MC03g0925 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC03g0925
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	28S ribosomal protein S33, mitochondrial
Location	MC03: 15928001 .. 15928998 (-)
RNA-Seq Expression	MC03g0925
Synteny	MC03g0925

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTAATAGCCTGAAGAGTATTATTGCTACAGCAGTCAATATGGGAGTGACAGAGGCAAGGGCAAGGATATTTGGTCATGTACTTAACCCAACAGGTCAACGATCAACCCACAAGCTTTTGCGTAAAAAACTCATTGGCGATAAAGTATCTCAGTGGTATCCATACGACATCAAGAAGGACGATCCTCTCGTTATGGCTCGTCAAGAACAAGAGTACCCTCTCTCTCATATGAATTTTCCCAGTGAATATATTAACTATCAAGTGGTATTATTAGGAGAAGGGGTGGTTTGTGTAAAGGCTGCATGTGAAGATTTTAGTATTAAAAATGGGGGGTAAATTGCAAAAGCTAACCCTATACACAAGGGGTTGATTTGTGCAAATATATATATTTTTTCTGTTAAACTGAATTAAAAGGATACTTATTGAGGATAATATTTGCATGCAGCTTAAATTGGAGGAGTGATATTTGTATACGAGCTGCAAGGACATAATTTGCAAGTTGAAAAAAAAATATGATGAAATCAACATTTTAACAAGATCACCTTCATGTGGGAACTTGGAGTATACATGTTACTTGTGAAAATGAAGTTACAAACAATGCATGCTTTTGTTAATTAAGATCTGAATCTTTATGTAATTTGGAAAAGGGAATCATCATGAGAGTTCCGTCGGGGTTTAGTGACAGAGTTTCAAATGTTTCTCACCTGCTAAAATGAGGGCAACGTCTTATCTGGGTTTTTTACTTTTAAGTGGCTAATCAATTACATAAACTTGGAAAGCTTGGTGATTGATTTTATATATTGTTATTCAATTGTTTTGGTGTACTTTCTGCCTCGTATTTGCAACTTATTGGTCAATAAACTCTTCTCAATATCCTGATTATATCTGGCATCCACTTTGCTAGGCGCTTGTCCAAGCTTGAAATGCTGAAGCGGCGTGGTAAGGGGCCGCCTAAGAAGGGCCAAGGCAGGCGTGCAGCCAAGCGCAATAAG

mRNA sequence

ATGGCTACTAATAGCCTGAAGAGTATTATTGCTACAGCAGTCAATATGGGAGTGACAGAGGCAAGGGCAAGGATATTTGGTCATGTACTTAACCCAACAGGTCAACGATCAACCCACAAGCTTTTGCGTAAAAAACTCATTGGCGATAAAGTATCTCAGTGGTATCCATACGACATCAAGAAGGACGATCCTCTCGTTATGGCTCGTCAAGAACAAGAGCGCTTGTCCAAGCTTGAAATGCTGAAGCGGCGTGGTAAGGGGCCGCCTAAGAAGGGCCAAGGCAGGCGTGCAGCCAAGCGCAATAAG

Coding sequence (CDS)

ATGGCTACTAATAGCCTGAAGAGTATTATTGCTACAGCAGTCAATATGGGAGTGACAGAGGCAAGGGCAAGGATATTTGGTCATGTACTTAACCCAACAGGTCAACGATCAACCCACAAGCTTTTGCGTAAAAAACTCATTGGCGATAAAGTATCTCAGTGGTATCCATACGACATCAAGAAGGACGATCCTCTCGTTATGGCTCGTCAAGAACAAGAGCGCTTGTCCAAGCTTGAAATGCTGAAGCGGCGTGGTAAGGGGCCGCCTAAGAAGGGCCAAGGCAGGCGTGCAGCCAAGCGCAATAAG

Protein sequence

MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK

Homology

[Close]

BLAST of MC03g0925 vs. ExPASy Swiss-Prot
Match: P53305 (Mitochondrial 37S ribosomal protein S27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RSM27 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.3e-04
Identity = 36/90 (40.00%), Postives = 48/90 (53.33%), Query Frame = 0


Query: 18  VTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPY-DIKK--------DDPLVMA 77
           V E  A+IF    NP+G R+  K+L ++L G  V+ +Y   DI K         D   + 
Sbjct: 11  VAELSAKIFDQNFNPSGIRTGSKILNERLKGPSVASYYGNPDILKFRHLKTLYPDIEFVD 70

Query: 78  RQEQERLSKLEMLKRRGKGPPKKGQGRRAA 99
            +EQ RLS +E  KRRGKG PKK +   AA
Sbjct: 71  LEEQYRLSMVEAKKRRGKGAPKKMKKDAAA 100

[Close]

BLAST of MC03g0925 vs. NCBI nr
Match: XP_022137168.1 (28S ribosomal protein S33, mitochondrial [Momordica charantia] >XP_022137169.1 28S ribosomal protein S33, mitochondrial [Momordica charantia])

HSP 1 Score: 196 bits (498), Expect = 5.58e-63
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK
Sbjct: 1   MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102
           KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]

BLAST of MC03g0925 vs. NCBI nr
Match: XP_038876969.1 (28S ribosomal protein S33, mitochondrial [Benincasa hispida] >XP_038876970.1 28S ribosomal protein S33, mitochondrial [Benincasa hispida])

HSP 1 Score: 189 bits (481), Expect = 2.19e-60
Identity = 96/102 (94.12%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 1   MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MATN LKS++A AVNMGVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKV+QWYPYDIK
Sbjct: 1   MATNGLKSMVAAAVNMGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102
           KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]

BLAST of MC03g0925 vs. NCBI nr
Match: XP_004145134.1 (28S ribosomal protein S33, mitochondrial isoform X2 [Cucumis sativus] >XP_031745998.1 28S ribosomal protein S33, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 187 bits (476), Expect = 1.27e-59
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MATNSLKS+IA AVN GVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK
Sbjct: 1   MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102
           KDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]

BLAST of MC03g0925 vs. NCBI nr
Match: XP_023000758.1 (28S ribosomal protein S33, mitochondrial [Cucurbita maxima] >XP_023000759.1 28S ribosomal protein S33, mitochondrial [Cucurbita maxima])

HSP 1 Score: 186 bits (473), Expect = 3.64e-59
Identity = 95/102 (93.14%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MATNSLK +IA AVN GVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKV++WYPYDIK
Sbjct: 1   MATNSLKGMIAAAVNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102
           KDDPL+MARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]

BLAST of MC03g0925 vs. NCBI nr
Match: XP_031745997.1 (uncharacterized protein LOC101219254 isoform X1 [Cucumis sativus])

HSP 1 Score: 187 bits (476), Expect = 4.42e-59
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MATNSLKS+IA AVN GVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK
Sbjct: 40  MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 99

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102
           KDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 100 KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 141

[Close]

BLAST of MC03g0925 vs. ExPASy TrEMBL
Match: A0A6J1C6H4 (28S ribosomal protein S33, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111008711 PE=3 SV=1)

HSP 1 Score: 196 bits (498), Expect = 2.70e-63
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK
Sbjct: 1   MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102
           KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]

BLAST of MC03g0925 vs. ExPASy TrEMBL
Match: A0A0A0LRA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G056910 PE=3 SV=1)

HSP 1 Score: 187 bits (476), Expect = 6.14e-60
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MATNSLKS+IA AVN GVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK
Sbjct: 1   MATNSLKSMIAAAVNKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102
           KDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]

BLAST of MC03g0925 vs. ExPASy TrEMBL
Match: A0A6J1KNI8 (28S ribosomal protein S33, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111495113 PE=3 SV=1)

HSP 1 Score: 186 bits (473), Expect = 1.76e-59
Identity = 95/102 (93.14%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MATNSLK +IA AVN GVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKV++WYPYDIK
Sbjct: 1   MATNSLKGMIAAAVNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102
           KDDPL+MARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]

BLAST of MC03g0925 vs. ExPASy TrEMBL
Match: A0A6J1EDC3 (28S ribosomal protein S33, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111431499 PE=3 SV=1)

HSP 1 Score: 185 bits (470), Expect = 5.05e-59
Identity = 94/102 (92.16%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MATNSLK +IA A+N GVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKV++WYPYDIK
Sbjct: 1   MATNSLKGMIAAALNKGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVAEWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102
           KDDPL+MARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLIMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]

BLAST of MC03g0925 vs. ExPASy TrEMBL
Match: A0A5A7UM66 (28S ribosomal protein S33 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005060 PE=3 SV=1)

HSP 1 Score: 184 bits (468), Expect = 1.02e-58
Identity = 95/102 (93.14%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MATNSLKS+IA AV+ GVTEARARIFGH+LNPTGQRSTHKLLRKKLIGDKV+QWYPYDIK
Sbjct: 1   MATNSLKSMIAAAVSKGVTEARARIFGHILNPTGQRSTHKLLRKKLIGDKVAQWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102
           KDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK
Sbjct: 61  KDDPLVMARLEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 102

[Close]

BLAST of MC03g0925 vs. TAIR 10
Match: AT5G44710.1 (CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219); Has 101 Blast hits to 101 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). )

HSP 1 Score: 161.8 bits (408), Expect = 3.0e-40
Identity = 80/102 (78.43%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 1   MATNSLKSIIATAVNMGVTEARARIFGHVLNPTGQRSTHKLLRKKLIGDKVSQWYPYDIK 60
           MA+ SLKS+I++AV  GVTEARARIFGH+LNPTGQRS HK+LRKKLIGDKV++WYPYDIK
Sbjct: 1   MASGSLKSLISSAVGRGVTEARARIFGHMLNPTGQRSPHKILRKKLIGDKVAEWYPYDIK 60

Query: 61  KDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK 103
            +DP V+AR+E+ER+SKLEMLKRR KGPPKKG G+RAAKRNK
Sbjct: 61  NEDPNVLAREEKERISKLEMLKRRDKGPPKKGHGKRAAKRNK 102

The following BLAST results are available for this feature:

BLAST of MC03g0925 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P53305	3.3e-04	40.00	Mitochondrial 37S ribosomal protein S27 OS=Saccharomyces cerevisiae (strain ATCC...	[more]

BLAST of MC03g0925 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137168.1	5.58e-63	100.00	28S ribosomal protein S33, mitochondrial [Momordica charantia] >XP_022137169.1 2...	[more]
XP_038876969.1	2.19e-60	94.12	28S ribosomal protein S33, mitochondrial [Benincasa hispida] >XP_038876970.1 28S...	[more]
XP_004145134.1	1.27e-59	95.10	28S ribosomal protein S33, mitochondrial isoform X2 [Cucumis sativus] >XP_031745...	[more]
XP_023000758.1	3.64e-59	93.14	28S ribosomal protein S33, mitochondrial [Cucurbita maxima] >XP_023000759.1 28S ...	[more]
XP_031745997.1	4.42e-59	95.10	uncharacterized protein LOC101219254 isoform X1 [Cucumis sativus]	[more]

BLAST of MC03g0925 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C6H4	2.70e-63	100.00	28S ribosomal protein S33, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A0A0LRA7	6.14e-60	95.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G056910 PE=3 SV=1	[more]
A0A6J1KNI8	1.76e-59	93.14	28S ribosomal protein S33, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1EDC3	5.05e-59	92.16	28S ribosomal protein S33, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5A7UM66	1.02e-58	93.14	28S ribosomal protein S33 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of MC03g0925 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G44710.1	3.0e-40	78.43	CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33, mitochondrial (InterPro:I...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013219	Ribosomal protein S27/S33, mitochondrial	PFAM	PF08293	MRP-S33	coord: 18..91 e-value: 9.7E-15 score: 54.6
IPR013219	Ribosomal protein S27/S33, mitochondrial	PANTHER	PTHR13362	MITOCHONDRIAL RIBOSOMAL PROTEIN S33	coord: 1..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..102
None	No IPR available	PANTHER	PTHR13362:SF4	BNAANNG05200D PROTEIN	coord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC03g0925.1	MC03g0925.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome