MC03g0607 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC03g0607
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionzf-RVT domain-containing protein
LocationMC03: 12801587 .. 12801727 (+)
RNA-Seq ExpressionMC03g0607
SyntenyMC03g0607
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAATACTCCAGATAAACTTCAAAAGTGCCTCCCAAATGTCTACAACAGTCCCCATTGGTGCTGTCCTTGTAAATCAGCTTCGGAGTTTGTAGATCACCTTTTCTTCCACTGCCACTTTTGTGCAGGCCTATGGAACCAA

mRNA sequence

ATTAATACTCCAGATAAACTTCAAAAGTGCCTCCCAAATGTCTACAACAGTCCCCATTGGTGCTGTCCTTGTAAATCAGCTTCGGAGTTTGTAGATCACCTTTTCTTCCACTGCCACTTTTGTGCAGGCCTATGGAACCAA

Coding sequence (CDS)

ATTAATACTCCAGATAAACTTCAAAAGTGCCTCCCAAATGTCTACAACAGTCCCCATTGGTGCTGTCCTTGTAAATCAGCTTCGGAGTTTGTAGATCACCTTTTCTTCCACTGCCACTTTTGTGCAGGCCTATGGAACCAA

Protein sequence

INTPDKLQKCLPNVYNSPHWCCPCKSASEFVDHLFFHCHFCAGLWNQ
Homology
[Close]
BLAST of MC03g0607 vs. NCBI nr
Match: TYK29578.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.80e-07
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 1   INTPDKLQKCLPNVYNSPHWCCPCKSASEFVDHLFFHCHFCAGLWNQ 47
           INT D+LQK LPN   SP+WC  C  + E ++HLF HC +   LW++
Sbjct: 300 INTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWSK 346

[Close]
BLAST of MC03g0607 vs. NCBI nr
Match: KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.80e-07
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 1   INTPDKLQKCLPNVYNSPHWCCPCKSASEFVDHLFFHCHFCAGLWNQ 47
           INT D+LQK LPN   SP+WC  C  + E ++HLF HC +   LW++
Sbjct: 343 INTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWSK 389

[Close]
BLAST of MC03g0607 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.81e-07
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 1   INTPDKLQKCLPNVYNSPHWCCPCKSASEFVDHLFFHCHFCAGLWNQ 47
           INT D+LQK LPN   SP+WC  C  + E ++HLF HC +   LW++
Sbjct: 798 INTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSK 844

[Close]
BLAST of MC03g0607 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.81e-07
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 1   INTPDKLQKCLPNVYNSPHWCCPCKSASEFVDHLFFHCHFCAGLWNQ 47
           INT D+LQK LPN   SP+WC  C  + E ++HLF HC +   LW++
Sbjct: 892 INTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSK 938

[Close]
BLAST of MC03g0607 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.81e-07
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 1    INTPDKLQKCLPNVYNSPHWCCPCKSASEFVDHLFFHCHFCAGLWNQ 47
            INT D+LQK LPN   SP+WC  C  + E ++HLF HC +   LW++
Sbjct: 1000 INTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSK 1046

[Close]
BLAST of MC03g0607 vs. ExPASy TrEMBL
Match: A0A5D3E1E3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001840 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.73e-08
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 1   INTPDKLQKCLPNVYNSPHWCCPCKSASEFVDHLFFHCHFCAGLWNQ 47
           INT D+LQK LPN   SP+WC  C  + E ++HLF HC +   LW++
Sbjct: 300 INTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWSK 346

[Close]
BLAST of MC03g0607 vs. ExPASy TrEMBL
Match: A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.73e-08
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 1   INTPDKLQKCLPNVYNSPHWCCPCKSASEFVDHLFFHCHFCAGLWNQ 47
           INT D+LQK LPN   SP+WC  C  + E ++HLF HC +   LW++
Sbjct: 343 INTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLWSK 389

[Close]
BLAST of MC03g0607 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.74e-08
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 1   INTPDKLQKCLPNVYNSPHWCCPCKSASEFVDHLFFHCHFCAGLWNQ 47
           INT D+LQK LPN   SP+WC  C  + E ++HLF HC +   LW++
Sbjct: 798 INTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSK 844

[Close]
BLAST of MC03g0607 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.75e-08
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 1   INTPDKLQKCLPNVYNSPHWCCPCKSASEFVDHLFFHCHFCAGLWNQ 47
           INT D+LQK LPN   SP+WC  C  + E ++HLF HC +   LW++
Sbjct: 892 INTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSK 938

[Close]
BLAST of MC03g0607 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.75e-08
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 1    INTPDKLQKCLPNVYNSPHWCCPCKSASEFVDHLFFHCHFCAGLWNQ 47
            INT D+LQK LPN   SP+WC  C  + E ++HLF HC +   LW++
Sbjct: 1000 INTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSK 1046

The following BLAST results are available for this feature:
BLAST of MC03g0607 vs.
Match NameE-valueIdentityDescription
BLAST of MC03g0607 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK29578.11.80e-0748.94LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0044451.11.80e-0748.94LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0044556.11.81e-0748.94LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0041397.11.81e-0748.94LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0039950.11.81e-0748.94LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... [more]
BLAST of MC03g0607 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E1E38.73e-0848.94LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TSA78.73e-0848.94LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TR158.74e-0848.94LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TIB88.75e-0848.94LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7T9I78.75e-0848.94LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of MC03g0607 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC03g0607.1MC03g0607.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process
biological_process GO:0071704 organic substance metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0016866 intramolecular transferase activity