MC03g0197 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC03g0197
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	metallothionein-like protein LSC54
Location	MC03: 3683234 .. 3683350 (-)
RNA-Seq Expression	MC03g0197
Synteny	MC03g0197

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCTTTTCAAAAAAGAAATTGATCGAGAGTTTGAGAAATATTTTGATGGCTTCTGGCTGCAAGTGTGGTGACAATTGCTCTTGTGGAGATAGCTGCAATTGCCTTTCTGGGTCTCTC

mRNA sequence

AGCTTTTCAAAAAAGAAATTGATCGAGAGTTTGAGAAATATTTTGATGGCTTCTGGCTGCAAGTGTGGTGACAATTGCTCTTGTGGAGATAGCTGCAATTGCCTTTCTGGGTCTCTC

Coding sequence (CDS)

AGCTTTTCAAAAAAGAAATTGATCGAGAGTTTGAGAAATATTTTGATGGCTTCTGGCTGCAAGTGTGGTGACAATTGCTCTTGTGGAGATAGCTGCAATTGCCTTTCTGGGTCTCTC

Protein sequence

SFSKKKLIESLRNILMASGCKCGDNCSCGDSCNCLSGSL

Homology

[Close]

BLAST of MC03g0197 vs. NCBI nr
Match: KAG7019194.1 (hypothetical protein SDJN02_18152 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 53.5 bits (127), Expect = 5.50e-08
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = 0


Query: 16 MASGCKCGDNCSCGDSCNCLSGSL 39
          MASGCKCGDNCSCGDSCNCLSG++
Sbjct: 1  MASGCKCGDNCSCGDSCNCLSGTV 24

[Close]

BLAST of MC03g0197 vs. NCBI nr
Match: XP_022997994.1 (metallothionein-like protein LSC54 [Cucurbita maxima])

HSP 1 Score: 52.4 bits (124), Expect = 2.08e-07
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 3  SKKKLIESLRNILMASGCKCGDNCSCGDSCNCLSGSL 39
          +K K +  LRN  M SGCKCGD+CSCGDSCNC SGS+
Sbjct: 18 NKSKNLGFLRN-KMGSGCKCGDSCSCGDSCNCQSGSI 53

[Close]

BLAST of MC03g0197 vs. ExPASy TrEMBL
Match: A0A6J1KD42 (metallothionein-like protein LSC54 OS=Cucurbita maxima OX=3661 GN=LOC111492782 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.01e-07
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 3  SKKKLIESLRNILMASGCKCGDNCSCGDSCNCLSGSL 39
          +K K +  LRN  M SGCKCGD+CSCGDSCNC SGS+
Sbjct: 18 NKSKNLGFLRN-KMGSGCKCGDSCSCGDSCNCQSGSI 53

The following BLAST results are available for this feature:

BLAST of MC03g0197 vs.


Match Name	E-value	Identity	Description

BLAST of MC03g0197 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019194.1	5.50e-08	91.67	hypothetical protein SDJN02_18152 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022997994.1	2.08e-07	67.57	metallothionein-like protein LSC54 [Cucurbita maxima]	[more]

BLAST of MC03g0197 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KD42	1.01e-07	67.57	metallothionein-like protein LSC54 OS=Cucurbita maxima OX=3661 GN=LOC111492782 P...	[more]

BLAST of MC03g0197 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF12749	Metallothio_Euk	coord: 15..34 e-value: 2.5E-5 score: 24.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC03g0197.1	MC03g0197.1	mRNA