MC03g0372 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC03g0372
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	30S ribosomal protein S12, chloroplastic
Location	MC03: 10479390 .. 10479566 (-)
RNA-Seq Expression	MC03g0372
Synteny	MC03g0372

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCACTATCACCCCTAAAAAACCAAACTCTGTCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATAACTACTTATATACCTGGTATTGGTCATAATTTACAAGAACATTATGTAGTCTTAATAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCAC

mRNA sequence

TCCACTATCACCCCTAAAAAACCAAACTCTGTCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATAACTACTTATATACCTGGTATTGGTCATAATTTACAAGAACATTATGTAGTCTTAATAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCAC

Coding sequence (CDS)

TCCACTATCACCCCTAAAAAACCAAACTCTGTCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATAACTACTTATATACCTGGTATTGGTCATAATTTACAAGAACATTATGTAGTCTTAATAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCAC

Protein sequence

STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH

Homology

[Close]

BLAST of MC03g0372 vs. ExPASy Swiss-Prot
Match: A4QJX7 (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 6.8e-26
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH 60
          STITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Sbjct: 39 STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 97

[Close]

BLAST of MC03g0372 vs. ExPASy Swiss-Prot
Match: A4QJV5 (30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.0e-25
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 2  TITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH 60
          TITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 96

[Close]

BLAST of MC03g0372 vs. ExPASy Swiss-Prot
Match: Q3V510 (30S ribosomal protein S12, chloroplastic OS=Acorus calamus OX=4465 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.0e-25
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 2  TITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH 60
          TITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 96

[Close]

BLAST of MC03g0372 vs. ExPASy Swiss-Prot
Match: A4QJD9 (30S ribosomal protein S12, chloroplastic OS=Aethionema cordifolium OX=434059 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.0e-25
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 2  TITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH 60
          TITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 96

[Close]

BLAST of MC03g0372 vs. ExPASy Swiss-Prot
Match: A4QJM3 (30S ribosomal protein S12, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.0e-25
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 2  TITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH 60
          TITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 96

[Close]

BLAST of MC03g0372 vs. NCBI nr
Match: VVW89850.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 117 bits (292), Expect = 1.11e-32
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH 59
          STITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Sbjct: 12 STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 70

[Close]

BLAST of MC03g0372 vs. NCBI nr
Match: RWV89324.1 (hypothetical protein GW17_00048527, partial [Ensete ventricosum])

HSP 1 Score: 117 bits (292), Expect = 1.24e-32
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH 59
          STITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Sbjct: 10 STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 68

[Close]

BLAST of MC03g0372 vs. NCBI nr
Match: KYP43640.1 (hypothetical protein KK1_034921, partial [Cajanus cajan] >KYP55165.1 hypothetical protein KK1_001372, partial [Cajanus cajan])

HSP 1 Score: 117 bits (292), Expect = 1.32e-32
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH 59
          STITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Sbjct: 1  STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 59

[Close]

BLAST of MC03g0372 vs. NCBI nr
Match: CDI73623.1 (ribosomal protein S12, 3, partial [Pyrus spinosa])

HSP 1 Score: 117 bits (292), Expect = 1.61e-32
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH 59
          STITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Sbjct: 1  STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 59

[Close]

BLAST of MC03g0372 vs. NCBI nr
Match: KYP38045.1 (hypothetical protein KK1_040718, partial [Cajanus cajan] >VVW90961.1 unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 117 bits (292), Expect = 1.66e-32
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH 59
          STITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Sbjct: 9  STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 67

[Close]

BLAST of MC03g0372 vs. ExPASy TrEMBL
Match: A0A5K1HM42 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30506 PE=3 SV=1)

HSP 1 Score: 117 bits (292), Expect = 5.38e-33
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH 59
          STITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Sbjct: 12 STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 70

[Close]

BLAST of MC03g0372 vs. ExPASy TrEMBL
Match: A0A444CTW6 (Uncharacterized protein (Fragment) OS=Ensete ventricosum OX=4639 GN=GW17_00048527 PE=3 SV=1)

HSP 1 Score: 117 bits (292), Expect = 6.02e-33
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH 59
          STITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Sbjct: 10 STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 68

[Close]

BLAST of MC03g0372 vs. ExPASy TrEMBL
Match: A0A151RM35 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_001372 PE=3 SV=1)

HSP 1 Score: 117 bits (292), Expect = 6.38e-33
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH 59
          STITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Sbjct: 1  STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 59

[Close]

BLAST of MC03g0372 vs. ExPASy TrEMBL
Match: A0A287NDH3 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1)

HSP 1 Score: 117 bits (292), Expect = 6.75e-33
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH 59
          STITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Sbjct: 3  STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 61

[Close]

BLAST of MC03g0372 vs. ExPASy TrEMBL
Match: V6BPW7 (Ribosomal protein S12, 3 (Fragment) OS=Pyrus spinosa OX=1143245 GN=rps12 PE=3 SV=1)

HSP 1 Score: 117 bits (292), Expect = 7.80e-33
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH 59
          STITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Sbjct: 1  STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 59

[Close]

BLAST of MC03g0372 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-26
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 2  TITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH 60
          TITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 96

[Close]

BLAST of MC03g0372 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-26
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 2  TITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH 60
          TITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 96

[Close]

BLAST of MC03g0372 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-26
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 2  TITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH 60
          TITPKKPNS LRKVARVRLTSGFEIT YIPGIGHNLQEH VVL+RGGRVKDLPGVRYH
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYH 96

[Close]

BLAST of MC03g0372 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.0e-16
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 1  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH 60
          ST TPKKPNS  RK+A+VRL++  +I  +IPG GHN QEH  VLIRGGRVKD PGV+ H
Sbjct: 38 STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSH 96

[Close]

BLAST of MC03g0372 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.0e-16
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 1  STITPKKPNSVLRKVARVRLTSGFEITTYIPGIGHNLQEHYVVLIRGGRVKDLPGVRYH 60
          ST TPKKPNS  RK+A+VRL++  +I  +IPG GHN QEH  VLIRGGRVKD PGV+ H
Sbjct: 38 STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSH 96

The following BLAST results are available for this feature:

BLAST of MC03g0372 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4QJX7	6.8e-26	93.22	30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN...	[more]
A4QJV5	2.0e-25	93.10	30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN...	[more]
Q3V510	2.0e-25	93.10	30S ribosomal protein S12, chloroplastic OS=Acorus calamus OX=4465 GN=rps12-A PE...	[more]
A4QJD9	2.0e-25	93.10	30S ribosomal protein S12, chloroplastic OS=Aethionema cordifolium OX=434059 GN=...	[more]
A4QJM3	2.0e-25	93.10	30S ribosomal protein S12, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=...	[more]

BLAST of MC03g0372 vs. NCBI nr


Match Name	E-value	Identity	Description
VVW89850.1	1.11e-32	93.22	unnamed protein product, partial [Nymphaea colorata]	[more]
RWV89324.1	1.24e-32	93.22	hypothetical protein GW17_00048527, partial [Ensete ventricosum]	[more]
KYP43640.1	1.32e-32	93.22	hypothetical protein KK1_034921, partial [Cajanus cajan] >KYP55165.1 hypothetica...	[more]
CDI73623.1	1.61e-32	93.22	ribosomal protein S12, 3, partial [Pyrus spinosa]	[more]
KYP38045.1	1.66e-32	93.22	hypothetical protein KK1_040718, partial [Cajanus cajan] >VVW90961.1 unnamed pro...	[more]

BLAST of MC03g0372 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5K1HM42	5.38e-33	93.22	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30...	[more]
A0A444CTW6	6.02e-33	93.22	Uncharacterized protein (Fragment) OS=Ensete ventricosum OX=4639 GN=GW17_0004852...	[more]
A0A151RM35	6.38e-33	93.22	Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_001372 PE=3 S...	[more]
A0A287NDH3	6.75e-33	93.22	Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1	[more]
V6BPW7	7.80e-33	93.22	Ribosomal protein S12, 3 (Fragment) OS=Pyrus spinosa OX=1143245 GN=rps12 PE=3 SV...	[more]

BLAST of MC03g0372 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00065.1	1.4e-26	93.10	ribosomal protein S12A	[more]
ATCG01230.1	1.4e-26	93.10	ribosomal protein S12B	[more]
ATCG00905.1	1.4e-26	93.10	ribosomal protein S12C	[more]
AT2G07675.1	1.0e-16	66.10	Ribosomal protein S12/S23 family protein	[more]
ATMG00980.1	1.0e-16	66.10	Ribosomal protein S12/S23 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006032	Ribosomal protein S12/S23	PRINTS	PR01034	RIBOSOMALS12	coord: 40..57 score: 82.95 coord: 5..20 score: 85.16 coord: 21..40 score: 70.76 coord: 57..59 score: 12.5
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 2..59 e-value: 1.6E-24 score: 85.7
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 1..59
None	No IPR available	GENE3D	2.40.50.140		coord: 1..59 e-value: 8.6E-32 score: 111.5
None	No IPR available	PANTHER	PTHR11652:SF51	S12-LIKE, 30S RIBOSOMAL PROTEIN S12 SUBFAMILY PROTEIN	coord: 1..59
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC03g0372.1	MC03g0372.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome