MC03g0422 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC03g0422
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionSenescence-associated protein
LocationMC03: 11149706 .. 11149828 (+)
RNA-Seq ExpressionMC03g0422
SyntenyMC03g0422
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGCACTCGATCTTCCAGATTTTCAAGAGCCGTCAGGGGCGCATCGGACATCACGTGACGTGCGGTGCTCTTTCAATTGCTGGACCCTACTTTCGGCTGAGCCGTTTCCAGGGCGGGCGGGCT

mRNA sequence

AGGCACTCGATCTTCCAGATTTTCAAGAGCCGTCAGGGGCGCATCGGACATCACGTGACGTGCGGTGCTCTTTCAATTGCTGGACCCTACTTTCGGCTGAGCCGTTTCCAGGGCGGGCGGGCT

Coding sequence (CDS)

AGGCACTCGATCTTCCAGATTTTCAAGAGCCGTCAGGGGCGCATCGGACATCACGTGACGTGCGGTGCTCTTTCAATTGCTGGACCCTACTTTCGGCTGAGCCGTTTCCAGGGCGGGCGGGCT

Protein sequence

RHSIFQIFKSRQGRIGHHVTCGALSIAGPYFRLSRFQGGRA
Homology
BLAST of MC03g0422 vs. NCBI nr
Match: RBK27891.1 (hypothetical protein BRN67_22355 [Xanthomonas oryzae pv. oryzae] >RBK45309.1 hypothetical protein BRN70_00015 [Xanthomonas oryzae pv. oryzae] >RBK81698.1 hypothetical protein BRN65_00030 [Xanthomonas oryzae pv. oryzae] >RDY64913.1 hypothetical protein BRN20_02585 [Xanthomonas oryzae pv. oryzae])

HSP 1 Score: 72.0 bits (175), Expect = 3.71e-15
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0

Query: 1  RHSIFQIFKSRQGRIGHHVTCGALSIAGPYFRLSRFQGGRA 41
          RHS+ +IFK R+GRIGHH TCGAL  AGPY RLSRFQGG+A
Sbjct: 31 RHSVLRIFKGRRGRIGHHATCGALPAAGPYLRLSRFQGGQA 71

BLAST of MC03g0422 vs. NCBI nr
Match: RBB05860.1 (hypothetical protein BRN69_00015 [Xanthomonas oryzae pv. oryzae] >RBB45099.1 hypothetical protein BRN64_00015 [Xanthomonas oryzae pv. oryzae] >RBC48638.1 hypothetical protein BRN22_22060 [Xanthomonas oryzae pv. oryzae])

HSP 1 Score: 71.6 bits (174), Expect = 5.27e-15
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 0

Query: 1  RHSIFQIFKSRQGRIGHHVTCGALSIAGPYFRLSRFQGGRA 41
          RHS+ +IFK R+GR GHH TCGAL  AGPY RLSRFQGGRA
Sbjct: 31 RHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSRFQGGRA 71

BLAST of MC03g0422 vs. NCBI nr
Match: RBA76166.1 (hypothetical protein BRN68_00010 [Xanthomonas oryzae pv. oryzae])

HSP 1 Score: 72.0 bits (175), Expect = 5.62e-15
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0

Query: 1  RHSIFQIFKSRQGRIGHHVTCGALSIAGPYFRLSRFQGGRA 41
          RHS+ +IFK R+GRIGHH TCGAL  AGPY RLSRFQGG+A
Sbjct: 47 RHSVLRIFKGRRGRIGHHATCGALPAAGPYLRLSRFQGGQA 87

BLAST of MC03g0422 vs. NCBI nr
Match: EFH60492.1 (expressed protein [Arabidopsis lyrata subsp. lyrata] >EFH60493.1 predicted protein [Arabidopsis lyrata subsp. lyrata] >EFH60497.1 predicted protein [Arabidopsis lyrata subsp. lyrata] >EFH62582.1 predicted protein [Arabidopsis lyrata subsp. lyrata] >EFH62583.1 expressed protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 70.1 bits (170), Expect = 1.21e-14
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0

Query: 1  RHSIFQIFKSRQGRIGHHVTCGALSIAGPYFRLSRFQGGRA 41
          RHS+ +IFK R+GR GHH TCGAL  AGPY RLSRFQGG+A
Sbjct: 8  RHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSRFQGGQA 48

BLAST of MC03g0422 vs. NCBI nr
Match: PSD99776.1 (hypothetical protein C7G66_19010, partial [Acinetobacter baumannii])

HSP 1 Score: 70.1 bits (170), Expect = 1.43e-14
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0

Query: 1  RHSIFQIFKSRQGRIGHHVTCGALSIAGPYFRLSRFQGGRA 41
          RHS+ +IFK R+GR GHH TCGAL  AGPY RLSRFQGG+A
Sbjct: 15 RHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSRFQGGQA 55

BLAST of MC03g0422 vs. ExPASy TrEMBL
Match: D7L5C8 (Expressed protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_900474 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.88e-15
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0

Query: 1  RHSIFQIFKSRQGRIGHHVTCGALSIAGPYFRLSRFQGGRA 41
          RHS+ +IFK R+GR GHH TCGAL  AGPY RLSRFQGG+A
Sbjct: 8  RHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSRFQGGQA 48

BLAST of MC03g0422 vs. ExPASy TrEMBL
Match: A0A2V4A4M0 (Uncharacterized protein OS=Marinifilum breve OX=2184082 GN=DF185_22865 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.04e-14
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0

Query: 1  RHSIFQIFKSRQGRIGHHVTCGALSIAGPYFRLSRFQGGRA 41
          RHS+ +IFK R+GR GHH TCGAL  AGPY RLSRFQGG+A
Sbjct: 31 RHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSRFQGGQA 71

BLAST of MC03g0422 vs. ExPASy TrEMBL
Match: R7VHQ4 (Uncharacterized protein (Fragment) OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_143611 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.45e-14
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0

Query: 1  RHSIFQIFKSRQGRIGHHVTCGALSIAGPYFRLSRFQGGRA 41
          RHS+ +IFK R+GR GHH TCGAL  AGPY RLSRFQGG+A
Sbjct: 44 RHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSRFQGGQA 84

BLAST of MC03g0422 vs. ExPASy TrEMBL
Match: A0A3A6Q4D0 (Uncharacterized protein (Fragment) OS=Vibrio sinensis OX=2302434 GN=DZ860_23685 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.53e-14
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0

Query: 1  RHSIFQIFKSRQGRIGHHVTCGALSIAGPYFRLSRFQGGRA 41
          RHS+ +IFK R+GR GHH TCGAL  AGPY RLSRFQGG+A
Sbjct: 46 RHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSRFQGGQA 86

BLAST of MC03g0422 vs. ExPASy TrEMBL
Match: A0A431H2M8 (Uncharacterized protein OS=Enterococcus faecalis OX=1351 GN=DRJ71_16020 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.57e-14
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0

Query: 1  RHSIFQIFKSRQGRIGHHVTCGALSIAGPYFRLSRFQGGRA 41
          RHS+ +IFK R+GR GHH TCGAL  AGPY RLSRFQGG+A
Sbjct: 47 RHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSRFQGGQA 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
RBK27891.13.71e-1575.61hypothetical protein BRN67_22355 [Xanthomonas oryzae pv. oryzae] >RBK45309.1 hyp... [more]
RBB05860.15.27e-1575.61hypothetical protein BRN69_00015 [Xanthomonas oryzae pv. oryzae] >RBB45099.1 hyp... [more]
RBA76166.15.62e-1575.61hypothetical protein BRN68_00010 [Xanthomonas oryzae pv. oryzae][more]
EFH60492.11.21e-1473.17expressed protein [Arabidopsis lyrata subsp. lyrata] >EFH60493.1 predicted prote... [more]
PSD99776.11.43e-1473.17hypothetical protein C7G66_19010, partial [Acinetobacter baumannii][more]
Match NameE-valueIdentityDescription
D7L5C85.88e-1573.17Expressed protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_900... [more]
A0A2V4A4M01.04e-1473.17Uncharacterized protein OS=Marinifilum breve OX=2184082 GN=DF185_22865 PE=4 SV=1[more]
R7VHQ41.45e-1473.17Uncharacterized protein (Fragment) OS=Capitella teleta OX=283909 GN=CAPTEDRAFT_1... [more]
A0A3A6Q4D01.53e-1473.17Uncharacterized protein (Fragment) OS=Vibrio sinensis OX=2302434 GN=DZ860_23685 ... [more]
A0A431H2M81.57e-1473.17Uncharacterized protein OS=Enterococcus faecalis OX=1351 GN=DRJ71_16020 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33047PROTEIN TAR1coord: 1..40
NoneNo IPR availablePANTHERPTHR33047:SF22SENESCENCE-ASSOCIATED PROTEINcoord: 1..40

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC03g0422.1MC03g0422.1mRNA