MC03g1241 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC03g1241
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionDof zinc finger Protein
LocationMC03: 18392143 .. 18392388 (+)
RNA-Seq ExpressionMC03g1241
SyntenyMC03g1241
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCCAGACATGGACGCCGCGCAGAAGCAGAACATCGGATCAATCGGTGGAGATGACCGGAGAGTGAAGTGCCCCTGCCCTAGGTGCCATTCTCTCGACACCAAATTCTGCTATTACAATAACTACAATTACTCCCAACCACGCCACCTCTGCAAGACCTGCCGCCGCTACTGGACCATCGGCGGTACCCTCCGCAATATTCCGGTCGGCGGTGCAACCCGAAAATCCAACAACTCCAAATTGAAA

mRNA sequence

TTTCCAGACATGGACGCCGCGCAGAAGCAGAACATCGGATCAATCGGTGGAGATGACCGGAGAGTGAAGTGCCCCTGCCCTAGGTGCCATTCTCTCGACACCAAATTCTGCTATTACAATAACTACAATTACTCCCAACCACGCCACCTCTGCAAGACCTGCCGCCGCTACTGGACCATCGGCGGTACCCTCCGCAATATTCCGGTCGGCGGTGCAACCCGAAAATCCAACAACTCCAAATTGAAA

Coding sequence (CDS)

TTTCCAGACATGGACGCCGCGCAGAAGCAGAACATCGGATCAATCGGTGGAGATGACCGGAGAGTGAAGTGCCCCTGCCCTAGGTGCCATTCTCTCGACACCAAATTCTGCTATTACAATAACTACAATTACTCCCAACCACGCCACCTCTGCAAGACCTGCCGCCGCTACTGGACCATCGGCGGTACCCTCCGCAATATTCCGGTCGGCGGTGCAACCCGAAAATCCAACAACTCCAAATTGAAA

Protein sequence

FPDMDAAQKQNIGSIGGDDRRVKCPCPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSNNSKLK
Homology
BLAST of MC03g1241 vs. ExPASy Swiss-Prot
Match: Q8LDR0 (Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana OX=3702 GN=DOF5.4 PE=2 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-23
Identity = 50/83 (60.24%), Postives = 56/83 (67.47%), Query Frame = 0

Query: 12  IGSIGGDDRRVKC------------PCPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWT 71
           IG  GG DRR++              CPRC+SL+TKFCYYNNYN SQPRH CK CRRYWT
Sbjct: 27  IGGGGGGDRRMRAHQNNILNHHQSLKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWT 86

Query: 72  IGGTLRNIPVGGATRKSNNSKLK 83
            GG LRN+PVGG  RK+  SK K
Sbjct: 87  KGGVLRNVPVGGGCRKAKRSKTK 109

BLAST of MC03g1241 vs. ExPASy Swiss-Prot
Match: Q39088 (Dof zinc finger protein DOF3.4 OS=Arabidopsis thaliana OX=3702 GN=DOF3.4 PE=1 SV=2)

HSP 1 Score: 109.4 bits (272), Expect = 2.0e-23
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 0

Query: 7  AQKQNIGSIGGDDRRVKCPCPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRN 66
          A K N  ++   D++ + PCPRC S +TKFCYYNNYN+SQPRH CK CRRYWT GGTLR+
Sbjct: 13 AMKPNGVTVPISDQQEQLPCPRCDSSNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRD 72

Query: 67 IPVGGATRKS 77
          +PVGG TRKS
Sbjct: 73 VPVGGGTRKS 82

BLAST of MC03g1241 vs. ExPASy Swiss-Prot
Match: P38564 (Dof zinc finger protein MNB1A OS=Zea mays OX=4577 GN=MNB1A PE=1 SV=2)

HSP 1 Score: 104.8 bits (260), Expect = 4.9e-22
Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 25  PCPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSNNS 80
           PCPRC S DTKFCYYNNYN SQPRH CK CRRYWT GGTLRN+PVGG TRK  +S
Sbjct: 48  PCPRCASRDTKFCYYNNYNTSQPRHFCKGCRRYWTKGGTLRNVPVGGGTRKKPSS 102

BLAST of MC03g1241 vs. ExPASy Swiss-Prot
Match: Q9FGD6 (Dof zinc finger protein DOF5.8 OS=Arabidopsis thaliana OX=3702 GN=DOF5.8 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.4e-22
Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = 0

Query: 19 DRRVKCPCPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSN 78
          D++ +  CPRC S +TKFCYYNNYN+SQPRH CK+CRRYWT GGTLR+IPVGG +RKS+
Sbjct: 27 DQQEQLSCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGVSRKSS 85

BLAST of MC03g1241 vs. ExPASy Swiss-Prot
Match: O82155 (Dof zinc finger protein DOF1.7 OS=Arabidopsis thaliana OX=3702 GN=DOF1.7 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.4e-21
Identity = 43/52 (82.69%), Postives = 44/52 (84.62%), Query Frame = 0

Query: 26 CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSN 78
          CPRC S +TKFCYYNNYN SQPRH CK CRRYWT GG LRNIPVGG TRKSN
Sbjct: 35 CPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGTRKSN 86

BLAST of MC03g1241 vs. NCBI nr
Match: XP_022137287.1 (dof zinc finger protein DOF5.8-like [Momordica charantia])

HSP 1 Score: 179 bits (455), Expect = 1.68e-55
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0

Query: 4  MDAAQKQNIGSIGGDDRRVKCPCPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGT 63
          MDAAQKQNIGSIGGDDRRVKCPCPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGT
Sbjct: 1  MDAAQKQNIGSIGGDDRRVKCPCPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGT 60

Query: 64 LRNIPVGGATRKSNNSKLK 82
          LRNIPVGGATRKSNNSKLK
Sbjct: 61 LRNIPVGGATRKSNNSKLK 79

BLAST of MC03g1241 vs. NCBI nr
Match: XP_008445935.1 (PREDICTED: dof zinc finger protein DOF3.4-like [Cucumis melo] >TYJ98960.1 dof zinc finger protein DOF3.4-like [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (289), Expect = 7.74e-31
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 0

Query: 22 VKCPCPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSN-NSK 81
          +KC CPRC+SL TKFCYYNNYNYSQPRH CKTCRRYWT+GG LRN+PVGG +RKS  NSK
Sbjct: 10 LKCRCPRCNSLHTKFCYYNNYNYSQPRHFCKTCRRYWTLGGLLRNVPVGGGSRKSKKNSK 69

BLAST of MC03g1241 vs. NCBI nr
Match: XP_004137607.1 (dof zinc finger protein DOF1.7 [Cucumis sativus])

HSP 1 Score: 115 bits (287), Expect = 1.47e-30
Identity = 50/62 (80.65%), Postives = 53/62 (85.48%), Query Frame = 0

Query: 22 VKCPCPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSN-NSK 81
          +K  CPRC+SL TKFCYYNNYNYSQPRH CKTCRRYWT+GG LRNIPVGG TRKS  NSK
Sbjct: 10 LKSQCPRCNSLHTKFCYYNNYNYSQPRHFCKTCRRYWTLGGLLRNIPVGGGTRKSKKNSK 69

BLAST of MC03g1241 vs. NCBI nr
Match: KAF6984052.1 (hypothetical protein CFC21_002111 [Triticum aestivum] >CDM82537.1 unnamed protein product [Triticum aestivum])

HSP 1 Score: 117 bits (292), Expect = 2.16e-30
Identity = 49/73 (67.12%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 7  AQKQNIGSIGGDDRRVKCPCPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRN 66
          A    +   G  +R  +CPCPRC S DTKFCYYNNYN SQPRH CK CRRYWT GG LRN
Sbjct: 18 AASGGVRRAGEPERLAQCPCPRCESTDTKFCYYNNYNLSQPRHFCKGCRRYWTRGGALRN 77

Query: 67 IPVGGATRKSNNS 79
          +PVGGATRK N S
Sbjct: 78 VPVGGATRKPNGS 90

BLAST of MC03g1241 vs. NCBI nr
Match: APR63144.1 (dof zinc finger Protein [Triticum aestivum])

HSP 1 Score: 117 bits (292), Expect = 2.16e-30
Identity = 49/73 (67.12%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 7  AQKQNIGSIGGDDRRVKCPCPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRN 66
          A    +   G  +R  +CPCPRC S DTKFCYYNNYN SQPRH CK CRRYWT GG LRN
Sbjct: 18 AASGGVRRAGEPERLAQCPCPRCESTDTKFCYYNNYNLSQPRHFCKGCRRYWTRGGALRN 77

Query: 67 IPVGGATRKSNNS 79
          +PVGGATRK N S
Sbjct: 78 VPVGGATRKPNGS 90

BLAST of MC03g1241 vs. ExPASy TrEMBL
Match: A0A6J1C7U6 (dof zinc finger protein DOF5.8-like OS=Momordica charantia OX=3673 GN=LOC111008785 PE=4 SV=1)

HSP 1 Score: 179 bits (455), Expect = 8.15e-56
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0

Query: 4  MDAAQKQNIGSIGGDDRRVKCPCPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGT 63
          MDAAQKQNIGSIGGDDRRVKCPCPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGT
Sbjct: 1  MDAAQKQNIGSIGGDDRRVKCPCPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGT 60

Query: 64 LRNIPVGGATRKSNNSKLK 82
          LRNIPVGGATRKSNNSKLK
Sbjct: 61 LRNIPVGGATRKSNNSKLK 79

BLAST of MC03g1241 vs. ExPASy TrEMBL
Match: A0A5D3BGN5 (Dof zinc finger protein DOF3.4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001620 PE=4 SV=1)

HSP 1 Score: 115 bits (289), Expect = 3.75e-31
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 0

Query: 22 VKCPCPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSN-NSK 81
          +KC CPRC+SL TKFCYYNNYNYSQPRH CKTCRRYWT+GG LRN+PVGG +RKS  NSK
Sbjct: 10 LKCRCPRCNSLHTKFCYYNNYNYSQPRHFCKTCRRYWTLGGLLRNVPVGGGSRKSKKNSK 69

BLAST of MC03g1241 vs. ExPASy TrEMBL
Match: A0A1S3BDV3 (dof zinc finger protein DOF3.4-like OS=Cucumis melo OX=3656 GN=LOC103488810 PE=4 SV=1)

HSP 1 Score: 115 bits (289), Expect = 3.75e-31
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 0

Query: 22 VKCPCPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSN-NSK 81
          +KC CPRC+SL TKFCYYNNYNYSQPRH CKTCRRYWT+GG LRN+PVGG +RKS  NSK
Sbjct: 10 LKCRCPRCNSLHTKFCYYNNYNYSQPRHFCKTCRRYWTLGGLLRNVPVGGGSRKSKKNSK 69

BLAST of MC03g1241 vs. ExPASy TrEMBL
Match: A0A453E600 (Dof-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)

HSP 1 Score: 115 bits (287), Expect = 4.50e-31
Identity = 47/68 (69.12%), Postives = 51/68 (75.00%), Query Frame = 0

Query: 12  IGSIGGDDRRVKCPCPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGG 71
           +   G  +R  +CPCPRC S DTKFCYYNNYN SQPRH CK CRRYWT GG LRN+PVGG
Sbjct: 63  VRRAGEPERLAQCPCPRCESTDTKFCYYNNYNLSQPRHFCKGCRRYWTRGGALRNVPVGG 122

Query: 72  ATRKSNNS 79
            TRK N S
Sbjct: 123 GTRKPNGS 130

BLAST of MC03g1241 vs. ExPASy TrEMBL
Match: A0A0A0LTJ9 (Dof-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039960 PE=4 SV=1)

HSP 1 Score: 115 bits (287), Expect = 7.13e-31
Identity = 50/62 (80.65%), Postives = 53/62 (85.48%), Query Frame = 0

Query: 22 VKCPCPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSN-NSK 81
          +K  CPRC+SL TKFCYYNNYNYSQPRH CKTCRRYWT+GG LRNIPVGG TRKS  NSK
Sbjct: 10 LKSQCPRCNSLHTKFCYYNNYNYSQPRHFCKTCRRYWTLGGLLRNIPVGGGTRKSKKNSK 69

BLAST of MC03g1241 vs. TAIR 10
Match: AT5G60850.1 (OBF binding protein 4 )

HSP 1 Score: 109.8 bits (273), Expect = 1.1e-24
Identity = 50/83 (60.24%), Postives = 56/83 (67.47%), Query Frame = 0

Query: 12  IGSIGGDDRRVKC------------PCPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWT 71
           IG  GG DRR++              CPRC+SL+TKFCYYNNYN SQPRH CK CRRYWT
Sbjct: 27  IGGGGGGDRRMRAHQNNILNHHQSLKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWT 86

Query: 72  IGGTLRNIPVGGATRKSNNSKLK 83
            GG LRN+PVGG  RK+  SK K
Sbjct: 87  KGGVLRNVPVGGGCRKAKRSKTK 109

BLAST of MC03g1241 vs. TAIR 10
Match: AT3G50410.1 (OBF binding protein 1 )

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-24
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 0

Query: 7  AQKQNIGSIGGDDRRVKCPCPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRN 66
          A K N  ++   D++ + PCPRC S +TKFCYYNNYN+SQPRH CK CRRYWT GGTLR+
Sbjct: 13 AMKPNGVTVPISDQQEQLPCPRCDSSNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRD 72

Query: 67 IPVGGATRKS 77
          +PVGG TRKS
Sbjct: 73 VPVGGGTRKS 82

BLAST of MC03g1241 vs. TAIR 10
Match: AT5G66940.1 (Dof-type zinc finger DNA-binding family protein )

HSP 1 Score: 104.4 bits (259), Expect = 4.5e-23
Identity = 42/59 (71.19%), Postives = 51/59 (86.44%), Query Frame = 0

Query: 19 DRRVKCPCPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSN 78
          D++ +  CPRC S +TKFCYYNNYN+SQPRH CK+CRRYWT GGTLR+IPVGG +RKS+
Sbjct: 27 DQQEQLSCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGVSRKSS 85

BLAST of MC03g1241 vs. TAIR 10
Match: AT1G51700.1 (DOF zinc finger protein 1 )

HSP 1 Score: 102.4 bits (254), Expect = 1.7e-22
Identity = 43/52 (82.69%), Postives = 44/52 (84.62%), Query Frame = 0

Query: 26 CPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSN 78
          CPRC S +TKFCYYNNYN SQPRH CK CRRYWT GG LRNIPVGG TRKSN
Sbjct: 35 CPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGTRKSN 86

BLAST of MC03g1241 vs. TAIR 10
Match: AT3G47500.1 (cycling DOF factor 3 )

HSP 1 Score: 100.1 bits (248), Expect = 8.5e-22
Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 25  PCPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSNNS 80
           PCPRC S++TKFCYYNNYN +QPRH CK C+RYWT GGT+RN+PVG   RK+ +S
Sbjct: 111 PCPRCKSMETKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKSS 165

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8LDR01.5e-2360.24Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana OX=3702 GN=DOF5.4 PE=2 SV... [more]
Q390882.0e-2365.71Dof zinc finger protein DOF3.4 OS=Arabidopsis thaliana OX=3702 GN=DOF3.4 PE=1 SV... [more]
P385644.9e-2280.00Dof zinc finger protein MNB1A OS=Zea mays OX=4577 GN=MNB1A PE=1 SV=2[more]
Q9FGD66.4e-2271.19Dof zinc finger protein DOF5.8 OS=Arabidopsis thaliana OX=3702 GN=DOF5.8 PE=2 SV... [more]
O821552.4e-2182.69Dof zinc finger protein DOF1.7 OS=Arabidopsis thaliana OX=3702 GN=DOF1.7 PE=2 SV... [more]
Match NameE-valueIdentityDescription
XP_022137287.11.68e-55100.00dof zinc finger protein DOF5.8-like [Momordica charantia][more]
XP_008445935.17.74e-3179.03PREDICTED: dof zinc finger protein DOF3.4-like [Cucumis melo] >TYJ98960.1 dof zi... [more]
XP_004137607.11.47e-3080.65dof zinc finger protein DOF1.7 [Cucumis sativus][more]
KAF6984052.12.16e-3067.12hypothetical protein CFC21_002111 [Triticum aestivum] >CDM82537.1 unnamed protei... [more]
APR63144.12.16e-3067.12dof zinc finger Protein [Triticum aestivum][more]
Match NameE-valueIdentityDescription
A0A6J1C7U68.15e-56100.00dof zinc finger protein DOF5.8-like OS=Momordica charantia OX=3673 GN=LOC1110087... [more]
A0A5D3BGN53.75e-3179.03Dof zinc finger protein DOF3.4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A1S3BDV33.75e-3179.03dof zinc finger protein DOF3.4-like OS=Cucumis melo OX=3656 GN=LOC103488810 PE=4... [more]
A0A453E6004.50e-3169.12Dof-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=20... [more]
A0A0A0LTJ97.13e-3180.65Dof-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039960 PE... [more]
Match NameE-valueIdentityDescription
AT5G60850.11.1e-2460.24OBF binding protein 4 [more]
AT3G50410.11.4e-2465.71OBF binding protein 1 [more]
AT5G66940.14.5e-2371.19Dof-type zinc finger DNA-binding family protein [more]
AT1G51700.11.7e-2282.69DOF zinc finger protein 1 [more]
AT3G47500.18.5e-2269.09cycling DOF factor 3 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003851Zinc finger, Dof-typePFAMPF02701zf-Dofcoord: 24..78
e-value: 4.8E-31
score: 106.7
IPR003851Zinc finger, Dof-typePROSITEPS01361ZF_DOF_1coord: 26..62
IPR003851Zinc finger, Dof-typePROSITEPS50884ZF_DOF_2coord: 24..78
score: 27.428223
NoneNo IPR availablePANTHERPTHR31992:SF203DOF ZINC FINGER PROTEIN DOF3.4-LIKEcoord: 21..80
NoneNo IPR availablePANTHERPTHR31992DOF ZINC FINGER PROTEIN DOF1.4-RELATEDcoord: 21..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC03g1241.1MC03g1241.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding