MC03g0189 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC03g0189
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	RING-type E3 ubiquitin transferase
Location	MC03: 3540588 .. 3541025 (+)
RNA-Seq Expression	MC03g0189
Synteny	MC03g0189

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGACCCACCGCCACCGCCGCCCGTCTTACCGTCGAGTATCCTCTCCTCTCTCGATCTCGACTTTCTCAACATCGCGGGAATGTCCTCCCTCGCCCTCATGATCGTCTACTTCATCTACACCTGCTACGAGCACAAATACTCGCAACGGCAGACGGCAGCGGCAGCAGCGGGAGGGGGCGAGGAACGACGAGCCGCAGCCTCGACGGCGGAGATGCGCACGAAGCTGTTCCAGTACGGGGAGAGGGGCATAGAGGGGAGAAACGCCGATTGCTCGATTTGCTTGGACGAATTCAGTGAAGGGCAGGTTTGCAGAATGTTACCAAAATGTAAACATATTTTTCACAGATTTTGCATCGATCAGTGGCTTCCTAATCAGCCACATTGCCCTCTCTGTCGCTCTCCTGTTCGTGTTCGTATCGTTTATTCAAACCAATCT

mRNA sequence

CTCGACCCACCGCCACCGCCGCCCGTCTTACCGTCGAGTATCCTCTCCTCTCTCGATCTCGACTTTCTCAACATCGCGGGAATGTCCTCCCTCGCCCTCATGATCGTCTACTTCATCTACACCTGCTACGAGCACAAATACTCGCAACGGCAGACGGCAGCGGCAGCAGCGGGAGGGGGCGAGGAACGACGAGCCGCAGCCTCGACGGCGGAGATGCGCACGAAGCTGTTCCAGTACGGGGAGAGGGGCATAGAGGGGAGAAACGCCGATTGCTCGATTTGCTTGGACGAATTCAGTGAAGGGCAGGTTTGCAGAATGTTACCAAAATGTAAACATATTTTTCACAGATTTTGCATCGATCAGTGGCTTCCTAATCAGCCACATTGCCCTCTCTGTCGCTCTCCTGTTCGTGTTCGTATCGTTTATTCAAACCAATCT

Coding sequence (CDS)

CTCGACCCACCGCCACCGCCGCCCGTCTTACCGTCGAGTATCCTCTCCTCTCTCGATCTCGACTTTCTCAACATCGCGGGAATGTCCTCCCTCGCCCTCATGATCGTCTACTTCATCTACACCTGCTACGAGCACAAATACTCGCAACGGCAGACGGCAGCGGCAGCAGCGGGAGGGGGCGAGGAACGACGAGCCGCAGCCTCGACGGCGGAGATGCGCACGAAGCTGTTCCAGTACGGGGAGAGGGGCATAGAGGGGAGAAACGCCGATTGCTCGATTTGCTTGGACGAATTCAGTGAAGGGCAGGTTTGCAGAATGTTACCAAAATGTAAACATATTTTTCACAGATTTTGCATCGATCAGTGGCTTCCTAATCAGCCACATTGCCCTCTCTGTCGCTCTCCTGTTCGTGTTCGTATCGTTTATTCAAACCAATCT

Protein sequence

LDPPPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQTAAAAAGGGEERRAAASTAEMRTKLFQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS

Homology

[Close]

BLAST of MC03g0189 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.6e-15
Identity = 57/160 (35.62%), Postives = 79/160 (49.38%), Query Frame = 0


Query: 3   PPPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQTAAAAAGGG-- 62
           PPPPPP  P   LS L    + + G   L L +V+F+Y    H   QR+ +AA+   G  
Sbjct: 26  PPPPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYL---HITQQRRISAASVTPGDT 85

Query: 63  ---------EERRAA---------------ASTAEMRTKLFQYGERGIEGRNADCSICLD 122
                    EER  +               ++   +    F+ GE  I+G   +CS+CL+
Sbjct: 86  NQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIIDG--TECSVCLN 145

Query: 123 EFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV 137
           EF E +  R+LPKC H FH  CID WL +  +CPLCR+PV
Sbjct: 146 EFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPV 180

[Close]

BLAST of MC03g0189 vs. ExPASy Swiss-Prot
Match: P0C041 (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 9.6e-13
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 81  ERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRV 139
           + G +    DCSICL EF+E +  R+LPKC H FH  CID+WL +  +CPLCR+ + V
Sbjct: 145 QNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIV 202

[Close]

BLAST of MC03g0189 vs. ExPASy Swiss-Prot
Match: Q7XLY8 (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 2.8e-12
Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 90  DCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV 137
           DCS+CL EFS+G+  R+LP+C H FH+ CID WL +  +CPLCR+ +
Sbjct: 156 DCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANI 202

[Close]

BLAST of MC03g0189 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.8e-12
Identity = 55/177 (31.07%), Postives = 84/177 (47.46%), Query Frame = 0


Query: 3   PPPPPPVL----PSSILSSLDLDFLNIAGMSSLALMIV--YFIYTCYEHKYSQRQTAAAA 62
           PPPPP        SS  SS     + + G+ + AL++V  Y + + Y H++ Q  ++   
Sbjct: 35  PPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSSETL 94

Query: 63  AGGGEERRAAASTAEMRTK-------------LFQY--GERGIEGRNADCSICLDEFSEG 122
                     +ST  + T              +++Y  G+  ++G  +DCS+CL EF E 
Sbjct: 95  NLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDG--SDCSVCLSEFEEN 154

Query: 123 QVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV------------RVRIVYSNQS 147
           +  R+LPKC H FH  CID WL +  +CPLCR+ V             V +V +NQS
Sbjct: 155 ESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTASVGQNVSVVVANQS 209

[Close]

BLAST of MC03g0189 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.8e-12
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 76  LFQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSP 135
           +F Y  +  E    +CS+CL EF E    R+LPKC H+FH  CID W  ++  CPLCR+P
Sbjct: 98  IFVYSVKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAP 157

Query: 136 VR 138
           V+
Sbjct: 158 VQ 159

[Close]

BLAST of MC03g0189 vs. NCBI nr
Match: XP_038895799.1 (E3 ubiquitin-protein ligase RING1-like [Benincasa hispida])

HSP 1 Score: 203 bits (516), Expect = 4.18e-64
Identity = 103/160 (64.38%), Postives = 118/160 (73.75%), Query Frame = 0


Query: 3   PPPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR------------ 62
           PPP P  L   +LS+LDLDFLN AG+S+LALMIVYFI+TCYE KY  R            
Sbjct: 4   PPPQPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYERKYWNRNGDIEGGRPPSS 63

Query: 63  ----QTAAAAAGGGEERRAAASTAEMRTKLFQYGERGIEGRNADCSICLDEFSEGQVCRM 122
               +  A+ AG    RR A STA + TKLFQYGE G+ G+NADCSICLDEFSEG++CRM
Sbjct: 64  GTVAEPLASEAGDSSSRRRA-STAVISTKLFQYGEGGLMGKNADCSICLDEFSEGEICRM 123

Query: 123 LPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS 146
           LPKCKH+FHRFCIDQWLPN+ HCP+CRSPV VRIVYSN S
Sbjct: 124 LPKCKHVFHRFCIDQWLPNERHCPVCRSPVHVRIVYSNPS 162

[Close]

BLAST of MC03g0189 vs. NCBI nr
Match: XP_022970579.1 (RING-H2 finger protein ATL14-like [Cucurbita maxima])

HSP 1 Score: 198 bits (503), Expect = 2.87e-62
Identity = 98/152 (64.47%), Postives = 121/152 (79.61%), Query Frame = 0


Query: 4   PPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR-------QTAAAA 63
           PPPPP L   +LS++DLDFLN AG+  LA+ I+YFIYT YEHKY  R       ++AA A
Sbjct: 3   PPPPPELSVDVLSTVDLDFLNFAGLFILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAATA 62

Query: 64  AGG--GEERRAAASTAEMRTKLFQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIF 123
           + G  GE+RR A  TA + T+LFQYGERG+EG+NADCSICLDEF EG++CRMLPKCKH+F
Sbjct: 63  SVGSSGEDRRWA--TAVISTRLFQYGERGMEGKNADCSICLDEFVEGEICRMLPKCKHVF 122

Query: 124 HRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS 146
           HRFCIDQWLPN+ HCPLCRSPV VR +++++S
Sbjct: 123 HRFCIDQWLPNERHCPLCRSPVHVRFIFAHRS 152

[Close]

BLAST of MC03g0189 vs. NCBI nr
Match: XP_023520573.1 (RING-H2 finger protein ATL51-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 192 bits (488), Expect = 5.51e-60
Identity = 92/150 (61.33%), Postives = 114/150 (76.00%), Query Frame = 0


Query: 4   PPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR-------QTAAAA 63
           PPP P L   +LS++DLDFLN AG+  LA+ I+YFIYT YEHKY  R       ++AA A
Sbjct: 3   PPPSPELSVDVLSTVDLDFLNFAGLLILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAATA 62

Query: 64  AGGGEERRAAASTAEMRTKLFQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHR 123
           A G        +TA + T+LFQYGERG+ G+NADCSICLDEF EG++CRMLPKCKH+FHR
Sbjct: 63  AVGSSGEDRGGATAVISTRLFQYGERGMVGKNADCSICLDEFVEGEICRMLPKCKHVFHR 122

Query: 124 FCIDQWLPNQPHCPLCRSPVRVRIVYSNQS 146
           FCIDQWLPN+ HCPLCRSPV VR +++++S
Sbjct: 123 FCIDQWLPNERHCPLCRSPVHVRFIFAHRS 152

[Close]

BLAST of MC03g0189 vs. NCBI nr
Match: KAG6583430.1 (putative RING-H2 finger protein ATL12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 192 bits (487), Expect = 7.82e-60
Identity = 92/150 (61.33%), Postives = 114/150 (76.00%), Query Frame = 0


Query: 4   PPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR-------QTAAAA 63
           PPP P L   +LS++DLDFLN AG+  LA+ I+YFIYT YEHKY  R       ++AA A
Sbjct: 3   PPPSPELSVDVLSTVDLDFLNFAGLFILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAATA 62

Query: 64  AGGGEERRAAASTAEMRTKLFQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHR 123
           A G        +TA + T+LFQYGERG+ G+NADCSICLDEF EG++CRMLPKCKH+FHR
Sbjct: 63  AVGSSGEDRGGATAVISTRLFQYGERGMVGQNADCSICLDEFVEGEICRMLPKCKHVFHR 122

Query: 124 FCIDQWLPNQPHCPLCRSPVRVRIVYSNQS 146
           FCIDQWLPN+ HCPLCRSPV VR +++++S
Sbjct: 123 FCIDQWLPNERHCPLCRSPVHVRFIFAHRS 152

[Close]

BLAST of MC03g0189 vs. NCBI nr
Match: XP_022964750.1 (RING-H2 finger protein ATL39-like [Cucurbita moschata])

HSP 1 Score: 191 bits (484), Expect = 1.97e-59
Identity = 92/148 (62.16%), Postives = 113/148 (76.35%), Query Frame = 0


Query: 4   PPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQT-----AAAAAG 63
           PPP P L   +LS++DLDFLN AG+  LA+ I+YFIYT YEHKY  R        +A   
Sbjct: 3   PPPSPELSVDVLSTVDLDFLNFAGLFILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAVGS 62

Query: 64  GGEERRAAASTAEMRTKLFQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFC 123
            GE+R  A  TA + T+LFQYGERG+ G+NADCSICLDEF EG++CRMLPKCKH+FHRFC
Sbjct: 63  SGEDRGGA--TAVISTRLFQYGERGMVGKNADCSICLDEFVEGEICRMLPKCKHVFHRFC 122

Query: 124 IDQWLPNQPHCPLCRSPVRVRIVYSNQS 146
           IDQWLPN+ HCPLCRSPV VR +++++S
Sbjct: 123 IDQWLPNERHCPLCRSPVHVRFIFAHRS 148

[Close]

BLAST of MC03g0189 vs. ExPASy TrEMBL
Match: A0A6J1I603 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469514 PE=3 SV=1)

HSP 1 Score: 198 bits (503), Expect = 1.39e-62
Identity = 98/152 (64.47%), Postives = 121/152 (79.61%), Query Frame = 0


Query: 4   PPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQR-------QTAAAA 63
           PPPPP L   +LS++DLDFLN AG+  LA+ I+YFIYT YEHKY  R       ++AA A
Sbjct: 3   PPPPPELSVDVLSTVDLDFLNFAGLFILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAATA 62

Query: 64  AGG--GEERRAAASTAEMRTKLFQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIF 123
           + G  GE+RR A  TA + T+LFQYGERG+EG+NADCSICLDEF EG++CRMLPKCKH+F
Sbjct: 63  SVGSSGEDRRWA--TAVISTRLFQYGERGMEGKNADCSICLDEFVEGEICRMLPKCKHVF 122

Query: 124 HRFCIDQWLPNQPHCPLCRSPVRVRIVYSNQS 146
           HRFCIDQWLPN+ HCPLCRSPV VR +++++S
Sbjct: 123 HRFCIDQWLPNERHCPLCRSPVHVRFIFAHRS 152

[Close]

BLAST of MC03g0189 vs. ExPASy TrEMBL
Match: A0A6J1HLQ2 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464741 PE=3 SV=1)

HSP 1 Score: 191 bits (484), Expect = 9.52e-60
Identity = 92/148 (62.16%), Postives = 113/148 (76.35%), Query Frame = 0


Query: 4   PPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQT-----AAAAAG 63
           PPP P L   +LS++DLDFLN AG+  LA+ I+YFIYT YEHKY  R        +A   
Sbjct: 3   PPPSPELSVDVLSTVDLDFLNFAGLFILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAVGS 62

Query: 64  GGEERRAAASTAEMRTKLFQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFC 123
            GE+R  A  TA + T+LFQYGERG+ G+NADCSICLDEF EG++CRMLPKCKH+FHRFC
Sbjct: 63  SGEDRGGA--TAVISTRLFQYGERGMVGKNADCSICLDEFVEGEICRMLPKCKHVFHRFC 122

Query: 124 IDQWLPNQPHCPLCRSPVRVRIVYSNQS 146
           IDQWLPN+ HCPLCRSPV VR +++++S
Sbjct: 123 IDQWLPNERHCPLCRSPVHVRFIFAHRS 148

[Close]

BLAST of MC03g0189 vs. ExPASy TrEMBL
Match: A0A5D3BEF0 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002260 PE=4 SV=1)

HSP 1 Score: 186 bits (471), Expect = 2.02e-57
Identity = 91/156 (58.33%), Postives = 114/156 (73.08%), Query Frame = 0


Query: 3   PPPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQ----------- 62
           PPPPP  LP   LS+LDLDFLN+AG+S+LA+M +YFI+TCYE K+  R            
Sbjct: 15  PPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQLPSV 74

Query: 63  ---TAAAAAGGGEERRAAASTAEMRTKLFQYGERG-IEGRNADCSICLDEFSEGQVCRML 122
               + A+  G   RR  +S A + T+LFQYG  G + G+NADCSICLDEF+EG++CRML
Sbjct: 75  TMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRML 134

Query: 123 PKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYS 143
           PKCKH+FHRFCIDQWLPN+ +CP+CRSPV VR+VYS
Sbjct: 135 PKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYS 170

[Close]

BLAST of MC03g0189 vs. ExPASy TrEMBL
Match: A0A5A7VKM2 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00570 PE=4 SV=1)

HSP 1 Score: 186 bits (471), Expect = 2.02e-57
Identity = 91/156 (58.33%), Postives = 114/156 (73.08%), Query Frame = 0


Query: 3   PPPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQ----------- 62
           PPPPP  LP   LS+LDLDFLN+AG+S+LA+M +YFI+TCYE K+  R            
Sbjct: 15  PPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGRLPSE 74

Query: 63  ---TAAAAAGGGEERRAAASTAEMRTKLFQYGERG-IEGRNADCSICLDEFSEGQVCRML 122
               + A+  G   RR  +S A + T+LFQYG  G + G+NADCSICLDEF+EG++CRML
Sbjct: 75  TMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRML 134

Query: 123 PKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYS 143
           PKCKH+FHRFCIDQWLPN+ +CP+CRSPV VR+VYS
Sbjct: 135 PKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYS 170

[Close]

BLAST of MC03g0189 vs. ExPASy TrEMBL
Match: A0A1S3C5T1 (RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103497235 PE=4 SV=1)

HSP 1 Score: 186 bits (471), Expect = 2.02e-57
Identity = 91/156 (58.33%), Postives = 114/156 (73.08%), Query Frame = 0


Query: 3   PPPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQ----------- 62
           PPPPP  LP   LS+LDLDFLN+AG+S+LA+M +YFI+TCYE K+  R            
Sbjct: 15  PPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGQLPSV 74

Query: 63  ---TAAAAAGGGEERRAAASTAEMRTKLFQYGERG-IEGRNADCSICLDEFSEGQVCRML 122
               + A+  G   RR  +S A + T+LFQYG  G + G+NADCSICLDEF+EG++CRML
Sbjct: 75  TMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRML 134

Query: 123 PKCKHIFHRFCIDQWLPNQPHCPLCRSPVRVRIVYS 143
           PKCKH+FHRFCIDQWLPN+ +CP+CRSPV VR+VYS
Sbjct: 135 PKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYS 170

[Close]

BLAST of MC03g0189 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 82.4 bits (202), Expect = 3.3e-16
Identity = 57/160 (35.62%), Postives = 79/160 (49.38%), Query Frame = 0


Query: 3   PPPPPPVLPSSILSSLDLDFLNIAGMSSLALMIVYFIYTCYEHKYSQRQTAAAAAGGG-- 62
           PPPPPP  P   LS L    + + G   L L +V+F+Y    H   QR+ +AA+   G  
Sbjct: 26  PPPPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYL---HITQQRRISAASVTPGDT 85

Query: 63  ---------EERRAA---------------ASTAEMRTKLFQYGERGIEGRNADCSICLD 122
                    EER  +               ++   +    F+ GE  I+G   +CS+CL+
Sbjct: 86  NQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIIDG--TECSVCLN 145

Query: 123 EFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV 137
           EF E +  R+LPKC H FH  CID WL +  +CPLCR+PV
Sbjct: 146 EFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPV 180

[Close]

BLAST of MC03g0189 vs. TAIR 10
Match: AT4G33565.1 (RING/U-box superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 4.3e-16
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 75  KLFQYGERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRS 134
           K+ QY ++       DCS+CL EF E +  R+LPKCKH FH +CID WL +  +CPLCR+
Sbjct: 201 KVCQYSKKDGVVEGTDCSVCLSEFEEEETLRLLPKCKHAFHLYCIDTWLRSHTNCPLCRA 260

Query: 135 PV 137
           P+
Sbjct: 261 PI 262

[Close]

BLAST of MC03g0189 vs. TAIR 10
Match: AT4G17905.1 (RING/U-box superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 6.8e-14
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 81  ERGIEGRNADCSICLDEFSEGQVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPVRV 139
           + G +    DCSICL EF+E +  R+LPKC H FH  CID+WL +  +CPLCR+ + V
Sbjct: 145 QNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIV 202

[Close]

BLAST of MC03g0189 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-13
Identity = 55/177 (31.07%), Postives = 84/177 (47.46%), Query Frame = 0


Query: 3   PPPPPPVL----PSSILSSLDLDFLNIAGMSSLALMIV--YFIYTCYEHKYSQRQTAAAA 62
           PPPPP        SS  SS     + + G+ + AL++V  Y + + Y H++ Q  ++   
Sbjct: 35  PPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTSSSETL 94

Query: 63  AGGGEERRAAASTAEMRTK-------------LFQY--GERGIEGRNADCSICLDEFSEG 122
                     +ST  + T              +++Y  G+  ++G  +DCS+CL EF E 
Sbjct: 95  NLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDG--SDCSVCLSEFEEN 154

Query: 123 QVCRMLPKCKHIFHRFCIDQWLPNQPHCPLCRSPV------------RVRIVYSNQS 147
           +  R+LPKC H FH  CID WL +  +CPLCR+ V             V +V +NQS
Sbjct: 155 ESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTASVGQNVSVVVANQS 209

[Close]

BLAST of MC03g0189 vs. TAIR 10
Match: AT4G28890.1 (RING/U-box superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 9.9e-13
Identity = 34/90 (37.78%), Postives = 49/90 (54.44%), Query Frame = 0


Query: 47  YSQRQTAAAAAGGGEERRAAASTAEMRTKLFQYGERGIEGRNADCSICLDEFSEGQVCRM 106
           +  R TA++    G ++ A  S    R    +  ++G+     DCS+CL +F   ++ R+
Sbjct: 84  FFNRSTASSDRFSGLDKTAIESLPLFRFSALKGSKQGL-----DCSVCLSKFESVEILRL 143

Query: 107 LPKCKHIFHRFCIDQWLPNQPHCPLCRSPV 137
           LPKC+H FH  CIDQWL     CPLCR  V
Sbjct: 144 LPKCRHAFHIGCIDQWLEQHATCPLCRDRV 168

The following BLAST results are available for this feature:

BLAST of MC03g0189 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LX93	4.6e-15	35.63	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
P0C041	9.6e-13	50.00	Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 P...	[more]
Q7XLY8	2.8e-12	55.32	E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=3994...	[more]
Q9LF64	2.8e-12	31.07	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q9LZJ6	4.8e-12	46.77	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1	[more]

BLAST of MC03g0189 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895799.1	4.18e-64	64.38	E3 ubiquitin-protein ligase RING1-like [Benincasa hispida]	[more]
XP_022970579.1	2.87e-62	64.47	RING-H2 finger protein ATL14-like [Cucurbita maxima]	[more]
XP_023520573.1	5.51e-60	61.33	RING-H2 finger protein ATL51-like [Cucurbita pepo subsp. pepo]	[more]
KAG6583430.1	7.82e-60	61.33	putative RING-H2 finger protein ATL12, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022964750.1	1.97e-59	62.16	RING-H2 finger protein ATL39-like [Cucurbita moschata]	[more]

BLAST of MC03g0189 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I603	1.39e-62	64.47	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469514 P...	[more]
A0A6J1HLQ2	9.52e-60	62.16	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464741...	[more]
A0A5D3BEF0	2.02e-57	58.33	RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VKM2	2.02e-57	58.33	RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A1S3C5T1	2.02e-57	58.33	RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103497235 PE=4 S...	[more]

BLAST of MC03g0189 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10380.1	3.3e-16	35.63	RING/U-box superfamily protein	[more]
AT4G33565.1	4.3e-16	50.00	RING/U-box superfamily protein	[more]
AT4G17905.1	6.8e-14	50.00	RING/U-box superfamily protein	[more]
AT5G17600.1	2.0e-13	31.07	RING/U-box superfamily protein	[more]
AT4G28890.1	9.9e-13	37.78	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 91..132 e-value: 6.0E-7 score: 39.1
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 90..133 e-value: 6.9E-13 score: 48.7
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 91..133 score: 12.725326
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 44..138 e-value: 8.2E-21 score: 75.5
None	No IPR available	PANTHER	PTHR45676:SF73	E3 UBIQUITIN-PROTEIN LIGASE RING1-RELATED	coord: 15..137
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 90..133 e-value: 3.2798E-16 score: 65.7861
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 84..139
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 15..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC03g0189.1	MC03g0189.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane