MC03g0978 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC03g0978
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionMitovirus RNA-dependent RNA polymerase
LocationMC03: 16332357 .. 16332464 (+)
RNA-Seq ExpressionMC03g0978
SyntenyMC03g0978
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCTATTCACACTTACACATCATATGCTTGTGTGGATAGCTGTTGAGAGGGTGTATGGCACGACGAAGTTTTGCGACTATGCCATTCTTGGCGACGGTGAAACCATT

mRNA sequence

CCTCTATTCACACTTACACATCATATGCTTGTGTGGATAGCTGTTGAGAGGGTGTATGGCACGACGAAGTTTTGCGACTATGCCATTCTTGGCGACGGTGAAACCATT

Coding sequence (CDS)

CCTCTATTCACACTTACACATCATATGCTTGTGTGGATAGCTGTTGAGAGGGTGTATGGCACGACGAAGTTTTGCGACTATGCCATTCTTGGCGACGGTGAAACCATT

Protein sequence

PLFTLTHHMLVWIAVERVYGTTKFCDYAILGDGETI
Homology
BLAST of MC03g0978 vs. NCBI nr
Match: KAG5568278.1 (hypothetical protein H5410_064699 [Solanum commersonii])

HSP 1 Score: 70.5 bits (171), Expect = 2.08e-14
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 0

Query: 1  PLFTLTHHMLVWIAVERVYGTTKFCDYAILGDGE 34
          PLFTL HHMLVWIA ERVYGTTK CDYAILGDG+
Sbjct: 56 PLFTLKHHMLVWIATERVYGTTKLCDYAILGDGD 89

BLAST of MC03g0978 vs. NCBI nr
Match: THG00166.1 (hypothetical protein TEA_003359 [Camellia sinensis var. sinensis])

HSP 1 Score: 72.8 bits (177), Expect = 6.60e-14
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0

Query: 1   PLFTLTHHMLVWIAVERVYGTTKFCDYAILGDGE 34
           PLFTLTHHMLVWIA ERVYGTTK CDYAILGDG+
Sbjct: 224 PLFTLTHHMLVWIAAERVYGTTKLCDYAILGDGD 257

BLAST of MC03g0978 vs. NCBI nr
Match: KAF3974216.1 (hypothetical protein CMV_002445 [Castanea mollissima])

HSP 1 Score: 72.8 bits (177), Expect = 9.84e-14
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0

Query: 1   PLFTLTHHMLVWIAVERVYGTTKFCDYAILGDGE 34
           PLFTLTHHMLVWIA ERVYGTTK CDYAILGDG+
Sbjct: 267 PLFTLTHHMLVWIAAERVYGTTKLCDYAILGDGD 300

BLAST of MC03g0978 vs. NCBI nr
Match: YP_009315967.1 (hypothetical protein [Cocos nucifera] >AOX12961.1 hypothetical protein [Cocos nucifera])

HSP 1 Score: 68.6 bits (166), Expect = 1.03e-13
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0

Query: 1  PLFTLTHHMLVWIAVERVYGTTKFCDYAILGDGE 34
          PLFTLTHHMLVWIA ERVYGTTK C YAI+GDG+
Sbjct: 54 PLFTLTHHMLVWIAAERVYGTTKLCYYAIIGDGD 87

BLAST of MC03g0978 vs. NCBI nr
Match: KAF4346743.1 (hypothetical protein F8388_002529, partial [Cannabis sativa])

HSP 1 Score: 50.1 bits (118), Expect = 7.89e-07
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 0

Query: 1  PLFTLTHHMLVWIAVERVY-GTTKFCDYAILGDGETI 36
          P+F+L+HHM+VW+A ERVY G+ KF  YAILGD   I
Sbjct: 6  PMFSLSHHMVVWLAAERVYPGSGKFKAYAILGDDVVI 42

BLAST of MC03g0978 vs. ExPASy TrEMBL
Match: A0A4S4DEK5 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_003359 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.19e-14
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0

Query: 1   PLFTLTHHMLVWIAVERVYGTTKFCDYAILGDGE 34
           PLFTLTHHMLVWIA ERVYGTTK CDYAILGDG+
Sbjct: 224 PLFTLTHHMLVWIAAERVYGTTKLCDYAILGDGD 257

BLAST of MC03g0978 vs. ExPASy TrEMBL
Match: A0A2Z2C8R3 (Uncharacterized protein OS=Cocos nucifera OX=13894 GN=orf119 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.97e-14
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0

Query: 1  PLFTLTHHMLVWIAVERVYGTTKFCDYAILGDGE 34
          PLFTLTHHMLVWIA ERVYGTTK C YAI+GDG+
Sbjct: 54 PLFTLTHHMLVWIAAERVYGTTKLCYYAIIGDGD 87

BLAST of MC03g0978 vs. ExPASy TrEMBL
Match: A0A7J6DKW9 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_002529 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.82e-07
Identity = 23/37 (62.16%), Postives = 29/37 (78.38%), Query Frame = 0

Query: 1  PLFTLTHHMLVWIAVERVY-GTTKFCDYAILGDGETI 36
          P+F+L+HHM+VW+A ERVY G+ KF  YAILGD   I
Sbjct: 6  PMFSLSHHMVVWLAAERVYPGSGKFKAYAILGDDVVI 42

BLAST of MC03g0978 vs. ExPASy TrEMBL
Match: A0A2Z6JVB3 (RNA-dependent RNA polymerase OS=Dahlia pinnata mitovirus 1 OX=2080459 GN=RdRp PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.65e-06
Identity = 22/32 (68.75%), Postives = 25/32 (78.12%), Query Frame = 0

Query: 1   PLFTLTHHMLVWIAVERVYGTTKFCDYAILGD 32
           P F LTHHM+VW+A  RVY T KF DYA+LGD
Sbjct: 458 PSFALTHHMVVWLAAWRVYPTQKFKDYALLGD 489

BLAST of MC03g0978 vs. ExPASy TrEMBL
Match: A0A2Z6JKI7 (RNA-dependent RNA polymerase OS=Dahlia pinnata mitovirus 1 OX=2080459 GN=RdRp PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.65e-06
Identity = 22/32 (68.75%), Postives = 25/32 (78.12%), Query Frame = 0

Query: 1   PLFTLTHHMLVWIAVERVYGTTKFCDYAILGD 32
           P F LTHHM+VW+A  RVY T KF DYA+LGD
Sbjct: 458 PSFALTHHMVVWLAAWRVYPTQKFKDYALLGD 489

BLAST of MC03g0978 vs. TAIR 10
Match: ATMG01410.1 (open reading frame 204 )

HSP 1 Score: 40.8 bits (94), Expect = 2.7e-04
Identity = 16/36 (44.44%), Postives = 23/36 (63.89%), Query Frame = 0

Query: 1   PLFTLTHHMLVWIAVERVYGTTKFCDYAILGDGETI 37
           P F L+HH+LVW   ++V+   +F  YA+LGD   I
Sbjct: 102 PTFALSHHILVWWCAKQVHPGVRFTSYAVLGDDVVI 137

BLAST of MC03g0978 vs. TAIR 10
Match: AT2G07749.1 (Mitovirus RNA-dependent RNA polymerase )

HSP 1 Score: 39.3 bits (90), Expect = 7.8e-04
Identity = 18/33 (54.55%), Postives = 22/33 (66.67%), Query Frame = 0

Query: 2   LFTLTHHMLVWIAVERVY--GTTKFCDYAILGD 33
           LF L+HH +VW+A  R Y   T  F DYA+LGD
Sbjct: 96  LFALSHHAIVWLAALRAYPHQTRPFLDYALLGD 128

BLAST of MC03g0978 vs. TAIR 10
Match: ATMG01110.1 (Mitovirus RNA-dependent RNA polymerase )

HSP 1 Score: 39.3 bits (90), Expect = 7.8e-04
Identity = 18/33 (54.55%), Postives = 22/33 (66.67%), Query Frame = 0

Query: 2   LFTLTHHMLVWIAVERVY--GTTKFCDYAILGD 33
           LF L+HH +VW+A  R Y   T  F DYA+LGD
Sbjct: 101 LFALSHHAIVWLAALRAYPHQTRPFLDYALLGD 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG5568278.12.08e-1488.24hypothetical protein H5410_064699 [Solanum commersonii][more]
THG00166.16.60e-1491.18hypothetical protein TEA_003359 [Camellia sinensis var. sinensis][more]
KAF3974216.19.84e-1491.18hypothetical protein CMV_002445 [Castanea mollissima][more]
YP_009315967.11.03e-1385.29hypothetical protein [Cocos nucifera] >AOX12961.1 hypothetical protein [Cocos nu... [more]
KAF4346743.17.89e-0762.16hypothetical protein F8388_002529, partial [Cannabis sativa][more]
Match NameE-valueIdentityDescription
A0A4S4DEK53.19e-1491.18Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0033... [more]
A0A2Z2C8R34.97e-1485.29Uncharacterized protein OS=Cocos nucifera OX=13894 GN=orf119 PE=4 SV=1[more]
A0A7J6DKW93.82e-0762.16Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_002529 PE=4 SV=1[more]
A0A2Z6JVB31.65e-0668.75RNA-dependent RNA polymerase OS=Dahlia pinnata mitovirus 1 OX=2080459 GN=RdRp PE... [more]
A0A2Z6JKI71.65e-0668.75RNA-dependent RNA polymerase OS=Dahlia pinnata mitovirus 1 OX=2080459 GN=RdRp PE... [more]
Match NameE-valueIdentityDescription
ATMG01410.12.7e-0444.44open reading frame 204 [more]
AT2G07749.17.8e-0454.55Mitovirus RNA-dependent RNA polymerase [more]
ATMG01110.17.8e-0454.55Mitovirus RNA-dependent RNA polymerase [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008686RNA-dependent RNA polymerase, mitoviralPFAMPF05919Mitovir_RNA_polcoord: 1..32
e-value: 2.0E-8
score: 33.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC03g0978.1MC03g0978.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion