MC03g0560 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC03g0560
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionprotein PHLOEM PROTEIN 2-LIKE A9-like
LocationMC03: 12361436 .. 12361816 (-)
RNA-Seq ExpressionMC03g0560
SyntenyMC03g0560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGATAGTGTTGCAGAGCTGAAGCAAGTGGCATGGTTAGAAGTAACTGGCTCTACCCCTAAAGATGTTGTGATTGGCAAAGAATACAAAGTGGGTTTCAGAGTATCCCTAAGACCAGATGCCTTTGGATGGGAAGGGCGTGAAGTTTACATAATGGCCAAGATTGGGAAAAGAGGAACTGTCAGTTTCAAGAAGGTAAATTTTGAGGGGAAATCTCAAGGGATGCCCTTGCCCTTTGACATTCCTGAGGACAAATTGGTCATTACAGTCACTCCCAAAGAAACAGCAGTACCCTCTGATGATTGCAAGCTCTACTTTGGTATGTATGAAGTTTGGAGCAAGATGTGGAAGGGAGGGTTGAAGATCCATCATGCGTTCGTC

mRNA sequence

GAAGATAGTGTTGCAGAGCTGAAGCAAGTGGCATGGTTAGAAGTAACTGGCTCTACCCCTAAAGATGTTGTGATTGGCAAAGAATACAAAGTGGGTTTCAGAGTATCCCTAAGACCAGATGCCTTTGGATGGGAAGGGCGTGAAGTTTACATAATGGCCAAGATTGGGAAAAGAGGAACTGTCAGTTTCAAGAAGGTAAATTTTGAGGGGAAATCTCAAGGGATGCCCTTGCCCTTTGACATTCCTGAGGACAAATTGGTCATTACAGTCACTCCCAAAGAAACAGCAGTACCCTCTGATGATTGCAAGCTCTACTTTGGTATGTATGAAGTTTGGAGCAAGATGTGGAAGGGAGGGTTGAAGATCCATCATGCGTTCGTC

Coding sequence (CDS)

GAAGATAGTGTTGCAGAGCTGAAGCAAGTGGCATGGTTAGAAGTAACTGGCTCTACCCCTAAAGATGTTGTGATTGGCAAAGAATACAAAGTGGGTTTCAGAGTATCCCTAAGACCAGATGCCTTTGGATGGGAAGGGCGTGAAGTTTACATAATGGCCAAGATTGGGAAAAGAGGAACTGTCAGTTTCAAGAAGGTAAATTTTGAGGGGAAATCTCAAGGGATGCCCTTGCCCTTTGACATTCCTGAGGACAAATTGGTCATTACAGTCACTCCCAAAGAAACAGCAGTACCCTCTGATGATTGCAAGCTCTACTTTGGTATGTATGAAGTTTGGAGCAAGATGTGGAAGGGAGGGTTGAAGATCCATCATGCGTTCGTC

Protein sequence

EDSVAELKQVAWLEVTGSTPKDVVIGKEYKVGFRVSLRPDAFGWEGREVYIMAKIGKRGTVSFKKVNFEGKSQGMPLPFDIPEDKLVITVTPKETAVPSDDCKLYFGMYEVWSKMWKGGLKIHHAFV
Homology
BLAST of MC03g0560 vs. ExPASy Swiss-Prot
Match: Q9SA16 (Protein PHLOEM PROTEIN 2-LIKE A9 OS=Arabidopsis thaliana OX=3702 GN=PP2A9 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.0e-23
Identity = 62/131 (47.33%), Postives = 85/131 (64.89%), Query Frame = 0

Query: 5   AELKQVAWLEVTGSTPKDVVIGKEYKVGFRVSLRPDAFGWEGREVYIMAKIGKRGTVSFK 64
           AELK V+WLEVTGS  K +  GK Y++GF++S +PDA GW+   V++ AKIGK+G   +K
Sbjct: 52  AELKMVSWLEVTGSFDK-IEPGKTYRIGFKISFKPDATGWDKAPVFMSAKIGKKGKTVWK 111

Query: 65  KV-----NFEGKSQGMPLPFDIPEDK---LVITVTPKETAVPSDDCKLYFGMYEVWSKMW 124
           ++     NF G  +G   P +IP++      I V+P  TA+ + D KL FG+YEVW+  W
Sbjct: 112 RIKSVSQNF-GILKGGSEPVNIPDESDGLFEILVSP--TAL-NQDTKLQFGLYEVWTGRW 171

Query: 125 KGGLKIHHAFV 128
           K GL IH AFV
Sbjct: 172 KTGLLIHEAFV 177

BLAST of MC03g0560 vs. NCBI nr
Match: XP_022142574.1 (protein PHLOEM PROTEIN 2-LIKE A9-like isoform X2 [Momordica charantia])

HSP 1 Score: 265 bits (676), Expect = 3.71e-89
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0

Query: 1   EDSVAELKQVAWLEVTGSTPKDVVIGKEYKVGFRVSLRPDAFGWEGREVYIMAKIGKRGT 60
           EDSVAELKQVAWLEVTGSTPKDVVIGKEYKVGFRVSLRPDAFGWEGREVYIMAKIGKRGT
Sbjct: 8   EDSVAELKQVAWLEVTGSTPKDVVIGKEYKVGFRVSLRPDAFGWEGREVYIMAKIGKRGT 67

Query: 61  VSFKKVNFEGKSQGMPLPFDIPEDKLVITVTPKETAVPSDDCKLYFGMYEVWSKMWKGGL 120
           VSFKKVNFEGKSQGMPLPFDIPEDKLVITVTPKETAVPSDDCKLYFGMYEVWSKMWKGGL
Sbjct: 68  VSFKKVNFEGKSQGMPLPFDIPEDKLVITVTPKETAVPSDDCKLYFGMYEVWSKMWKGGL 127

Query: 121 KIHHAFV 127
           KIHHAFV
Sbjct: 128 KIHHAFV 134

BLAST of MC03g0560 vs. NCBI nr
Match: XP_022142573.1 (protein PHLOEM PROTEIN 2-LIKE A9-like isoform X1 [Momordica charantia])

HSP 1 Score: 265 bits (676), Expect = 1.77e-88
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0

Query: 1   EDSVAELKQVAWLEVTGSTPKDVVIGKEYKVGFRVSLRPDAFGWEGREVYIMAKIGKRGT 60
           EDSVAELKQVAWLEVTGSTPKDVVIGKEYKVGFRVSLRPDAFGWEGREVYIMAKIGKRGT
Sbjct: 54  EDSVAELKQVAWLEVTGSTPKDVVIGKEYKVGFRVSLRPDAFGWEGREVYIMAKIGKRGT 113

Query: 61  VSFKKVNFEGKSQGMPLPFDIPEDKLVITVTPKETAVPSDDCKLYFGMYEVWSKMWKGGL 120
           VSFKKVNFEGKSQGMPLPFDIPEDKLVITVTPKETAVPSDDCKLYFGMYEVWSKMWKGGL
Sbjct: 114 VSFKKVNFEGKSQGMPLPFDIPEDKLVITVTPKETAVPSDDCKLYFGMYEVWSKMWKGGL 173

Query: 121 KIHHAFV 127
           KIHHAFV
Sbjct: 174 KIHHAFV 180

BLAST of MC03g0560 vs. NCBI nr
Match: XP_038896030.1 (protein PHLOEM PROTEIN 2-LIKE A9-like [Benincasa hispida])

HSP 1 Score: 152 bits (384), Expect = 3.59e-44
Identity = 76/127 (59.84%), Postives = 92/127 (72.44%), Query Frame = 0

Query: 1   EDSVAELKQVAWLEVTGSTPKDVVIGKEYKVGFRVSLRPDAFGWEGREVYIMAKIGKRGT 60
           EDS AELKQV WLEVTGST KDV++ ++YKVGF +SLRPDAFGW+   VYIMAKIG+RG 
Sbjct: 49  EDSFAELKQVCWLEVTGSTEKDVLVEEKYKVGFVISLRPDAFGWDDCSVYIMAKIGRRGN 108

Query: 61  VSFKKVNFEGKSQGMPLPFDIPEDKLVITVTPKETAVPSDDCKLYFGMYEVWSKMWKGGL 120
            SFKK++      G  +   IP+D  +I   P      +DD KLYFG+YEVW+  WKGGL
Sbjct: 109 YSFKKMSLAALPTGKRI--TIPDDDQLIIQVPAFKP-DNDDLKLYFGLYEVWTNRWKGGL 168

Query: 121 KIHHAFV 127
           +IHHAFV
Sbjct: 169 RIHHAFV 172

BLAST of MC03g0560 vs. NCBI nr
Match: XP_022994899.1 (protein PHLOEM PROTEIN 2-LIKE A9-like [Cucurbita maxima])

HSP 1 Score: 145 bits (365), Expect = 3.57e-41
Identity = 78/129 (60.47%), Postives = 94/129 (72.87%), Query Frame = 0

Query: 1   EDSVAELKQVAWLEVTGSTPKDVVIGKEYKVGFRVSLRPDAFGWEGREVYIMAKIGKRGT 60
           EDS AELKQV WLEVTGSTPK++ IG  +KV F V+LRP+AFGW+   VYIMAKIGK+G 
Sbjct: 51  EDSFAELKQVNWLEVTGSTPKNLKIGAWFKVSFNVTLRPNAFGWDECNVYIMAKIGKKGH 110

Query: 61  VSFKKVNFEGKS-QGMPLPFDIPEDKLVITVT-PKETAVPSDDCKLYFGMYEVWSKMWKG 120
            SFKK+N   K  +G    F+IP ++L I V  PK  +   +D KLYFGMYEVWS  WKG
Sbjct: 111 YSFKKLNLNVKQPEGR---FNIPHNELKIKVAKPKNGS--EEDLKLYFGMYEVWSNRWKG 170

Query: 121 GLKIHHAFV 127
           GL+I+HA V
Sbjct: 171 GLRIYHALV 174

BLAST of MC03g0560 vs. NCBI nr
Match: XP_022954490.1 (protein PHLOEM PROTEIN 2-LIKE A9-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 145 bits (365), Expect = 4.02e-41
Identity = 74/127 (58.27%), Postives = 91/127 (71.65%), Query Frame = 0

Query: 1   EDSVAELKQVAWLEVTGSTPKDVVIGKEYKVGFRVSLRPDAFGWEGREVYIMAKIGKRGT 60
           EDS AELKQV WLEVTGST + V +GK +KV F V+LRP+AFGW+   +YIMAKIGK+G 
Sbjct: 58  EDSFAELKQVNWLEVTGSTSEKVEVGKWFKVSFNVTLRPNAFGWDESNIYIMAKIGKKGR 117

Query: 61  VSFKKVNFEGKSQGMPLPFDIPEDKLVITVTPKETAVPSDDCKLYFGMYEVWSKMWKGGL 120
            SFKK+N   K+      F+IP+++L I     E A  ++D  LYFGMYEVWS  WKGGL
Sbjct: 118 FSFKKLNLRNKNPDER--FNIPQNELKI-----EVAKSAEDPILYFGMYEVWSNRWKGGL 177

Query: 121 KIHHAFV 127
           +IHHA V
Sbjct: 178 RIHHALV 177

BLAST of MC03g0560 vs. ExPASy TrEMBL
Match: A0A6J1CLV7 (protein PHLOEM PROTEIN 2-LIKE A9-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111012653 PE=4 SV=1)

HSP 1 Score: 265 bits (676), Expect = 1.80e-89
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0

Query: 1   EDSVAELKQVAWLEVTGSTPKDVVIGKEYKVGFRVSLRPDAFGWEGREVYIMAKIGKRGT 60
           EDSVAELKQVAWLEVTGSTPKDVVIGKEYKVGFRVSLRPDAFGWEGREVYIMAKIGKRGT
Sbjct: 8   EDSVAELKQVAWLEVTGSTPKDVVIGKEYKVGFRVSLRPDAFGWEGREVYIMAKIGKRGT 67

Query: 61  VSFKKVNFEGKSQGMPLPFDIPEDKLVITVTPKETAVPSDDCKLYFGMYEVWSKMWKGGL 120
           VSFKKVNFEGKSQGMPLPFDIPEDKLVITVTPKETAVPSDDCKLYFGMYEVWSKMWKGGL
Sbjct: 68  VSFKKVNFEGKSQGMPLPFDIPEDKLVITVTPKETAVPSDDCKLYFGMYEVWSKMWKGGL 127

Query: 121 KIHHAFV 127
           KIHHAFV
Sbjct: 128 KIHHAFV 134

BLAST of MC03g0560 vs. ExPASy TrEMBL
Match: A0A6J1CNK5 (protein PHLOEM PROTEIN 2-LIKE A9-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012653 PE=4 SV=1)

HSP 1 Score: 265 bits (676), Expect = 8.56e-89
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0

Query: 1   EDSVAELKQVAWLEVTGSTPKDVVIGKEYKVGFRVSLRPDAFGWEGREVYIMAKIGKRGT 60
           EDSVAELKQVAWLEVTGSTPKDVVIGKEYKVGFRVSLRPDAFGWEGREVYIMAKIGKRGT
Sbjct: 54  EDSVAELKQVAWLEVTGSTPKDVVIGKEYKVGFRVSLRPDAFGWEGREVYIMAKIGKRGT 113

Query: 61  VSFKKVNFEGKSQGMPLPFDIPEDKLVITVTPKETAVPSDDCKLYFGMYEVWSKMWKGGL 120
           VSFKKVNFEGKSQGMPLPFDIPEDKLVITVTPKETAVPSDDCKLYFGMYEVWSKMWKGGL
Sbjct: 114 VSFKKVNFEGKSQGMPLPFDIPEDKLVITVTPKETAVPSDDCKLYFGMYEVWSKMWKGGL 173

Query: 121 KIHHAFV 127
           KIHHAFV
Sbjct: 174 KIHHAFV 180

BLAST of MC03g0560 vs. ExPASy TrEMBL
Match: A0A6J1K456 (protein PHLOEM PROTEIN 2-LIKE A9-like OS=Cucurbita maxima OX=3661 GN=LOC111490487 PE=4 SV=1)

HSP 1 Score: 145 bits (365), Expect = 1.73e-41
Identity = 78/129 (60.47%), Postives = 94/129 (72.87%), Query Frame = 0

Query: 1   EDSVAELKQVAWLEVTGSTPKDVVIGKEYKVGFRVSLRPDAFGWEGREVYIMAKIGKRGT 60
           EDS AELKQV WLEVTGSTPK++ IG  +KV F V+LRP+AFGW+   VYIMAKIGK+G 
Sbjct: 51  EDSFAELKQVNWLEVTGSTPKNLKIGAWFKVSFNVTLRPNAFGWDECNVYIMAKIGKKGH 110

Query: 61  VSFKKVNFEGKS-QGMPLPFDIPEDKLVITVT-PKETAVPSDDCKLYFGMYEVWSKMWKG 120
            SFKK+N   K  +G    F+IP ++L I V  PK  +   +D KLYFGMYEVWS  WKG
Sbjct: 111 YSFKKLNLNVKQPEGR---FNIPHNELKIKVAKPKNGS--EEDLKLYFGMYEVWSNRWKG 170

Query: 121 GLKIHHAFV 127
           GL+I+HA V
Sbjct: 171 GLRIYHALV 174

BLAST of MC03g0560 vs. ExPASy TrEMBL
Match: A0A6J1GSJ8 (protein PHLOEM PROTEIN 2-LIKE A9-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456742 PE=4 SV=1)

HSP 1 Score: 145 bits (365), Expect = 1.94e-41
Identity = 74/127 (58.27%), Postives = 91/127 (71.65%), Query Frame = 0

Query: 1   EDSVAELKQVAWLEVTGSTPKDVVIGKEYKVGFRVSLRPDAFGWEGREVYIMAKIGKRGT 60
           EDS AELKQV WLEVTGST + V +GK +KV F V+LRP+AFGW+   +YIMAKIGK+G 
Sbjct: 58  EDSFAELKQVNWLEVTGSTSEKVEVGKWFKVSFNVTLRPNAFGWDESNIYIMAKIGKKGR 117

Query: 61  VSFKKVNFEGKSQGMPLPFDIPEDKLVITVTPKETAVPSDDCKLYFGMYEVWSKMWKGGL 120
            SFKK+N   K+      F+IP+++L I     E A  ++D  LYFGMYEVWS  WKGGL
Sbjct: 118 FSFKKLNLRNKNPDER--FNIPQNELKI-----EVAKSAEDPILYFGMYEVWSNRWKGGL 177

Query: 121 KIHHAFV 127
           +IHHA V
Sbjct: 178 RIHHALV 177

BLAST of MC03g0560 vs. ExPASy TrEMBL
Match: A0A6J1GT48 (protein PHLOEM PROTEIN 2-LIKE A9-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456742 PE=4 SV=1)

HSP 1 Score: 145 bits (365), Expect = 2.06e-41
Identity = 74/127 (58.27%), Postives = 91/127 (71.65%), Query Frame = 0

Query: 1   EDSVAELKQVAWLEVTGSTPKDVVIGKEYKVGFRVSLRPDAFGWEGREVYIMAKIGKRGT 60
           EDS AELKQV WLEVTGST + V +GK +KV F V+LRP+AFGW+   +YIMAKIGK+G 
Sbjct: 60  EDSFAELKQVNWLEVTGSTSEKVEVGKWFKVSFNVTLRPNAFGWDESNIYIMAKIGKKGR 119

Query: 61  VSFKKVNFEGKSQGMPLPFDIPEDKLVITVTPKETAVPSDDCKLYFGMYEVWSKMWKGGL 120
            SFKK+N   K+      F+IP+++L I     E A  ++D  LYFGMYEVWS  WKGGL
Sbjct: 120 FSFKKLNLRNKNPDER--FNIPQNELKI-----EVAKSAEDPILYFGMYEVWSNRWKGGL 179

Query: 121 KIHHAFV 127
           +IHHA V
Sbjct: 180 RIHHALV 179

BLAST of MC03g0560 vs. TAIR 10
Match: AT1G31200.1 (phloem protein 2-A9 )

HSP 1 Score: 109.0 bits (271), Expect = 2.8e-24
Identity = 62/131 (47.33%), Postives = 85/131 (64.89%), Query Frame = 0

Query: 5   AELKQVAWLEVTGSTPKDVVIGKEYKVGFRVSLRPDAFGWEGREVYIMAKIGKRGTVSFK 64
           AELK V+WLEVTGS  K +  GK Y++GF++S +PDA GW+   V++ AKIGK+G   +K
Sbjct: 52  AELKMVSWLEVTGSFDK-IEPGKTYRIGFKISFKPDATGWDKAPVFMSAKIGKKGKTVWK 111

Query: 65  KV-----NFEGKSQGMPLPFDIPEDK---LVITVTPKETAVPSDDCKLYFGMYEVWSKMW 124
           ++     NF G  +G   P +IP++      I V+P  TA+ + D KL FG+YEVW+  W
Sbjct: 112 RIKSVSQNF-GILKGGSEPVNIPDESDGLFEILVSP--TAL-NQDTKLQFGLYEVWTGRW 171

Query: 125 KGGLKIHHAFV 128
           K GL IH AFV
Sbjct: 172 KTGLLIHEAFV 177

BLAST of MC03g0560 vs. TAIR 10
Match: AT1G10155.1 (phloem protein 2-A10 )

HSP 1 Score: 105.9 bits (263), Expect = 2.4e-23
Identity = 59/131 (45.04%), Postives = 84/131 (64.12%), Query Frame = 0

Query: 5   AELKQVAWLEVTGSTPKDVVIGKEYKVGFRVSLRPDAFGWEGREVYIMAKIGKRGTVSFK 64
           AELK+V+WLEVTGS  K +  GK Y++GF++S   DA GW+   V++ AKIGK+G   +K
Sbjct: 55  AELKKVSWLEVTGSYDK-IEPGKTYRIGFKISFTADATGWDQAPVFMSAKIGKKGRTIWK 114

Query: 65  KV-----NFEGKSQGMPLPFDIPED---KLVITVTPKETAVPSDDCKLYFGMYEVWSKMW 124
           ++     NF+ K +G   P +IP++   +  I V+PK     + D KL FG+YEVW+  W
Sbjct: 115 RIKSVNNNFD-KLKGGTGPVNIPDETDGRFEIFVSPK--VAINQDTKLQFGLYEVWTGKW 174

Query: 125 KGGLKIHHAFV 128
           K GL I+ AFV
Sbjct: 175 KTGLLIYEAFV 181

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SA164.0e-2347.33Protein PHLOEM PROTEIN 2-LIKE A9 OS=Arabidopsis thaliana OX=3702 GN=PP2A9 PE=2 S... [more]
Match NameE-valueIdentityDescription
XP_022142574.13.71e-89100.00protein PHLOEM PROTEIN 2-LIKE A9-like isoform X2 [Momordica charantia][more]
XP_022142573.11.77e-88100.00protein PHLOEM PROTEIN 2-LIKE A9-like isoform X1 [Momordica charantia][more]
XP_038896030.13.59e-4459.84protein PHLOEM PROTEIN 2-LIKE A9-like [Benincasa hispida][more]
XP_022994899.13.57e-4160.47protein PHLOEM PROTEIN 2-LIKE A9-like [Cucurbita maxima][more]
XP_022954490.14.02e-4158.27protein PHLOEM PROTEIN 2-LIKE A9-like isoform X2 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
A0A6J1CLV71.80e-89100.00protein PHLOEM PROTEIN 2-LIKE A9-like isoform X2 OS=Momordica charantia OX=3673 ... [more]
A0A6J1CNK58.56e-89100.00protein PHLOEM PROTEIN 2-LIKE A9-like isoform X1 OS=Momordica charantia OX=3673 ... [more]
A0A6J1K4561.73e-4160.47protein PHLOEM PROTEIN 2-LIKE A9-like OS=Cucurbita maxima OX=3661 GN=LOC11149048... [more]
A0A6J1GSJ81.94e-4158.27protein PHLOEM PROTEIN 2-LIKE A9-like isoform X2 OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1GT482.06e-4158.27protein PHLOEM PROTEIN 2-LIKE A9-like isoform X1 OS=Cucurbita moschata OX=3662 G... [more]
Match NameE-valueIdentityDescription
AT1G31200.12.8e-2447.33phloem protein 2-A9 [more]
AT1G10155.12.4e-2345.04phloem protein 2-A10 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025886Phloem protein 2-likePFAMPF14299PP2coord: 3..124
e-value: 1.5E-15
score: 57.5
NoneNo IPR availablePANTHERPTHR32278:SF2PROTEIN PHLOEM PROTEIN 2-LIKE A9coord: 3..127
NoneNo IPR availablePANTHERPTHR32278FAMILY NOT NAMEDcoord: 3..127

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC03g0560.1MC03g0560.1mRNA