MC03g0436 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC03g0436
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	50S ribosomal protein L2, chloroplastic
Location	MC03: 11229614 .. 11229853 (-)
RNA-Seq Expression	MC03g0436
Synteny	MC03g0436

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGCTAGAGCAGCAGGTGTTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGAGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGG

mRNA sequence

TTAGCTAGAGCAGCAGGTGTTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGAGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGG

Coding sequence (CDS)

TTAGCTAGAGCAGCAGGTGTTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGAGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGG

Protein sequence

LARAAGVVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVENAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHG

Homology

[Close]

BLAST of MC03g0436 vs. ExPASy Swiss-Prot
Match: Q14F95 (50S ribosomal protein L2-A, chloroplastic OS=Populus alba OX=43335 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.0e-37
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 1   LARAAGVVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVENAGVNQKSLGRAGSKCW 60
           LARAAG VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQV NAGVNQKSLGRAGSKCW
Sbjct: 153 LARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCW 212

Query: 61  LGKRPVVRGVVMNPVDHPHG 81
           LGKRPVVRGVVMNPVDHPHG
Sbjct: 213 LGKRPVVRGVVMNPVDHPHG 232

[Close]

BLAST of MC03g0436 vs. ExPASy Swiss-Prot
Match: Q14FB6 (50S ribosomal protein L2-B, chloroplastic OS=Populus alba OX=43335 GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.0e-37
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 1   LARAAGVVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVENAGVNQKSLGRAGSKCW 60
           LARAAG VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQV NAGVNQKSLGRAGSKCW
Sbjct: 152 LARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCW 211

Query: 61  LGKRPVVRGVVMNPVDHPHG 81
           LGKRPVVRGVVMNPVDHPHG
Sbjct: 212 LGKRPVVRGVVMNPVDHPHG 231

[Close]

BLAST of MC03g0436 vs. ExPASy Swiss-Prot
Match: Q4VZK5 (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.0e-37
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 1   LARAAGVVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVENAGVNQKSLGRAGSKCW 60
           LARAAG VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQV NAGVNQKSLGRAGSKCW
Sbjct: 152 LARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCW 211

Query: 61  LGKRPVVRGVVMNPVDHPHG 81
           LGKRPVVRGVVMNPVDHPHG
Sbjct: 212 LGKRPVVRGVVMNPVDHPHG 231

[Close]

BLAST of MC03g0436 vs. ExPASy Swiss-Prot
Match: A4GYV2 (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa OX=3694 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.0e-37
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 1   LARAAGVVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVENAGVNQKSLGRAGSKCW 60
           LARAAG VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQV NAGVNQKSLGRAGSKCW
Sbjct: 152 LARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCW 211

Query: 61  LGKRPVVRGVVMNPVDHPHG 81
           LGKRPVVRGVVMNPVDHPHG
Sbjct: 212 LGKRPVVRGVVMNPVDHPHG 231

[Close]

BLAST of MC03g0436 vs. ExPASy Swiss-Prot
Match: A4QK59 (50S ribosomal protein L2, chloroplastic OS=Arabis hirsuta OX=78191 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.2e-36
Identity = 77/80 (96.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1   LARAAGVVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVENAGVNQKSLGRAGSKCW 60
           LARAAG VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQV N GVNQKSLGRAGSKCW
Sbjct: 152 LARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCW 211

Query: 61  LGKRPVVRGVVMNPVDHPHG 81
           LGKRPVVRGVVMNPVDHPHG
Sbjct: 212 LGKRPVVRGVVMNPVDHPHG 231

[Close]

BLAST of MC03g0436 vs. NCBI nr
Match: ABK96157.1 (unknown [Populus trichocarpa] >RQO99414.1 hypothetical protein POPTR_013G138584 [Populus trichocarpa])

HSP 1 Score: 154 bits (389), Expect = 3.29e-46
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 1  LARAAGVVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVENAGVNQKSLGRAGSKCW 60
          LARAAG VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQV NAGVNQKSLGRAGSKCW
Sbjct: 20 LARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCW 79

Query: 61 LGKRPVVRGVVMNPVDHPHG 80
          LGKRPVVRGVVMNPVDHPHG
Sbjct: 80 LGKRPVVRGVVMNPVDHPHG 99

[Close]

BLAST of MC03g0436 vs. NCBI nr
Match: TYK08770.1 (ribosomal protein L2 [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (389), Expect = 3.29e-46
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 1  LARAAGVVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVENAGVNQKSLGRAGSKCW 60
          LARAAG VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQV NAGVNQKSLGRAGSKCW
Sbjct: 20 LARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCW 79

Query: 61 LGKRPVVRGVVMNPVDHPHG 80
          LGKRPVVRGVVMNPVDHPHG
Sbjct: 80 LGKRPVVRGVVMNPVDHPHG 99

[Close]

BLAST of MC03g0436 vs. NCBI nr
Match: ACY07935.1 (ribosomal protein L2, partial [Cynomorium songaricum])

HSP 1 Score: 154 bits (389), Expect = 3.50e-46
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 1   LARAAGVVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVENAGVNQKSLGRAGSKCW 60
           LARAAG VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQV NAGVNQKSLGRAGSKCW
Sbjct: 22  LARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCW 81

Query: 61  LGKRPVVRGVVMNPVDHPHG 80
           LGKRPVVRGVVMNPVDHPHG
Sbjct: 82  LGKRPVVRGVVMNPVDHPHG 101

[Close]

BLAST of MC03g0436 vs. NCBI nr
Match: OMP12525.1 (Ribosomal protein L2 [Corchorus olitorius])

HSP 1 Score: 152 bits (385), Expect = 3.75e-46
Identity = 77/80 (96.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  LARAAGVVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVENAGVNQKSLGRAGSKCW 60
          LARAAG VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQV N GVNQKSLGRAGSKCW
Sbjct: 20 LARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCW 79

Query: 61 LGKRPVVRGVVMNPVDHPHG 80
          LGKRPVVRGVVMNPVDHPHG
Sbjct: 80 LGKRPVVRGVVMNPVDHPHG 99

[Close]

BLAST of MC03g0436 vs. NCBI nr
Match: CAA7013030.1 (unnamed protein product, partial [Microthlaspi erraticum] >CAA7013915.1 unnamed protein product, partial [Microthlaspi erraticum])

HSP 1 Score: 152 bits (385), Expect = 4.51e-46
Identity = 77/80 (96.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  LARAAGVVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVENAGVNQKSLGRAGSKCW 60
          LARAAG VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQV N GVNQKSLGRAGSKCW
Sbjct: 20 LARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCW 79

Query: 61 LGKRPVVRGVVMNPVDHPHG 80
          LGKRPVVRGVVMNPVDHPHG
Sbjct: 80 LGKRPVVRGVVMNPVDHPHG 99

[Close]

BLAST of MC03g0436 vs. ExPASy TrEMBL
Match: A9PIF4 (Ribosomal_L2_C domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_013G138584 PE=2 SV=1)

HSP 1 Score: 154 bits (389), Expect = 1.59e-46
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 1  LARAAGVVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVENAGVNQKSLGRAGSKCW 60
          LARAAG VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQV NAGVNQKSLGRAGSKCW
Sbjct: 20 LARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCW 79

Query: 61 LGKRPVVRGVVMNPVDHPHG 80
          LGKRPVVRGVVMNPVDHPHG
Sbjct: 80 LGKRPVVRGVVMNPVDHPHG 99

[Close]

BLAST of MC03g0436 vs. ExPASy TrEMBL
Match: A0A5D3CBP8 (Ribosomal protein L2 (Chloroplast) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold534G00210 PE=3 SV=1)

HSP 1 Score: 154 bits (389), Expect = 1.59e-46
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 1  LARAAGVVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVENAGVNQKSLGRAGSKCW 60
          LARAAG VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQV NAGVNQKSLGRAGSKCW
Sbjct: 20 LARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCW 79

Query: 61 LGKRPVVRGVVMNPVDHPHG 80
          LGKRPVVRGVVMNPVDHPHG
Sbjct: 80 LGKRPVVRGVVMNPVDHPHG 99

[Close]

BLAST of MC03g0436 vs. ExPASy TrEMBL
Match: D0QXH7 (Ribosomal protein L2 (Fragment) OS=Cynomorium songaricum OX=627609 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 154 bits (389), Expect = 1.69e-46
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 1   LARAAGVVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVENAGVNQKSLGRAGSKCW 60
           LARAAG VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQV NAGVNQKSLGRAGSKCW
Sbjct: 22  LARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCW 81

Query: 61  LGKRPVVRGVVMNPVDHPHG 80
           LGKRPVVRGVVMNPVDHPHG
Sbjct: 82  LGKRPVVRGVVMNPVDHPHG 101

[Close]

BLAST of MC03g0436 vs. ExPASy TrEMBL
Match: A0A1R3KZK2 (Ribosomal protein L2 OS=Corchorus olitorius OX=93759 GN=COLO4_03075 PE=4 SV=1)

HSP 1 Score: 152 bits (385), Expect = 1.82e-46
Identity = 77/80 (96.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  LARAAGVVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVENAGVNQKSLGRAGSKCW 60
          LARAAG VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQV N GVNQKSLGRAGSKCW
Sbjct: 20 LARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCW 79

Query: 61 LGKRPVVRGVVMNPVDHPHG 80
          LGKRPVVRGVVMNPVDHPHG
Sbjct: 80 LGKRPVVRGVVMNPVDHPHG 99

[Close]

BLAST of MC03g0436 vs. ExPASy TrEMBL
Match: A0A6D2HFA4 (Ribosomal_L2_C domain-containing protein (Fragment) OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS1149 PE=4 SV=1)

HSP 1 Score: 152 bits (385), Expect = 2.18e-46
Identity = 77/80 (96.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  LARAAGVVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVENAGVNQKSLGRAGSKCW 60
          LARAAG VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQV N GVNQKSLGRAGSKCW
Sbjct: 20 LARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCW 79

Query: 61 LGKRPVVRGVVMNPVDHPHG 80
          LGKRPVVRGVVMNPVDHPHG
Sbjct: 80 LGKRPVVRGVVMNPVDHPHG 99

[Close]

BLAST of MC03g0436 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 153.3 bits (386), Expect = 8.3e-38
Identity = 77/80 (96.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1   LARAAGVVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVENAGVNQKSLGRAGSKCW 60
           LARAAG VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQV N GVNQKSLGRAGSKCW
Sbjct: 152 LARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCW 211

Query: 61  LGKRPVVRGVVMNPVDHPHG 81
           LGKRPVVRGVVMNPVDHPHG
Sbjct: 212 LGKRPVVRGVVMNPVDHPHG 231

[Close]

BLAST of MC03g0436 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 153.3 bits (386), Expect = 8.3e-38
Identity = 77/80 (96.25%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1   LARAAGVVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVENAGVNQKSLGRAGSKCW 60
           LARAAG VAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQV N GVNQKSLGRAGSKCW
Sbjct: 152 LARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCW 211

Query: 61  LGKRPVVRGVVMNPVDHPHG 81
           LGKRPVVRGVVMNPVDHPHG
Sbjct: 212 LGKRPVVRGVVMNPVDHPHG 231

[Close]

BLAST of MC03g0436 vs. TAIR 10
Match: AT2G44065.1 (Ribosomal protein L2 family )

HSP 1 Score: 79.3 bits (194), Expect = 1.5e-15
Identity = 41/81 (50.62%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 1   LARAAGVVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVGQVENAGVNQKSLGRAGSKC 60
           + RAAG  AK++ +  K   L KLPSG+ + I+  C AT+G V N     K L +AG   
Sbjct: 87  MVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIGTVSNPSHGTKKLYKAGQSR 146

Query: 61  WLGKRPVVRGVVMNPVDHPHG 81
           WLG RP VRGV MNP DHPHG
Sbjct: 147 WLGIRPKVRGVAMNPCDHPHG 167

[Close]

BLAST of MC03g0436 vs. TAIR 10
Match: AT2G44065.2 (Ribosomal protein L2 family )

HSP 1 Score: 79.3 bits (194), Expect = 1.5e-15
Identity = 41/81 (50.62%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 1   LARAAGVVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVGQVENAGVNQKSLGRAGSKC 60
           + RAAG  AK++ +  K   L KLPSG+ + I+  C AT+G V N     K L +AG   
Sbjct: 87  MVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIGTVSNPSHGTKKLYKAGQSR 146

Query: 61  WLGKRPVVRGVVMNPVDHPHG 81
           WLG RP VRGV MNP DHPHG
Sbjct: 147 WLGIRPKVRGVAMNPCDHPHG 167

[Close]

BLAST of MC03g0436 vs. TAIR 10
Match: AT3G51190.1 (Ribosomal protein L2 family )

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-11
Identity = 41/91 (45.05%), Postives = 53/91 (58.24%), Query Frame = 0


Query: 1   LARAAGVVAKLIAKEGKSAT--LKLPSGEVRLISKNCSATVGQVENAGVNQKSLGRAGS- 60
           LARA+G  A +IA   +S T  +KLPSG  +++   C A +GQV   G  +K L +AG+ 
Sbjct: 127 LARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPLLKAGNA 186

Query: 61  --------KCWLGKRPVVRGVVMNPVDHPHG 81
                    CW    PVVRGV MNPV+HPHG
Sbjct: 187 YHKYKAKRNCW----PVVRGVAMNPVEHPHG 213

The following BLAST results are available for this feature:

BLAST of MC03g0436 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q14F95	4.0e-37	97.50	50S ribosomal protein L2-A, chloroplastic OS=Populus alba OX=43335 GN=rpl2-A PE=...	[more]
Q14FB6	4.0e-37	97.50	50S ribosomal protein L2-B, chloroplastic OS=Populus alba OX=43335 GN=rpl2-B PE=...	[more]
Q4VZK5	4.0e-37	97.50	50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=...	[more]
A4GYV2	4.0e-37	97.50	50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa OX=3694 GN=rpl2-A...	[more]
A4QK59	1.2e-36	96.25	50S ribosomal protein L2, chloroplastic OS=Arabis hirsuta OX=78191 GN=rpl2-A PE=...	[more]

BLAST of MC03g0436 vs. NCBI nr


Match Name	E-value	Identity	Description
ABK96157.1	3.29e-46	97.50	unknown [Populus trichocarpa] >RQO99414.1 hypothetical protein POPTR_013G138584 ...	[more]
TYK08770.1	3.29e-46	97.50	ribosomal protein L2 [Cucumis melo var. makuwa]	[more]
ACY07935.1	3.50e-46	97.50	ribosomal protein L2, partial [Cynomorium songaricum]	[more]
OMP12525.1	3.75e-46	96.25	Ribosomal protein L2 [Corchorus olitorius]	[more]
CAA7013030.1	4.51e-46	96.25	unnamed protein product, partial [Microthlaspi erraticum] >CAA7013915.1 unnamed ...	[more]

BLAST of MC03g0436 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A9PIF4	1.59e-46	97.50	Ribosomal_L2_C domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR...	[more]
A0A5D3CBP8	1.59e-46	97.50	Ribosomal protein L2 (Chloroplast) OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
D0QXH7	1.69e-46	97.50	Ribosomal protein L2 (Fragment) OS=Cynomorium songaricum OX=627609 GN=rpl2 PE=3 ...	[more]
A0A1R3KZK2	1.82e-46	96.25	Ribosomal protein L2 OS=Corchorus olitorius OX=93759 GN=COLO4_03075 PE=4 SV=1	[more]
A0A6D2HFA4	2.18e-46	96.25	Ribosomal_L2_C domain-containing protein (Fragment) OS=Microthlaspi erraticum OX...	[more]

BLAST of MC03g0436 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00830.1	8.3e-38	96.25	ribosomal protein L2	[more]
ATCG01310.1	8.3e-38	96.25	ribosomal protein L2	[more]
AT2G44065.1	1.5e-15	50.62	Ribosomal protein L2 family	[more]
AT2G44065.2	1.5e-15	50.62	Ribosomal protein L2 family	[more]
AT3G51190.1	1.0e-11	45.05	Ribosomal protein L2 family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022669	Ribosomal protein L2, C-terminal	SMART	SM01382	Ribosomal_L2_C_2	coord: 1..80 e-value: 9.2E-23 score: 91.6
IPR022669	Ribosomal protein L2, C-terminal	PFAM	PF03947	Ribosomal_L2_C	coord: 1..80 e-value: 2.4E-32 score: 111.7
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 1..43 e-value: 2.0E-17 score: 64.9
IPR014726	Ribosomal protein L2, domain 3	GENE3D	4.10.950.10	Ribosomal protein L2, domain 3	coord: 44..80 e-value: 7.7E-17 score: 63.2
None	No IPR available	PANTHER	PTHR13691:SF42	SUBFAMILY NOT NAMED	coord: 1..80
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 1..80
IPR022671	Ribosomal protein L2, conserved site	PROSITE	PS00467	RIBOSOMAL_L2	coord: 65..76
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC03g0436.1	MC03g0436.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0002181	cytoplasmic translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016740	transferase activity