MC03g0234 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC03g0234
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionPolynucleotidyl transferase, ribonuclease H-like superfamily protein
LocationMC03: 6091072 .. 6091191 (-)
RNA-Seq ExpressionMC03g0234
SyntenyMC03g0234
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CATACGAATGCAGCATGGCCAGCTGATACAAACACCAGGGGGATTGGCTGGATTTTAAGAGACGAGAAGGGAGAAGTCATCAGAGCAGGCTGTAGAATTATAAGAGCGAAAAGAAATATT

mRNA sequence

CATACGAATGCAGCATGGCCAGCTGATACAAACACCAGGGGGATTGGCTGGATTTTAAGAGACGAGAAGGGAGAAGTCATCAGAGCAGGCTGTAGAATTATAAGAGCGAAAAGAAATATT

Coding sequence (CDS)

CATACGAATGCAGCATGGCCAGCTGATACAAACACCAGGGGGATTGGCTGGATTTTAAGAGACGAGAAGGGAGAAGTCATCAGAGCAGGCTGTAGAATTATAAGAGCGAAAAGAAATATT

Protein sequence

HTNAAWPADTNTRGIGWILRDEKGEVIRAGCRIIRAKRNI
Homology
[Close]
BLAST of MC03g0234 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 73.9 bits (180), Expect = 1.52e-14
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 1   HTNAAWPADTNTRGIGWILRDEKGEVIRAGCRIIRAKRNI 40
           +TNAAW ADTNT GIGWILRDEKGEVI+A CRIIRA+RNI
Sbjct: 90  NTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNI 129

[Close]
BLAST of MC03g0234 vs. NCBI nr
Match: XP_022154991.1 (uncharacterized protein LOC111022134 isoform X2 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 1.25e-13
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 1   HTNAAWPADTNTRGIGWILRDEKGEVIRAGCRIIRAKRNI 40
           +T+AAW ADTNT GIGWILRDEKGEVI+ GCRIIRA+RNI
Sbjct: 231 NTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNI 270

[Close]
BLAST of MC03g0234 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 1.52e-13
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 1   HTNAAWPADTNTRGIGWILRDEKGEVIRAGCRIIRAKRNI 40
           +T+AAW ADTNT GIGWILRDEKGEVI+ GCRIIRA+RNI
Sbjct: 266 NTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNI 305

[Close]
BLAST of MC03g0234 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 70.1 bits (170), Expect = 5.03e-13
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 0 

Query: 1   HTNAAWPADTNTRGIGWILRDEKGEVIRAGCRIIRAKRNI 40
           +T+AAW ADTNT GIGWILRDEKGEVI+A CRIIR +RNI
Sbjct: 90  NTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNI 129

[Close]
BLAST of MC03g0234 vs. NCBI nr
Match: XP_010474601.1 (PREDICTED: uncharacterized protein LOC104754160 [Camelina sativa])

HSP 1 Score: 46.2 bits (108), Expect = 4.53e-04
Identity = 16/40 (40.00%), Postives = 29/40 (72.50%), Query Frame = 0 

Query: 1    HTNAAWPADTNTRGIGWILRDEKGEVIRAGCRIIRAKRNI 40
            +++ AWP D +T G+GW+LRD +G+++ AG R++   R +
Sbjct: 1220 NSDGAWPHDGDTGGLGWVLRDNRGKILWAGVRLVSKTRTV 1259

[Close]
BLAST of MC03g0234 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 7.35e-15
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 1   HTNAAWPADTNTRGIGWILRDEKGEVIRAGCRIIRAKRNI 40
           +TNAAW ADTNT GIGWILRDEKGEVI+A CRIIRA+RNI
Sbjct: 90  NTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNI 129

[Close]
BLAST of MC03g0234 vs. ExPASy TrEMBL
Match: A0A6J1DQC9 (uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.07e-14
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 1   HTNAAWPADTNTRGIGWILRDEKGEVIRAGCRIIRAKRNI 40
           +T+AAW ADTNT GIGWILRDEKGEVI+ GCRIIRA+RNI
Sbjct: 231 NTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNI 270

[Close]
BLAST of MC03g0234 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.37e-14
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 1   HTNAAWPADTNTRGIGWILRDEKGEVIRAGCRIIRAKRNI 40
           +T+AAW ADTNT GIGWILRDEKGEVI+ GCRIIRA+RNI
Sbjct: 266 NTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNI 305

[Close]
BLAST of MC03g0234 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.44e-13
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 0 

Query: 1   HTNAAWPADTNTRGIGWILRDEKGEVIRAGCRIIRAKRNI 40
           +T+AAW ADTNT GIGWILRDEKGEVI+A CRIIR +RNI
Sbjct: 90  NTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNI 129

[Close]
BLAST of MC03g0234 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 41.2 bits (95), Expect = 2.3e-04
Identity = 17/40 (42.50%), Postives = 25/40 (62.50%), Query Frame = 0 

Query: 1   HTNAAWPADTNTRGIGWILRDEKGEVIRAGCRIIRAKRNI 41
           +T+A W  D    GIGW+LR+EKGEV   G R +   +++
Sbjct: 431 NTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSV 470

[Close]
BLAST of MC03g0234 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 39.3 bits (90), Expect = 8.7e-04
Identity = 16/40 (40.00%), Postives = 24/40 (60.00%), Query Frame = 0 

Query: 1   HTNAAWPADTNTRGIGWILRDEKGEVIRAGCRIIRAKRNI 41
           +T+A W  +    GIGWILR+E G V+  G R +   +N+
Sbjct: 148 NTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNV 187

The following BLAST results are available for this feature:
BLAST of MC03g0234 vs.
Match NameE-valueIdentityDescription
BLAST of MC03g0234 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022143535.11.52e-1485.00uncharacterized protein LOC111013412 [Momordica charantia][more]
XP_022154991.11.25e-1382.50uncharacterized protein LOC111022134 isoform X2 [Momordica charantia][more]
XP_022154990.11.52e-1382.50uncharacterized protein LOC111022134 isoform X1 [Momordica charantia][more]
XP_022156777.15.03e-1380.00uncharacterized protein LOC111023608 [Momordica charantia][more]
XP_010474601.14.53e-0440.00PREDICTED: uncharacterized protein LOC104754160 [Camelina sativa][more]
BLAST of MC03g0234 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CP267.35e-1585.00uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DQC96.07e-1482.50uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DL647.37e-1482.50uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DSV12.44e-1380.00uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
BLAST of MC03g0234 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G29090.12.3e-0442.50Ribonuclease H-like superfamily protein [more]
AT2G34320.18.7e-0440.00Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC03g0234.1MC03g0234.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity