MC03g0734 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC03g0734
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Precursor of CEP14
Location	MC03: 14134222 .. 14134428 (-)
RNA-Seq Expression	MC03g0734
Synteny	MC03g0734

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTCCCTATTCTGCACCGCTCTCCCCAAAGCCACCACGCCGCCGCCGTCGTCTCCGAGCACAAGAGGCCACGCCGCCCTCAACGACCAGAAGCTCCTCCGTGCCCGCCGCCGCCGCCACCTCCTCCCCGCCGACGACCGTCCACATTATCATTATTATTATTACAATCGCATTCTCCGCTCCGTCCCCAGCCCCGGTGTCGGCCAT

mRNA sequence

AATTCCCTATTCTGCACCGCTCTCCCCAAAGCCACCACGCCGCCGCCGTCGTCTCCGAGCACAAGAGGCCACGCCGCCCTCAACGACCAGAAGCTCCTCCGTGCCCGCCGCCGCCGCCACCTCCTCCCCGCCGACGACCGTCCACATTATCATTATTATTATTACAATCGCATTCTCCGCTCCGTCCCCAGCCCCGGTGTCGGCCAT

Coding sequence (CDS)

AATTCCCTATTCTGCACCGCTCTCCCCAAAGCCACCACGCCGCCGCCGTCGTCTCCGAGCACAAGAGGCCACGCCGCCCTCAACGACCAGAAGCTCCTCCGTGCCCGCCGCCGCCGCCACCTCCTCCCCGCCGACGACCGTCCACATTATCATTATTATTATTACAATCGCATTCTCCGCTCCGTCCCCAGCCCCGGTGTCGGCCAT

Protein sequence

NSLFCTALPKATTPPPSSPSTRGHAALNDQKLLRARRRRHLLPADDRPHYHYYYYNRILRSVPSPGVGH

Homology

[Close]

BLAST of MC03g0734 vs. NCBI nr
Match: PLY74640.1 (hypothetical protein LSAT_7X25601 [Lactuca sativa])

HSP 1 Score: 58.5 bits (140), Expect = 3.30e-09
Identity = 35/68 (51.47%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 2  SLFCTALPKATTPPPSSPSTRGHAALNDQKLLRARRRRHLLPADDRPHYHYYYYNRILRS 61
          SL+ TALPK T P  S+PS +GHA+  D+KL+     RHL+  D           RILRS
Sbjct: 36 SLYLTALPKGTVPA-STPSKKGHASTTDEKLIT----RHLIAID-----------RILRS 87

Query: 62 VPSPGVGH 69
          VPSPGVGH
Sbjct: 96 VPSPGVGH 87

[Close]

BLAST of MC03g0734 vs. NCBI nr
Match: GFQ06984.1 (hypothetical protein PHJA_002842500 [Phtheirospermum japonicum])

HSP 1 Score: 58.2 bits (139), Expect = 5.94e-09
Identity = 36/69 (52.17%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 1  NSLFCTALPKATTPPPSSPSTRGHAALNDQKLLRARRRRHLLPADDRPHYHYYYYNRILR 60
          +SL+  ALPK T P  S+PS +GHAA  DQKL+     RHL   D           RILR
Sbjct: 45 DSLYMAALPKGTVPA-STPSKKGHAATTDQKLIA----RHLAAID-----------RILR 97

Query: 61 SVPSPGVGH 69
          SVPSPGVGH
Sbjct: 105 SVPSPGVGH 97

[Close]

BLAST of MC03g0734 vs. NCBI nr
Match: KAF7803270.1 (precursor of CEP14 [Senna tora])

HSP 1 Score: 58.2 bits (139), Expect = 6.08e-09
Identity = 35/69 (50.72%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 1  NSLFCTALPKATTPPPSSPSTRGHAALNDQKLLRARRRRHLLPADDRPHYHYYYYNRILR 60
          +SLF TALPK T P  S+PS +GHA + DQKL+     RHL+  D           R+LR
Sbjct: 46 DSLFLTALPKGTVPS-STPSRKGHAVVVDQKLIA----RHLIALD-----------RLLR 98

Query: 61 SVPSPGVGH 69
          SVPSPG GH
Sbjct: 106 SVPSPGAGH 98

[Close]

BLAST of MC03g0734 vs. NCBI nr
Match: XP_024993252.1 (precursor of CEP14-like [Cynara cardunculus var. scolymus] >KVH89450.1 hypothetical protein Ccrd_008558 [Cynara cardunculus var. scolymus])

HSP 1 Score: 57.8 bits (138), Expect = 7.84e-09
Identity = 34/68 (50.00%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 2  SLFCTALPKATTPPPSSPSTRGHAALNDQKLLRARRRRHLLPADDRPHYHYYYYNRILRS 61
          SL+ T+LPK T P  S+PS +GHA+  D+KL+     RHL+  D           RILRS
Sbjct: 43 SLYLTSLPKGTVPA-SAPSKKGHASTTDEKLIT----RHLITVD-----------RILRS 94

Query: 62 VPSPGVGH 69
          VPSPGVGH
Sbjct: 103 VPSPGVGH 94

[Close]

BLAST of MC03g0734 vs. NCBI nr
Match: PWA78221.1 (hypothetical protein CTI12_AA219340 [Artemisia annua])

HSP 1 Score: 57.0 bits (136), Expect = 1.57e-08
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 2  SLFCTALPKATTPPPSSPSTRGHAALNDQKLLRARRRRHLLPADDRPHYHYYYYNRILRS 61
          SL+ ++LPK T P  S+PS +GHA++ D+KL+     RHL+  D           RILRS
Sbjct: 43 SLYLSSLPKGTVPS-STPSKKGHASITDEKLIT----RHLIAID-----------RILRS 94

Query: 62 VPSPGVGH 69
          VPSPGVGH
Sbjct: 103 VPSPGVGH 94

[Close]

BLAST of MC03g0734 vs. ExPASy TrEMBL
Match: A0A2J6KHS4 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_7X25601 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.60e-09
Identity = 35/68 (51.47%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 2  SLFCTALPKATTPPPSSPSTRGHAALNDQKLLRARRRRHLLPADDRPHYHYYYYNRILRS 61
          SL+ TALPK T P  S+PS +GHA+  D+KL+     RHL+  D           RILRS
Sbjct: 36 SLYLTALPKGTVPA-STPSKKGHASTTDEKLIT----RHLIAID-----------RILRS 87

Query: 62 VPSPGVGH 69
          VPSPGVGH
Sbjct: 96 VPSPGVGH 87

[Close]

BLAST of MC03g0734 vs. ExPASy TrEMBL
Match: A0A103XEV0 (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_008558 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.80e-09
Identity = 34/68 (50.00%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 2  SLFCTALPKATTPPPSSPSTRGHAALNDQKLLRARRRRHLLPADDRPHYHYYYYNRILRS 61
          SL+ T+LPK T P  S+PS +GHA+  D+KL+     RHL+  D           RILRS
Sbjct: 43 SLYLTSLPKGTVPA-SAPSKKGHASTTDEKLIT----RHLITVD-----------RILRS 94

Query: 62 VPSPGVGH 69
          VPSPGVGH
Sbjct: 103 VPSPGVGH 94

[Close]

BLAST of MC03g0734 vs. ExPASy TrEMBL
Match: A0A2U1NXJ6 (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA219340 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.62e-09
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 2  SLFCTALPKATTPPPSSPSTRGHAALNDQKLLRARRRRHLLPADDRPHYHYYYYNRILRS 61
          SL+ ++LPK T P  S+PS +GHA++ D+KL+     RHL+  D           RILRS
Sbjct: 43 SLYLSSLPKGTVPS-STPSKKGHASITDEKLIT----RHLIAID-----------RILRS 94

Query: 62 VPSPGVGH 69
          VPSPGVGH
Sbjct: 103 VPSPGVGH 94

[Close]

BLAST of MC03g0734 vs. ExPASy TrEMBL
Match: A0A2U1LY30 (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA440470 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.62e-09
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 2  SLFCTALPKATTPPPSSPSTRGHAALNDQKLLRARRRRHLLPADDRPHYHYYYYNRILRS 61
          SL+ ++LPK T P  S+PS +GHA++ D+KL+     RHL+  D           RILRS
Sbjct: 43 SLYLSSLPKGTVPS-STPSKKGHASITDEKLIT----RHLIAID-----------RILRS 94

Query: 62 VPSPGVGH 69
          VPSPGVGH
Sbjct: 103 VPSPGVGH 94

[Close]

BLAST of MC03g0734 vs. ExPASy TrEMBL
Match: A0A0L9TKA5 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g043200 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.99e-09
Identity = 35/69 (50.72%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 1  NSLFCTALPKATTPPPSSPSTRGHAALNDQKLLRARRRRHLLPADDRPHYHYYYYNRILR 60
          +SLF +ALPK T PP SSPS +GHA   D+KL+     RHL+  D            +LR
Sbjct: 43 DSLFLSALPKGTVPP-SSPSKKGHATEVDEKLIS----RHLITID----------RVLLR 96

Query: 61 SVPSPGVGH 69
          SVPSPGVGH
Sbjct: 103 SVPSPGVGH 96

[Close]

BLAST of MC03g0734 vs. TAIR 10
Match: AT1G29290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.0e-04
Identity = 31/64 (48.44%), Postives = 35/64 (54.69%), Query Frame = 0


Query: 6   TALPKATTPPPSSPSTRGHAALNDQKLLRARRRRHLLPADDRPHYHYYYYNRILRSVPSP 65
           +ALPK    P S+PS +GHAA+   KL    R RHL   D           R LRSVPSP
Sbjct: 60  SALPKGKI-PNSTPSKKGHAAVFAGKL----RSRHLSTVD-----------RYLRSVPSP 107

Query: 66  GVGH 70
           GVGH
Sbjct: 120 GVGH 107

The following BLAST results are available for this feature:

BLAST of MC03g0734 vs.


Match Name	E-value	Identity	Description

BLAST of MC03g0734 vs. NCBI nr


Match Name	E-value	Identity	Description
PLY74640.1	3.30e-09	51.47	hypothetical protein LSAT_7X25601 [Lactuca sativa]	[more]
GFQ06984.1	5.94e-09	52.17	hypothetical protein PHJA_002842500 [Phtheirospermum japonicum]	[more]
KAF7803270.1	6.08e-09	50.72	precursor of CEP14 [Senna tora]	[more]
XP_024993252.1	7.84e-09	50.00	precursor of CEP14-like [Cynara cardunculus var. scolymus] >KVH89450.1 hypotheti...	[more]
PWA78221.1	1.57e-08	48.53	hypothetical protein CTI12_AA219340 [Artemisia annua]	[more]

BLAST of MC03g0734 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2J6KHS4	1.60e-09	51.47	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_7X25601 PE=4 SV=1	[more]
A0A103XEV0	3.80e-09	50.00	Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_008...	[more]
A0A2U1NXJ6	7.62e-09	48.53	Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA219340 PE=4 SV=1	[more]
A0A2U1LY30	7.62e-09	48.53	Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA440470 PE=4 SV=1	[more]
A0A0L9TKA5	7.99e-09	50.72	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g043200 PE...	[more]

BLAST of MC03g0734 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29290.1	1.0e-04	48.44	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC03g0734.1	MC03g0734.1	mRNA