbjct: 62  DPRIVRVSRAFGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWL 121

Query: 64  IDVTRFDIDKLPPLQI-PKDF 84
           +D  + +ID+LPPL I P++F
Sbjct: 122 LDAAKEEIDELPPLPISPENF 142

[Close]

BLAST of MC03g1256 vs. TAIR 10
Match: AT1G30210.1 (TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 )

HSP 1 Score: 102.4 bits (254), Expect = 3.8e-22
Identity = 65/146 (44.52%), Postives = 80/146 (54.79%), Query Frame = 0


Query: 6   RIFRVSTLFGGKDRHSKVFTIKGLRDRRIRLSTPTAIQLYDLQNKLGLGQPSKVIDWLID 65
           RI RVS   GGKDRHSKV T KGLRDRRIRLS  TAIQ YDLQ++LG  QPSK ++WLI+
Sbjct: 40  RIIRVSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLIN 99

Query: 66  VTRFDIDKLPPLQIPKD-FDPN--------ASVLYQSSMLLPQVCHFDVAVKARNGGTER 125
                I  LP L    D  D N        +S   +SS+L   +   ++  KAR    ER
Sbjct: 100 AASDSITDLPLLNTNFDHLDQNQNQTKSACSSGTSESSLL--SLSRTEIRGKARERARER 159

Query: 126 LLAQKLSPLVN-HASLCSLQSNAMDE 142
               +   L N H+S   L +   D+
Sbjct: 160 TAKDRDKDLQNAHSSFTQLLTGGFDQ 183

The following BLAST results are available for this feature:

BLAST of MC03g1256 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FME3	1.1e-29	74.07	Transcription factor TCP5 OS=Arabidopsis thaliana OX=3702 GN=TCP5 PE=1 SV=1	[more]
Q9LEZ9	2.7e-28	66.67	Transcription factor TCP17 OS=Arabidopsis thaliana OX=3702 GN=TCP17 PE=1 SV=1	[more]
Q9S7W5	4.3e-26	67.90	Transcription factor TCP13 OS=Arabidopsis thaliana OX=3702 GN=TCP13 PE=1 SV=1	[more]
Q9C758	5.4e-21	44.52	Transcription factor TCP24 OS=Arabidopsis thaliana OX=3702 GN=TCP24 PE=1 SV=1	[more]
A2XMN1	1.9e-18	63.89	Transcription factor PCF6 OS=Oryza sativa subsp. indica OX=39946 GN=PCF6 PE=4 SV...	[more]

BLAST of MC03g1256 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137286.1	1.28e-127	100.00	transcription factor TCP24 [Momordica charantia]	[more]
XP_038895251.1	4.19e-77	68.62	transcription factor PCF6 [Benincasa hispida]	[more]
KAG6584403.1	1.38e-76	70.97	Transcription factor TCP5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023519980.1	5.61e-76	69.84	transcription factor TCP13-like [Cucurbita pepo subsp. pepo]	[more]
XP_023001048.1	1.13e-75	69.84	transcription factor TCP13-like [Cucurbita maxima]	[more]

BLAST of MC03g1256 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C656	6.21e-128	100.00	transcription factor TCP24 OS=Momordica charantia OX=3673 GN=LOC111008784 PE=4 S...	[more]
A0A6J1KPD9	5.47e-76	69.84	transcription factor TCP13-like OS=Cucurbita maxima OX=3661 GN=LOC111495302 PE=4...	[more]
A0A6J1E7C6	2.48e-74	69.89	transcription factor PCF8-like OS=Cucurbita moschata OX=3662 GN=LOC111431389 PE=...	[more]
A0A0A0LTI3	1.23e-57	63.69	TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039270 PE=4 SV...	[more]
A0A5D3BIQ9	7.28e-57	62.65	Transcription factor TCP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of MC03g1256 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60970.1	7.7e-31	74.07	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5	[more]
AT5G08070.1	1.9e-29	66.67	TCP domain protein 17	[more]
AT3G02150.1	3.0e-27	67.90	plastid transcription factor 1	[more]
AT3G02150.2	3.0e-27	67.90	plastid transcription factor 1	[more]
AT1G30210.1	3.8e-22	44.52	TEOSINTE BRANCHED 1, cycloidea, and PCF family 24	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017887	Transcription factor TCP subgroup	PFAM	PF03634	TCP	coord: 16..94 e-value: 1.7E-22 score: 80.6
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 16..74 score: 23.865572
IPR005333	Transcription factor, TCP	PANTHER	PTHR31072	TRANSCRIPTION FACTOR TCP4-RELATED	coord: 4..84
None	No IPR available	PANTHER	PTHR31072:SF119	TRANSCRIPTION FACTOR TCP17	coord: 4..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC03g1256.1	MC03g1256.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding