MC03g0078 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC03g0078
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	PMD domain-containing protein
Location	MC03: 1100697 .. 1100975 (+)
RNA-Seq Expression	MC03g0078
Synteny	MC03g0078

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAGACGAGTGACGATGATGGCTATAGAAGACTATGCTGGTCCAGGGTCTAATCCAAAACACACACCACGGCGACCACCAGTGGTGGCTACAGAAGACTATGATGGTCCAGGGTCTAATCCAAAGCACACGCCACGACCACCGCCAATGGTGGCTACAAAAGACTATGCTGGTCCAGGATCTAATCCAAAGCACACACCGCGGCGACAACCAATGGTGGCTACAGAAGACTATGCTGGTCTAGGATCTAATCCAAAGCACACACCGTGGCGACCACCA

mRNA sequence

GAAAGACGAGTGACGATGATGGCTATAGAAGACTATGCTGGTCCAGGGTCTAATCCAAAACACACACCACGGCGACCACCAGTGGTGGCTACAGAAGACTATGATGGTCCAGGGTCTAATCCAAAGCACACGCCACGACCACCGCCAATGGTGGCTACAAAAGACTATGCTGGTCCAGGATCTAATCCAAAGCACACACCGCGGCGACAACCAATGGTGGCTACAGAAGACTATGCTGGTCTAGGATCTAATCCAAAGCACACACCGTGGCGACCACCA

Coding sequence (CDS)

GAAAGACGAGTGACGATGATGGCTATAGAAGACTATGCTGGTCCAGGGTCTAATCCAAAACACACACCACGGCGACCACCAGTGGTGGCTACAGAAGACTATGATGGTCCAGGGTCTAATCCAAAGCACACGCCACGACCACCGCCAATGGTGGCTACAAAAGACTATGCTGGTCCAGGATCTAATCCAAAGCACACACCGCGGCGACAACCAATGGTGGCTACAGAAGACTATGCTGGTCTAGGATCTAATCCAAAGCACACACCGTGGCGACCACCA

Protein sequence

ERRVTMMAIEDYAGPGSNPKHTPRRPPVVATEDYDGPGSNPKHTPRPPPMVATKDYAGPGSNPKHTPRRQPMVATEDYAGLGSNPKHTPWRPP

Homology

[Close]

BLAST of MC03g0078 vs. NCBI nr
Match: KAB8099948.1 (hypothetical protein EE612_030285, partial [Oryza sativa])

HSP 1 Score: 81.3 bits (199), Expect = 3.46e-17
Identity = 49/133 (36.84%), Postives = 62/133 (46.62%), Query Frame = 0


Query: 4   VTMMAIEDYAGPGSNPKHTPRRPPV---------------VATEDYDGPGSNPKHTPRPP 63
            T + + DY  PG+NP+H P+RPP                V   DY  PG+NP+H P+ P
Sbjct: 3   TTDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAAATNNVEVNDYPAPGANPRHNPKSP 62

Query: 64  P--------MVAT------KDYAGPGSNPKHTPRRQP--------MVAT------EDYAG 93
           P        MVA        DY  PG+NP+H P+R P        MVA        DY  
Sbjct: 63  PGREMSVQGMVAAATDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAATTDVEVNDYLA 122

[Close]

BLAST of MC03g0078 vs. NCBI nr
Match: AAT01334.1 (hypothetical protein [Oryza sativa Japonica Group] >AAT77275.1 hypothetical protein [Oryza sativa Japonica Group])

HSP 1 Score: 81.3 bits (199), Expect = 1.15e-16
Identity = 49/133 (36.84%), Postives = 62/133 (46.62%), Query Frame = 0


Query: 4   VTMMAIEDYAGPGSNPKHTPRRPPV---------------VATEDYDGPGSNPKHTPRPP 63
            T + + DY  PG+NP+H P+RPP                V   DY  PG+NP+H P+ P
Sbjct: 55  TTDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAAATNNVEVNDYPAPGANPRHNPKSP 114

Query: 64  P--------MVAT------KDYAGPGSNPKHTPRRQP--------MVAT------EDYAG 93
           P        MVA        DY  PG+NP+H P+R P        MVA        DY  
Sbjct: 115 PGREMSVQGMVAAATDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAATTDVEVNDYLA 174

[Close]

BLAST of MC03g0078 vs. NCBI nr
Match: EEE64166.1 (hypothetical protein OsJ_18998 [Oryza sativa Japonica Group] >BAS94625.1 Os05g0487100 [Oryza sativa Japonica Group])

HSP 1 Score: 81.3 bits (199), Expect = 1.19e-16
Identity = 49/133 (36.84%), Postives = 62/133 (46.62%), Query Frame = 0


Query: 4   VTMMAIEDYAGPGSNPKHTPRRPPV---------------VATEDYDGPGSNPKHTPRPP 63
            T + + DY  PG+NP+H P+RPP                V   DY  PG+NP+H P+ P
Sbjct: 57  TTDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAAATNNVEVNDYPAPGANPRHNPKSP 116

Query: 64  P--------MVAT------KDYAGPGSNPKHTPRRQP--------MVAT------EDYAG 93
           P        MVA        DY  PG+NP+H P+R P        MVA        DY  
Sbjct: 117 PGREMSVQGMVAAATDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAATTDVEVNDYLA 176

[Close]

BLAST of MC03g0078 vs. NCBI nr
Match: XP_015639078.1 (circumsporozoite protein [Oryza sativa Japonica Group] >KAF2931362.1 hypothetical protein DAI22_05g213100 [Oryza sativa Japonica Group])

HSP 1 Score: 81.3 bits (199), Expect = 1.30e-16
Identity = 49/133 (36.84%), Postives = 62/133 (46.62%), Query Frame = 0


Query: 4   VTMMAIEDYAGPGSNPKHTPRRPPV---------------VATEDYDGPGSNPKHTPRPP 63
            T + + DY  PG+NP+H P+RPP                V   DY  PG+NP+H P+ P
Sbjct: 61  TTDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAAATNNVEVNDYPAPGANPRHNPKSP 120

Query: 64  P--------MVAT------KDYAGPGSNPKHTPRRQP--------MVAT------EDYAG 93
           P        MVA        DY  PG+NP+H P+R P        MVA        DY  
Sbjct: 121 PGREMSVQGMVAAATDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAATTDVEVNDYLA 180

[Close]

BLAST of MC03g0078 vs. NCBI nr
Match: XP_038895781.1 (circumsporozoite protein-like [Benincasa hispida])

HSP 1 Score: 80.1 bits (196), Expect = 2.23e-16
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 1   ERRVTMMAIEDYAGPGSNPKHTPRRPPVVATEDYDGPGSNPKHTPRPPPMVATKDYAGPG 60
           E +   + I DYA PG+NP+H P +PP++   DY  PG+NP+H P   PM+   DY  PG
Sbjct: 29  ESQNNTITINDYADPGANPRHDPNQPPMMIN-DYADPGANPRHDPNQTPMMIN-DYTDPG 88

Query: 61  SNPKHTPRRQPMVATEDYAGLGSNPKHTPWRPP 93
           +NP+H P + PM+         +NP+H P +PP
Sbjct: 89  ANPRHDPNQPPMMINR------ANPRHDPNQPP 113

[Close]

BLAST of MC03g0078 vs. ExPASy TrEMBL
Match: Q75KZ2 (Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OJ1004_E02.10 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.55e-17
Identity = 49/133 (36.84%), Postives = 62/133 (46.62%), Query Frame = 0


Query: 4   VTMMAIEDYAGPGSNPKHTPRRPPV---------------VATEDYDGPGSNPKHTPRPP 63
            T + + DY  PG+NP+H P+RPP                V   DY  PG+NP+H P+ P
Sbjct: 55  TTDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAAATNNVEVNDYPAPGANPRHNPKSP 114

Query: 64  P--------MVAT------KDYAGPGSNPKHTPRRQP--------MVAT------EDYAG 93
           P        MVA        DY  PG+NP+H P+R P        MVA        DY  
Sbjct: 115 PGREMSVQGMVAAATDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAATTDVEVNDYLA 174

[Close]

BLAST of MC03g0078 vs. ExPASy TrEMBL
Match: A0A0N7KKZ9 (Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_18998 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.79e-17
Identity = 49/133 (36.84%), Postives = 62/133 (46.62%), Query Frame = 0


Query: 4   VTMMAIEDYAGPGSNPKHTPRRPPV---------------VATEDYDGPGSNPKHTPRPP 63
            T + + DY  PG+NP+H P+RPP                V   DY  PG+NP+H P+ P
Sbjct: 57  TTDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAAATNNVEVNDYPAPGANPRHNPKSP 116

Query: 64  P--------MVAT------KDYAGPGSNPKHTPRRQP--------MVAT------EDYAG 93
           P        MVA        DY  PG+NP+H P+R P        MVA        DY  
Sbjct: 117 PGREMSVQGMVAAATDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAATTDVEVNDYLA 176

[Close]

BLAST of MC03g0078 vs. ExPASy TrEMBL
Match: B9FKV0 (Os05g0487100 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0487100 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.79e-17
Identity = 49/133 (36.84%), Postives = 62/133 (46.62%), Query Frame = 0


Query: 4   VTMMAIEDYAGPGSNPKHTPRRPPV---------------VATEDYDGPGSNPKHTPRPP 63
            T + + DY  PG+NP+H P+RPP                V   DY  PG+NP+H P+ P
Sbjct: 57  TTDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAAATNNVEVNDYPAPGANPRHNPKSP 116

Query: 64  P--------MVAT------KDYAGPGSNPKHTPRRQP--------MVAT------EDYAG 93
           P        MVA        DY  PG+NP+H P+R P        MVA        DY  
Sbjct: 117 PGREMSVQGMVAAATDVEVNDYPAPGANPRHNPKRPPGREMSVQGMVAATTDVEVNDYLA 176

[Close]

BLAST of MC03g0078 vs. ExPASy TrEMBL
Match: A0A4D6MDP1 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g3283 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.77e-14
Identity = 44/95 (46.32%), Postives = 50/95 (52.63%), Query Frame = 0


Query: 9   IEDYAGPGSNPKHTPRRPPV------VATEDYDGPGSNPKHTPRPPPMV----ATKDYAG 68
           ++DY G G+NPKH P  PP          +DY G GSNPKH P PP  +       DYAG
Sbjct: 115 VDDYPGTGANPKHKP--PPSRDLNDHFEVDDYPGTGSNPKHKPPPPRDLNNHYEVDDYAG 174

Query: 69  PGSNPKHTPRR----QPMVATEDYAGLGSNPKHTP 89
            GSNPKH P            +DY G GSNPKH P
Sbjct: 175 TGSNPKHKPPPPRDLNDHYEVDDYPGTGSNPKHKP 207

[Close]

BLAST of MC03g0078 vs. ExPASy TrEMBL
Match: A0A0E0DTA0 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.02e-12
Identity = 37/96 (38.54%), Postives = 48/96 (50.00%), Query Frame = 0


Query: 4   VTMMAIEDYAGPGSNPKHTPRRPP---------VVAT-----EDYDGPGSNPKHTPRPPP 63
            T + + DY  PG+NP+H P+RPP         V AT      DY  PG+NP+H P+ PP
Sbjct: 90  ATDVEVNDYPAPGANPRHNPKRPPGREMSVLGTVAATTNVEVNDYPAPGANPRHNPKRPP 149

Query: 64  --------------MVATKDYAGPGSNPKHTPRRQP 71
                          V   DY GPG+NP+H P+R P
Sbjct: 150 GREMFAQGMAAATTNVEVNDYPGPGANPRHNPKRPP 185

The following BLAST results are available for this feature:

BLAST of MC03g0078 vs.


Match Name	E-value	Identity	Description

BLAST of MC03g0078 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB8099948.1	3.46e-17	36.84	hypothetical protein EE612_030285, partial [Oryza sativa]	[more]
AAT01334.1	1.15e-16	36.84	hypothetical protein [Oryza sativa Japonica Group] >AAT77275.1 hypothetical prot...	[more]
EEE64166.1	1.19e-16	36.84	hypothetical protein OsJ_18998 [Oryza sativa Japonica Group] >BAS94625.1 Os05g04...	[more]
XP_015639078.1	1.30e-16	36.84	circumsporozoite protein [Oryza sativa Japonica Group] >KAF2931362.1 hypothetica...	[more]
XP_038895781.1	2.23e-16	41.94	circumsporozoite protein-like [Benincasa hispida]	[more]

BLAST of MC03g0078 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q75KZ2	5.55e-17	36.84	Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OJ1004_E02.1...	[more]
A0A0N7KKZ9	5.79e-17	36.84	Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_18998 PE...	[more]
B9FKV0	5.79e-17	36.84	Os05g0487100 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0487100 PE...	[more]
A0A4D6MDP1	5.77e-14	46.32	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g3283 PE=4 SV=1	[more]
A0A0E0DTA0	3.02e-12	38.54	Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1	[more]

BLAST of MC03g0078 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..93
None	No IPR available	PANTHER	PTHR34467	TRANSMEMBRANE PROTEIN	coord: 51..71 coord: 2..27 coord: 29..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC03g0078.1	MC03g0078.1	mRNA