MC03g0898 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC03g0898
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionp55
LocationMC03: 15638565 .. 15638984 (+)
RNA-Seq ExpressionMC03g0898
SyntenyMC03g0898
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGAGTATCACCGTGAACATAGTAGCCGCGGGCTCCATTCTCCCCCAGCATCGCCCTCCAAATTAGACTCACCACGCCAAAAATACCCTTCCAATAATTACCGCCCAGTCCCAGTAACGCCGACGATTAAGACTCCCAAGCCCCGTGATGCAAAGAGGAGACGGAGCCCCAGCTCCAGCGAGCGTGATCAGCCTCCAACCAACAGGCAACGAACCGACAGGGCCGATGATGGCCAGAAGGTGGAGTTGGGTGAGGGAGGCTCTACTTTTTCATTGTATGGTCTGATGGTGAATATGGAGCACATGGCTAAGATGGTGCGGAGGGCAGATTTTGATTTGAGGAGTGATCCTGTGCTGGCTTGCCTTGTGTCGGCGCAGACTGTGATGATGGCCTGCACCGCCGACCTCATCTCCAGG

mRNA sequence

ATGGGCGAGTATCACCGTGAACATAGTAGCCGCGGGCTCCATTCTCCCCCAGCATCGCCCTCCAAATTAGACTCACCACGCCAAAAATACCCTTCCAATAATTACCGCCCAGTCCCAGTAACGCCGACGATTAAGACTCCCAAGCCCCGTGATGCAAAGAGGAGACGGAGCCCCAGCTCCAGCGAGCGTGATCAGCCTCCAACCAACAGGCAACGAACCGACAGGGCCGATGATGGCCAGAAGGTGGAGTTGGGTGAGGGAGGCTCTACTTTTTCATTGTATGGTCTGATGGTGAATATGGAGCACATGGCTAAGATGGTGCGGAGGGCAGATTTTGATTTGAGGAGTGATCCTGTGCTGGCTTGCCTTGTGTCGGCGCAGACTGTGATGATGGCCTGCACCGCCGACCTCATCTCCAGG

Coding sequence (CDS)

ATGGGCGAGTATCACCGTGAACATAGTAGCCGCGGGCTCCATTCTCCCCCAGCATCGCCCTCCAAATTAGACTCACCACGCCAAAAATACCCTTCCAATAATTACCGCCCAGTCCCAGTAACGCCGACGATTAAGACTCCCAAGCCCCGTGATGCAAAGAGGAGACGGAGCCCCAGCTCCAGCGAGCGTGATCAGCCTCCAACCAACAGGCAACGAACCGACAGGGCCGATGATGGCCAGAAGGTGGAGTTGGGTGAGGGAGGCTCTACTTTTTCATTGTATGGTCTGATGGTGAATATGGAGCACATGGCTAAGATGGTGCGGAGGGCAGATTTTGATTTGAGGAGTGATCCTGTGCTGGCTTGCCTTGTGTCGGCGCAGACTGTGATGATGGCCTGCACCGCCGACCTCATCTCCAGG

Protein sequence

MGEYHREHSSRGLHSPPASPSKLDSPRQKYPSNNYRPVPVTPTIKTPKPRDAKRRRSPSSSERDQPPTNRQRTDRADDGQKVELGEGGSTFSLYGLMVNMEHMAKMVRRADFDLRSDPVLACLVSAQTVMMACTADLISR
Homology
BLAST of MC03g0898 vs. NCBI nr
Match: KGN64496.1 (hypothetical protein Csa_013860 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 5.19e-12
Identity = 52/138 (37.68%), Postives = 81/138 (58.70%), Query Frame = 0

Query: 10  SRGLHSPPASPSKLDSPRQKYPSNNYRPVPVTPTIKTPKPRDAKRRRSPSSS----ERDQ 69
           + G+ +PP+SPSK ++P  K+P  +     V P  +TP P   K+R +P S     + D+
Sbjct: 8   AHGIFNPPSSPSKKNTP--KFPGRSS----VEP--QTPDPVHGKKRPAPVSPNDDFQHDR 67

Query: 70  PPTNRQRTDRADDGQKVELGEGGSTFSLYGLMVNMEHMAKMVRRADFD---LRSDPVLAC 129
           PPT +++TD A++G   ++        +  L+  +E M KM++R       L SDP+LAC
Sbjct: 68  PPTQKRKTDNAEEGSSSDV-------PMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLAC 127

Query: 130 LVSAQTVMMACTADLISR 140
            VSAQ ++ ACTA+LISR
Sbjct: 128 FVSAQALLTACTAELISR 130

BLAST of MC03g0898 vs. NCBI nr
Match: KAG6584107.1 (hypothetical protein SDJN03_20039, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.1 bits (157), Expect = 5.22e-10
Identity = 51/124 (41.13%), Postives = 67/124 (54.03%), Query Frame = 0

Query: 25  SPRQKYPSNNYRPV----PVTPTIKTPKPRDAKRRRSPSSSERDQPPTNRQRTDRADDGQ 84
           SPR    S    P+    PVTP ++  + R A    SP S+   +PPT R+R   + DG 
Sbjct: 18  SPRPSTDSKETEPISPPNPVTPNLRGSRKRSAP---SPMSNPEHEPPTQRRRD--SGDGN 77

Query: 85  KVELGEGG--STFSLYGLMVNMEHMAKMVRRADFD--LRSDPVLACLVSAQTVMMACTAD 140
           K+E GE    S+  L  L+ NME + K ++R      L  DP+L CLVS+QT MM C A 
Sbjct: 78  KLEYGEDADWSSIPLARLIGNMEEVVKSLKRVGGQEGLMIDPLLGCLVSSQTSMMLCLAH 136

BLAST of MC03g0898 vs. NCBI nr
Match: KAA0056836.1 (p55 [Cucumis melo var. makuwa] >TYJ99337.1 p55 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 1.54e-08
Identity = 50/129 (38.76%), Postives = 70/129 (54.26%), Query Frame = 0

Query: 13  LHSPPASPSKLDSPRQKYPSNNYRPVPVTPTIKTPKPRDAKRRRSPSS-SERDQPPTNRQ 72
           + +PP SP + ++P+    S+     P TP     K R A    SP+  SE D PPT + 
Sbjct: 13  IFNPPLSPGRKNAPKVTESSSVE---PHTPDAVLGKKRPASV--SPNDVSEHDHPPTQKP 72

Query: 73  RTDRADDGQKVELGEGGSTFSLYGLMVNMEHMAKMVRRADFDLRSDPVLACLVSAQTVMM 132
           +TD A+         G     L G + +M  M K V R +  L SDP+LAC VSAQT++M
Sbjct: 73  KTDNAEKASS----SGVPMKDLIGKVEDMLKMLKRVVRKNDKLVSDPLLACFVSAQTLLM 132

Query: 133 ACTADLISR 140
           ACTA+L+S+
Sbjct: 133 ACTAELLSK 132

BLAST of MC03g0898 vs. ExPASy TrEMBL
Match: A0A0A0LX14 (p55 OS=Cucumis sativus OX=3659 GN=Csa_1G059750 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.51e-12
Identity = 52/138 (37.68%), Postives = 81/138 (58.70%), Query Frame = 0

Query: 10  SRGLHSPPASPSKLDSPRQKYPSNNYRPVPVTPTIKTPKPRDAKRRRSPSSS----ERDQ 69
           + G+ +PP+SPSK ++P  K+P  +     V P  +TP P   K+R +P S     + D+
Sbjct: 8   AHGIFNPPSSPSKKNTP--KFPGRSS----VEP--QTPDPVHGKKRPAPVSPNDDFQHDR 67

Query: 70  PPTNRQRTDRADDGQKVELGEGGSTFSLYGLMVNMEHMAKMVRRADFD---LRSDPVLAC 129
           PPT +++TD A++G   ++        +  L+  +E M KM++R       L SDP+LAC
Sbjct: 68  PPTQKRKTDNAEEGSSSDV-------PMKDLIEKVEDMVKMLKRVGRKKDKLVSDPLLAC 127

Query: 130 LVSAQTVMMACTADLISR 140
            VSAQ ++ ACTA+LISR
Sbjct: 128 FVSAQALLTACTAELISR 130

BLAST of MC03g0898 vs. ExPASy TrEMBL
Match: A0A5D3BJN2 (p55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005530 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.47e-09
Identity = 50/129 (38.76%), Postives = 70/129 (54.26%), Query Frame = 0

Query: 13  LHSPPASPSKLDSPRQKYPSNNYRPVPVTPTIKTPKPRDAKRRRSPSS-SERDQPPTNRQ 72
           + +PP SP + ++P+    S+     P TP     K R A    SP+  SE D PPT + 
Sbjct: 13  IFNPPLSPGRKNAPKVTESSSVE---PHTPDAVLGKKRPASV--SPNDVSEHDHPPTQKP 72

Query: 73  RTDRADDGQKVELGEGGSTFSLYGLMVNMEHMAKMVRRADFDLRSDPVLACLVSAQTVMM 132
           +TD A+         G     L G + +M  M K V R +  L SDP+LAC VSAQT++M
Sbjct: 73  KTDNAEKASS----SGVPMKDLIGKVEDMLKMLKRVVRKNDKLVSDPLLACFVSAQTLLM 132

Query: 133 ACTADLISR 140
           ACTA+L+S+
Sbjct: 133 ACTAELLSK 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN64496.15.19e-1237.68hypothetical protein Csa_013860 [Cucumis sativus][more]
KAG6584107.15.22e-1041.13hypothetical protein SDJN03_20039, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0056836.11.54e-0838.76p55 [Cucumis melo var. makuwa] >TYJ99337.1 p55 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A0A0LX142.51e-1237.68p55 OS=Cucumis sativus OX=3659 GN=Csa_1G059750 PE=4 SV=1[more]
A0A5D3BJN27.47e-0938.76p55 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005530 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..40

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC03g0898.1MC03g0898.1mRNA