MC03g0199 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC03g0199
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ribosomal protein S10
Location	MC03: 3753846 .. 3753998 (-)
RNA-Seq Expression	MC03g0199
Synteny	MC03g0199

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATCACGAGTCAACTATACTGTGTTACGATCACCTCATATTGATAAAAAGTCCAGAGAACAATTTGAAATGGAAATCAAGAAACAATTTCTGGTCATAAAAACAGAAAGGCATGAATTGCGCAAGAAGTTCTTTCGGTTAAAACGCCGTGCG

mRNA sequence

GAATCACGAGTCAACTATACTGTGTTACGATCACCTCATATTGATAAAAAGTCCAGAGAACAATTTGAAATGGAAATCAAGAAACAATTTCTGGTCATAAAAACAGAAAGGCATGAATTGCGCAAGAAGTTCTTTCGGTTAAAACGCCGTGCG

Coding sequence (CDS)

GAATCACGAGTCAACTATACTGTGTTACGATCACCTCATATTGATAAAAAGTCCAGAGAACAATTTGAAATGGAAATCAAGAAACAATTTCTGGTCATAAAAACAGAAAGGCATGAATTGCGCAAGAAGTTCTTTCGGTTAAAACGCCGTGCG

Protein sequence

ESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRA

Homology

[Close]

BLAST of MC03g0199 vs. ExPASy Swiss-Prot
Match: P51428 (Ribosomal protein S10, mitochondrial OS=Pisum sativum OX=3888 GN=RPS10 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.2e-16
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 1  ESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRR 51
          ESRV YTVLRSPHIDKKSREQFEMEIKK++LVIKTE+HELRKKFF LKR+
Sbjct: 35 ESRVLYTVLRSPHIDKKSREQFEMEIKKKYLVIKTEKHELRKKFFWLKRQ 84

[Close]

BLAST of MC03g0199 vs. ExPASy Swiss-Prot
Match: P42797 (40S ribosomal protein S10, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS10 PE=1 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 1.8e-11
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 1   ESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR 50
           ++R  YTVLRSPH+DKKSREQFEM  KK+FLVIK + HEL KK F LKR
Sbjct: 158 DTRTLYTVLRSPHVDKKSREQFEMRFKKRFLVIKAQSHELSKKLFWLKR 206

[Close]

BLAST of MC03g0199 vs. ExPASy Swiss-Prot
Match: P26869 (Ribosomal protein S10, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS10 PE=3 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-09
Identity = 33/43 (76.74%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 6  YTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLK 49
          YTVLRSPHIDKKSREQFEM I KQ LVI+TE H+LR+K   LK
Sbjct: 35 YTVLRSPHIDKKSREQFEMRIHKQLLVIETETHKLREKLNWLK 77

[Close]

BLAST of MC03g0199 vs. ExPASy Swiss-Prot
Match: Q6MJ14 (30S ribosomal protein S10 OS=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIMB 9529 / HD100) OX=264462 GN=rpsJ PE=3 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 4.9e-04
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 2  SRVN-YTVLRSPHIDKKSREQFEMEIKKQFLVI 34
          +R+N YTVLRSPH+DKKSREQFE+   K+ L I
Sbjct: 44 TRINRYTVLRSPHVDKKSREQFEVRTHKRMLDI 76

[Close]

BLAST of MC03g0199 vs. ExPASy Swiss-Prot
Match: A0LII9 (30S ribosomal protein S10 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) OX=335543 GN=rpsJ PE=3 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 6.3e-04
Identity = 19/28 (67.86%), Postives = 24/28 (85.71%), Query Frame = 0


Query: 6  YTVLRSPHIDKKSREQFEMEIKKQFLVI 34
          YTVLRSPH+DKKSREQFE+ + K+ + I
Sbjct: 50 YTVLRSPHVDKKSREQFEIRVHKRLIDI 77

[Close]

BLAST of MC03g0199 vs. NCBI nr
Match: YP_009935535.1 (ribosomal protein S10 [Sapindus mukorossi] >QNS26095.1 ribosomal protein S10 [Sapindus mukorossi])

HSP 1 Score: 92.8 bits (229), Expect = 8.30e-23
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1   ESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRA 51
           ESRV YTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRA
Sbjct: 55  ESRVLYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRA 105

[Close]

BLAST of MC03g0199 vs. NCBI nr
Match: KAF4348321.1 (hypothetical protein F8388_018561 [Cannabis sativa] >KAF4349925.1 hypothetical protein G4B88_002347 [Cannabis sativa])

HSP 1 Score: 92.8 bits (229), Expect = 1.09e-22
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1   ESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRA 51
           ESRV YTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRA
Sbjct: 65  ESRVLYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRA 115

[Close]

BLAST of MC03g0199 vs. NCBI nr
Match: YP_009913641.1 (ribosomal protein S10 [Luffa acutangula] >QLM02673.1 ribosomal protein S10 [Luffa acutangula])

HSP 1 Score: 92.8 bits (229), Expect = 1.12e-22
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1  ESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR 49
          ESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR
Sbjct: 35 ESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR 83

[Close]

BLAST of MC03g0199 vs. NCBI nr
Match: YP_009306084.1 (ribosomal protein S10 [Corchorus capsularis] >AOO95922.1 ribosomal protein S10 [Corchorus capsularis])

HSP 1 Score: 90.9 bits (224), Expect = 1.78e-22
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1  ESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRA 51
          ESRV YTVLRSPHIDKKSREQFE+EIKKQFL+IKTERHELRKKFFRLKRRA
Sbjct: 19 ESRVLYTVLRSPHIDKKSREQFEIEIKKQFLIIKTERHELRKKFFRLKRRA 69

[Close]

BLAST of MC03g0199 vs. NCBI nr
Match: YP_009704572.1 (ribosomal protein S10 [Spondias mombin] >YP_009704610.1 ribosomal protein S10 [Spondias tuberosa] >QEP09119.1 ribosomal protein S10 [Spondias mombin] >QEP09151.1 ribosomal protein S10 [Spondias tuberosa])

HSP 1 Score: 91.7 bits (226), Expect = 2.25e-22
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1   ESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRA 51
           ESRV YTVLRSPHIDKKSREQFEMEIKK+FLVIKTERHELRKKFFRLKRRA
Sbjct: 53  ESRVLYTVLRSPHIDKKSREQFEMEIKKEFLVIKTERHELRKKFFRLKRRA 103

[Close]

BLAST of MC03g0199 vs. ExPASy TrEMBL
Match: A0A7H1CQT7 (Ribosomal protein S10 OS=Sapindus mukorossi OX=57655 GN=rps10 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.02e-23
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1   ESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRA 51
           ESRV YTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRA
Sbjct: 55  ESRVLYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRA 105

[Close]

BLAST of MC03g0199 vs. ExPASy TrEMBL
Match: A0A7J6DQE3 (Ribosomal_S10 domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_018561 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.29e-23
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1   ESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRA 51
           ESRV YTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRA
Sbjct: 65  ESRVLYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRA 115

[Close]

BLAST of MC03g0199 vs. ExPASy TrEMBL
Match: A0A7D6IQL3 (Ribosomal protein S10 OS=Luffa acutangula OX=56866 GN=rps10 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.44e-23
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1  ESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR 49
          ESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR
Sbjct: 35 ESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR 83

[Close]

BLAST of MC03g0199 vs. ExPASy TrEMBL
Match: A0A1C9I9N7 (Ribosomal protein S10 OS=Corchorus capsularis OX=210143 GN=rps10 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.61e-23
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1  ESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRA 51
          ESRV YTVLRSPHIDKKSREQFE+EIKKQFL+IKTERHELRKKFFRLKRRA
Sbjct: 19 ESRVLYTVLRSPHIDKKSREQFEIEIKKQFLIIKTERHELRKKFFRLKRRA 69

[Close]

BLAST of MC03g0199 vs. ExPASy TrEMBL
Match: A0A5C2FRB4 (Ribosomal protein S10 OS=Spondias mombin OX=80338 GN=rps10 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.09e-22
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1   ESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKRRA 51
           ESRV YTVLRSPHIDKKSREQFEMEIKK+FLVIKTERHELRKKFFRLKRRA
Sbjct: 53  ESRVLYTVLRSPHIDKKSREQFEMEIKKEFLVIKTERHELRKKFFRLKRRA 103

[Close]

BLAST of MC03g0199 vs. TAIR 10
Match: AT3G22300.1 (ribosomal protein S10 )

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-12
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 1   ESRVNYTVLRSPHIDKKSREQFEMEIKKQFLVIKTERHELRKKFFRLKR 50
           ++R  YTVLRSPH+DKKSREQFEM  KK+FLVIK + HEL KK F LKR
Sbjct: 158 DTRTLYTVLRSPHVDKKSREQFEMRFKKRFLVIKAQSHELSKKLFWLKR 206

The following BLAST results are available for this feature:

BLAST of MC03g0199 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51428	4.2e-16	88.00	Ribosomal protein S10, mitochondrial OS=Pisum sativum OX=3888 GN=RPS10 PE=2 SV=1	[more]
P42797	1.8e-11	71.43	40S ribosomal protein S10, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS1...	[more]
P26869	2.2e-09	76.74	Ribosomal protein S10, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS10 P...	[more]
Q6MJ14	4.9e-04	66.67	30S ribosomal protein S10 OS=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM...	[more]
A0LII9	6.3e-04	67.86	30S ribosomal protein S10 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MP...	[more]

BLAST of MC03g0199 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009935535.1	8.30e-23	98.04	ribosomal protein S10 [Sapindus mukorossi] >QNS26095.1 ribosomal protein S10 [Sa...	[more]
KAF4348321.1	1.09e-22	98.04	hypothetical protein F8388_018561 [Cannabis sativa] >KAF4349925.1 hypothetical p...	[more]
YP_009913641.1	1.12e-22	100.00	ribosomal protein S10 [Luffa acutangula] >QLM02673.1 ribosomal protein S10 [Luff...	[more]
YP_009306084.1	1.78e-22	94.12	ribosomal protein S10 [Corchorus capsularis] >AOO95922.1 ribosomal protein S10 [...	[more]
YP_009704572.1	2.25e-22	96.08	ribosomal protein S10 [Spondias mombin] >YP_009704610.1 ribosomal protein S10 [S...	[more]

BLAST of MC03g0199 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7H1CQT7	4.02e-23	98.04	Ribosomal protein S10 OS=Sapindus mukorossi OX=57655 GN=rps10 PE=3 SV=1	[more]
A0A7J6DQE3	5.29e-23	98.04	Ribosomal_S10 domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_0185...	[more]
A0A7D6IQL3	5.44e-23	100.00	Ribosomal protein S10 OS=Luffa acutangula OX=56866 GN=rps10 PE=3 SV=1	[more]
A0A1C9I9N7	8.61e-23	94.12	Ribosomal protein S10 OS=Corchorus capsularis OX=210143 GN=rps10 PE=3 SV=1	[more]
A0A5C2FRB4	1.09e-22	96.08	Ribosomal protein S10 OS=Spondias mombin OX=80338 GN=rps10 PE=3 SV=1	[more]

BLAST of MC03g0199 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22300.1	1.3e-12	71.43	ribosomal protein S10	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027486	Ribosomal protein S10 domain	PFAM	PF00338	Ribosomal_S10	coord: 4..46 e-value: 8.2E-10 score: 38.8
IPR036838	Ribosomal protein S10 domain superfamily	GENE3D	3.30.70.600	Ribosomal protein S10 domain	coord: 1..51 e-value: 2.6E-12 score: 48.5
IPR036838	Ribosomal protein S10 domain superfamily	SUPERFAMILY	54999	Ribosomal protein S10	coord: 3..47
IPR001848	Ribosomal protein S10	PANTHER	PTHR11700	30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER	coord: 1..49
None	No IPR available	PANTHER	PTHR11700:SF7	40S RIBOSOMAL PROTEIN S10, MITOCHONDRIAL	coord: 1..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC03g0199.1	MC03g0199.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome