MC03g0184 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC03g0184
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	RING-H2 finger protein ATL14-like
Location	MC03: 3517950 .. 3518087 (-)
RNA-Seq Expression	MC03g0184
Synteny	MC03g0184

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCGCGATCTGCATTGAGGGATTTGCGGAGGAAGAGAAGTGTGGAGTTATTGAAAATTGCGGCCATTTTTTCCATAAGGATTGTATCGATCGGTGGCTGAAGATTGAGAGCCGTTGCCCACTCTGCCGCTGTTCTATT

mRNA sequence

TGCGCGATCTGCATTGAGGGATTTGCGGAGGAAGAGAAGTGTGGAGTTATTGAAAATTGCGGCCATTTTTTCCATAAGGATTGTATCGATCGGTGGCTGAAGATTGAGAGCCGTTGCCCACTCTGCCGCTGTTCTATT

Coding sequence (CDS)

TGCGCGATCTGCATTGAGGGATTTGCGGAGGAAGAGAAGTGTGGAGTTATTGAAAATTGCGGCCATTTTTTCCATAAGGATTGTATCGATCGGTGGCTGAAGATTGAGAGCCGTTGCCCACTCTGCCGCTGTTCTATT

Protein sequence

CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCRCSI

Homology

[Close]

BLAST of MC03g0184 vs. ExPASy Swiss-Prot
Match: Q9SRM0 (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.8e-11
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 1   CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCRCSI 47
           C IC+ GF E EK  V+  C H +H +C+DRWLK ES CPLCR SI
Sbjct: 107 CCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSI 152

[Close]

BLAST of MC03g0184 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.1e-10
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 1   CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCRCSI 47
           C++C+  F +EEK  +I NC H FH DCID WL+  + CPLCR  +
Sbjct: 138 CSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRV 183

[Close]

BLAST of MC03g0184 vs. ExPASy Swiss-Prot
Match: P93823 (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.1e-10
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 1   CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCRCSI 47
           C++C+  F E+EK  +I NC H FH DCID WL+  + CPLCR S+
Sbjct: 134 CSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSV 179

[Close]

BLAST of MC03g0184 vs. ExPASy Swiss-Prot
Match: Q8GW38 (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.7e-09
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 1   CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR 44
           CA+C+  F+E++K  ++ NC H FH DCID WL   S CPLCR
Sbjct: 144 CAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCR 186

[Close]

BLAST of MC03g0184 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.7e-09
Identity = 21/46 (45.65%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 1   CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCRCSI 47
           C++C+  F E+++  V+  CGH FH DCID W +  S CPLCR  +
Sbjct: 113 CSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPV 158

[Close]

BLAST of MC03g0184 vs. NCBI nr
Match: XP_022158253.1 (RING-H2 finger protein ATL14-like [Momordica charantia])

HSP 1 Score: 108 bits (271), Expect = 6.53e-29
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1   CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCRCSI 46
           CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCRCSI
Sbjct: 89  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCRCSI 134

[Close]

BLAST of MC03g0184 vs. NCBI nr
Match: XP_031742489.1 (RING-H2 finger protein ATL1-like [Cucumis sativus] >KAE8653253.1 hypothetical protein Csa_019970 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 2.34e-23
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 1   CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCRCSI 46
           CAICIEGF EEE CGVIENCGHFFH+DCI+RWL+IE RCPLCRC +
Sbjct: 113 CAICIEGFGEEEICGVIENCGHFFHRDCINRWLRIERRCPLCRCFV 158

[Close]

BLAST of MC03g0184 vs. NCBI nr
Match: XP_016902103.1 (PREDICTED: RING-H2 finger protein ATL52-like [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 2.31e-20
Identity = 33/46 (71.74%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCRCSI 46
          CAICIE F +EE CGV+E+CGH FH+DC+D+WL+IESRCPLCRC +
Sbjct: 53 CAICIEEFEDEEICGVVESCGHCFHEDCMDQWLRIESRCPLCRCLV 98

[Close]

BLAST of MC03g0184 vs. NCBI nr
Match: KAA0067736.1 (RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 7.34e-20
Identity = 33/46 (71.74%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1   CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCRCSI 46
           CAICIE F +EE CGV+E+CGH FH+DC+D+WL+IESRCPLCRC +
Sbjct: 97  CAICIEEFEDEEICGVVESCGHCFHEDCMDQWLRIESRCPLCRCLV 142

[Close]

BLAST of MC03g0184 vs. NCBI nr
Match: TYJ97407.1 (RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 7.34e-20
Identity = 33/46 (71.74%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1   CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCRCSI 46
           CAICIE F +EE CGV+E+CGH FH+DC+D+WL+IESRCPLCRC +
Sbjct: 97  CAICIEEFEDEEICGVVESCGHCFHEDCMDQWLRIESRCPLCRCLV 142

[Close]

BLAST of MC03g0184 vs. ExPASy TrEMBL
Match: A0A6J1DVK4 (RING-H2 finger protein ATL14-like OS=Momordica charantia OX=3673 GN=LOC111024788 PE=4 SV=1)

HSP 1 Score: 108 bits (271), Expect = 3.16e-29
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 1   CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCRCSI 46
           CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCRCSI
Sbjct: 89  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCRCSI 134

[Close]

BLAST of MC03g0184 vs. ExPASy TrEMBL
Match: A0A1S4E1K2 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC107991538 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.12e-20
Identity = 33/46 (71.74%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1  CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCRCSI 46
          CAICIE F +EE CGV+E+CGH FH+DC+D+WL+IESRCPLCRC +
Sbjct: 53 CAICIEEFEDEEICGVVESCGHCFHEDCMDQWLRIESRCPLCRCLV 98

[Close]

BLAST of MC03g0184 vs. ExPASy TrEMBL
Match: A0A5D3BE50 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002270 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.55e-20
Identity = 33/46 (71.74%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1   CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCRCSI 46
           CAICIE F +EE CGV+E+CGH FH+DC+D+WL+IESRCPLCRC +
Sbjct: 97  CAICIEEFEDEEICGVVESCGHCFHEDCMDQWLRIESRCPLCRCLV 142

[Close]

BLAST of MC03g0184 vs. ExPASy TrEMBL
Match: A0A5A7VMH1 (RING-H2 finger protein ATL52-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00560 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.55e-20
Identity = 33/46 (71.74%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 1   CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCRCSI 46
           CAICIE F +EE CGV+E+CGH FH+DC+D+WL+IESRCPLCRC +
Sbjct: 97  CAICIEEFEDEEICGVVESCGHCFHEDCMDQWLRIESRCPLCRCLV 142

[Close]

BLAST of MC03g0184 vs. ExPASy TrEMBL
Match: A0A6J1HJU0 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464742 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.89e-20
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1   CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCRCSI 46
           CAICIEGF EEE CGV++ CGH FHK CID+WL+I SRCPLCRC I
Sbjct: 104 CAICIEGFEEEEICGVLDRCGHCFHKVCIDQWLRIGSRCPLCRCLI 149

[Close]

BLAST of MC03g0184 vs. TAIR 10
Match: AT3G11110.1 (RING/U-box superfamily protein )

HSP 1 Score: 68.2 bits (165), Expect = 2.0e-12
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 1   CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCRCSI 47
           C IC+ GF E EK  V+  C H +H +C+DRWLK ES CPLCR SI
Sbjct: 107 CCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSI 152

[Close]

BLAST of MC03g0184 vs. TAIR 10
Match: AT1G04360.1 (RING/U-box superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 2.9e-11
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 1   CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCRCSI 47
           C++C+  F E+EK  +I NC H FH DCID WL+  + CPLCR S+
Sbjct: 134 CSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSV 179

[Close]

BLAST of MC03g0184 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 2.9e-11
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 1   CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCRCSI 47
           C++C+  F +EEK  +I NC H FH DCID WL+  + CPLCR  +
Sbjct: 138 CSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRV 183

[Close]

BLAST of MC03g0184 vs. TAIR 10
Match: AT1G23980.1 (RING/U-box superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 1.9e-10
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 1   CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCR 44
           CA+C+  F+E++K  ++ NC H FH DCID WL   S CPLCR
Sbjct: 144 CAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCR 186

[Close]

BLAST of MC03g0184 vs. TAIR 10
Match: AT3G62690.1 (AtL5 )

HSP 1 Score: 61.6 bits (148), Expect = 1.9e-10
Identity = 21/46 (45.65%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 1   CAICIEGFAEEEKCGVIENCGHFFHKDCIDRWLKIESRCPLCRCSI 47
           C++C+  F E+++  V+  CGH FH DCID W +  S CPLCR  +
Sbjct: 113 CSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPV 158

The following BLAST results are available for this feature:

BLAST of MC03g0184 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRM0	2.8e-11	58.70	RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1	[more]
Q9LSW9	4.1e-10	50.00	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
P93823	4.1e-10	52.17	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1	[more]
Q8GW38	2.7e-09	53.49	RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1	[more]
Q9LZJ6	2.7e-09	45.65	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1	[more]

BLAST of MC03g0184 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158253.1	6.53e-29	100.00	RING-H2 finger protein ATL14-like [Momordica charantia]	[more]
XP_031742489.1	2.34e-23	82.61	RING-H2 finger protein ATL1-like [Cucumis sativus] >KAE8653253.1 hypothetical pr...	[more]
XP_016902103.1	2.31e-20	71.74	PREDICTED: RING-H2 finger protein ATL52-like [Cucumis melo]	[more]
KAA0067736.1	7.34e-20	71.74	RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]	[more]
TYJ97407.1	7.34e-20	71.74	RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]	[more]

BLAST of MC03g0184 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVK4	3.16e-29	100.00	RING-H2 finger protein ATL14-like OS=Momordica charantia OX=3673 GN=LOC111024788...	[more]
A0A1S4E1K2	1.12e-20	71.74	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC107991538 PE=3 ...	[more]
A0A5D3BE50	3.55e-20	71.74	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A5A7VMH1	3.55e-20	71.74	RING-H2 finger protein ATL52-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A6J1HJU0	8.89e-20	76.09	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464742...	[more]

BLAST of MC03g0184 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11110.1	2.0e-12	58.70	RING/U-box superfamily protein	[more]
AT1G04360.1	2.9e-11	52.17	RING/U-box superfamily protein	[more]
AT5G43420.1	2.9e-11	50.00	RING/U-box superfamily protein	[more]
AT1G23980.1	1.9e-10	53.49	RING/U-box superfamily protein	[more]
AT3G62690.1	1.9e-10	45.65	AtL5	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 1..42 e-value: 1.2E-6 score: 38.1
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 1..43 e-value: 5.8E-14 score: 52.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 1..43 score: 13.241681
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 1..46 e-value: 2.0E-16 score: 61.3
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 1..44
None	No IPR available	PANTHER	PTHR14155:SF550	RING-H2 FINGER PROTEIN ATL40	coord: 1..44
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 1..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC03g0184.1	MC03g0184.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane