MC03g0021 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC03g0021
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Epidermal patterning factor-like protein
Location	MC03: 285923 .. 286093 (+)
RNA-Seq Expression	MC03g0021
Synteny	MC03g0021

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAGAAGAGGGCCTGGATCGTCGCCGCCTCAGTGCGCCGCAAAGTGCGGGACCTGCACGCCGTGCAAGCTGGTTCTTGCGCGGGTGCGGGTGCCGCCGAGAGCTCCGATGACGGCGGACTACTATCCCCAAGCCTGGAGATGCAAATGCAGGAACAAGCTGTACATACCC

mRNA sequence

GGAAGAAGAGGGCCTGGATCGTCGCCGCCTCAGTGCGCCGCAAAGTGCGGGACCTGCACGCCGTGCAAGCTGGTTCTTGCGCGGGTGCGGGTGCCGCCGAGAGCTCCGATGACGGCGGACTACTATCCCCAAGCCTGGAGATGCAAATGCAGGAACAAGCTGTACATACCC

Coding sequence (CDS)

GGAAGAAGAGGGCCTGGATCGTCGCCGCCTCAGTGCGCCGCAAAGTGCGGGACCTGCACGCCGTGCAAGCTGGTTCTTGCGCGGGTGCGGGTGCCGCCGAGAGCTCCGATGACGGCGGACTACTATCCCCAAGCCTGGAGATGCAAATGCAGGAACAAGCTGTACATACCC

Protein sequence

GRRGPGSSPPQCAAKCGTCTPCKLVLARVRVPPRAPMTADYYPQAWRCKCRNKLYIP

Homology

[Close]

BLAST of MC03g0021 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.5e-17
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 3   RGPGSSPPQCAAKCGTCTPCKLVLARVRVPPRAPMTADYYPQAWRCKCRNKLYIP 58
           RG GSSPP+C++KCG CTPCK V   V VPP  P+TA+YYP+AWRCKC NKLY+P
Sbjct: 104 RGLGSSPPRCSSKCGRCTPCKPV--HVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 156

[Close]

BLAST of MC03g0021 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.2e-13
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 4   GPGSSPPQCAAKCGTCTPCKLVLARVRVPPRAPMTADYYPQAWRCKCRNKLYIP 58
           GPGSSPP C +KCG C PCK V   V + P   M  +YYP+AWRCKC NKL++P
Sbjct: 58  GPGSSPPTCRSKCGKCQPCKPV--HVPIQPGLSMPLEYYPEAWRCKCGNKLFMP 109

[Close]

BLAST of MC03g0021 vs. ExPASy Swiss-Prot
Match: Q9LUH9 (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-12
Identity = 31/54 (57.41%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 4   GPGSSPPQCAAKCGTCTPCKLVLARVRVPPRAPMTADYYPQAWRCKCRNKLYIP 58
           GPGS PP C  KCG C PCK V   V + P   M  +YYP+AWRCKC NKL++P
Sbjct: 56  GPGSVPPMCRLKCGKCEPCKAV--HVPIQPGLIMPLEYYPEAWRCKCGNKLFMP 107

[Close]

BLAST of MC03g0021 vs. ExPASy Swiss-Prot
Match: Q7M1E7 (Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-07
Identity = 27/51 (52.94%), Postives = 29/51 (56.86%), Query Frame = 0


Query: 7   SSPPQCAAKCGTCTPCKLVLARVRVPPRAPMTADYYPQAWRCKCRNKLYIP 58
           SSPP C  KC  C PCK  L  + V P  P   DYYPQ W C C NK+Y P
Sbjct: 468 SSPPNCKNKCKGCQPCKPKL--IIVHPNKPQ--DYYPQKWVCSCHNKIYNP 514

[Close]

BLAST of MC03g0021 vs. ExPASy Swiss-Prot
Match: Q9FY19 (Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-07
Identity = 27/51 (52.94%), Postives = 29/51 (56.86%), Query Frame = 0


Query: 7   SSPPQCAAKCGTCTPCKLVLARVRVPPRAPMTADYYPQAWRCKCRNKLYIP 58
           SSPP C  KC  C PCK  L  + V P  P   DYYPQ W C C NK+Y P
Sbjct: 461 SSPPNCKNKCKGCQPCKPKL--IIVHPNQP--EDYYPQRWVCSCHNKIYNP 507

[Close]

BLAST of MC03g0021 vs. NCBI nr
Match: XP_022154900.1 (EPIDERMAL PATTERNING FACTOR-like protein 5 [Momordica charantia])

HSP 1 Score: 100 bits (250), Expect = 1.07e-25
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 1   GRRGPGSSPPQCAAKCGTCTPCKLVLARVRVPPRAPMTADYYPQAWRCKCRNKLYIP 57
           G+ GPGSSPP+CA+KCG CTPCK V   V VPP  P+TADYYP+AWRCKCRNKLY+P
Sbjct: 69  GQGGPGSSPPRCASKCGNCTPCKPVHVAVPVPPGTPVTADYYPEAWRCKCRNKLYMP 125

[Close]

BLAST of MC03g0021 vs. NCBI nr
Match: CAA2951276.1 (EPIDERMAL PATTERNING FACTOR 6 [Olea europaea subsp. europaea])

HSP 1 Score: 91.7 bits (226), Expect = 3.72e-22
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 4   GPGSSPPQCAAKCGTCTPCKLVLARVRVPPRAPMTADYYPQAWRCKCRNKLYIP 57
           GPGSSPP+C +KCG CTPCKLV   V VPP  P+T +YYP+AWRCKC NKLY+P
Sbjct: 65  GPGSSPPRCTSKCGRCTPCKLV--HVPVPPGTPVTTEYYPEAWRCKCGNKLYVP 116

[Close]

BLAST of MC03g0021 vs. NCBI nr
Match: KAF3454817.1 (hypothetical protein FNV43_RR05265 [Rhamnella rubrinervis])

HSP 1 Score: 90.5 bits (223), Expect = 3.95e-22
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 4  GPGSSPPQCAAKCGTCTPCKLVLARVRVPPRAPMTADYYPQAWRCKCRNKLYIP 57
          GPGSSPP+C +KCG+CTPCK V   V VPP  P+TA+YYP+AWRCKC NKLY+P
Sbjct: 29 GPGSSPPRCTSKCGSCTPCKPV--HVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 80

[Close]

BLAST of MC03g0021 vs. NCBI nr
Match: KAF5930719.1 (hypothetical protein HYC85_031592 [Camellia sinensis])

HSP 1 Score: 91.3 bits (225), Expect = 4.73e-22
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 4   GPGSSPPQCAAKCGTCTPCKLVLARVRVPPRAPMTADYYPQAWRCKCRNKLYIP 57
           GPGSSPP+CA+KCG CTPCK V   V VPP  P+TA+YYP+AWRCKC NKLY+P
Sbjct: 61  GPGSSPPRCASKCGKCTPCKPV--HVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 112

[Close]

BLAST of MC03g0021 vs. NCBI nr
Match: XP_016755813.1 (EPIDERMAL PATTERNING FACTOR-like protein 5 isoform X7 [Gossypium hirsutum])

HSP 1 Score: 91.3 bits (225), Expect = 5.28e-22
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 4   GPGSSPPQCAAKCGTCTPCKLVLARVRVPPRAPMTADYYPQAWRCKCRNKLYIP 57
           GPGSSPP+CA+KCG CTPCK V   V VPP  P+TA+YYP+AWRCKC NKLY+P
Sbjct: 65  GPGSSPPRCASKCGKCTPCKPV--HVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 116

[Close]

BLAST of MC03g0021 vs. ExPASy TrEMBL
Match: A0A6J1DKY2 (Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC111022045 PE=3 SV=1)

HSP 1 Score: 100 bits (250), Expect = 5.19e-26
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 1   GRRGPGSSPPQCAAKCGTCTPCKLVLARVRVPPRAPMTADYYPQAWRCKCRNKLYIP 57
           G+ GPGSSPP+CA+KCG CTPCK V   V VPP  P+TADYYP+AWRCKCRNKLY+P
Sbjct: 69  GQGGPGSSPPRCASKCGNCTPCKPVHVAVPVPPGTPVTADYYPEAWRCKCRNKLYMP 125

[Close]

BLAST of MC03g0021 vs. ExPASy TrEMBL
Match: A0A7J7FR70 (Epidermal patterning factor-like protein OS=Camellia sinensis OX=4442 GN=HYC85_031592 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.29e-22
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 4   GPGSSPPQCAAKCGTCTPCKLVLARVRVPPRAPMTADYYPQAWRCKCRNKLYIP 57
           GPGSSPP+CA+KCG CTPCK V   V VPP  P+TA+YYP+AWRCKC NKLY+P
Sbjct: 61  GPGSSPPRCASKCGKCTPCKPV--HVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 112

[Close]

BLAST of MC03g0021 vs. ExPASy TrEMBL
Match: A0A1U8PZM9 (Epidermal patterning factor-like protein OS=Gossypium hirsutum OX=3635 GN=LOC107963826 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.55e-22
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 4   GPGSSPPQCAAKCGTCTPCKLVLARVRVPPRAPMTADYYPQAWRCKCRNKLYIP 57
           GPGSSPP+CA+KCG CTPCK V   V VPP  P+TA+YYP+AWRCKC NKLY+P
Sbjct: 65  GPGSSPPRCASKCGKCTPCKPV--HVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 116

[Close]

BLAST of MC03g0021 vs. ExPASy TrEMBL
Match: A0A6P3Z507 (Epidermal patterning factor-like protein OS=Ziziphus jujuba OX=326968 GN=LOC107406587 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.69e-22
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 1   GRR---GPGSSPPQCAAKCGTCTPCKLVLARVRVPPRAPMTADYYPQAWRCKCRNKLYIP 57
           GRR   GPGSSPP+C AKCG+CTPCK V   V VPP  P+TA+YYP+AWRCKC NKLY+P
Sbjct: 87  GRRYLSGPGSSPPRCTAKCGSCTPCKPV--HVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 144

[Close]

BLAST of MC03g0021 vs. ExPASy TrEMBL
Match: V4SWS4 (Epidermal patterning factor-like protein OS=Citrus clementina OX=85681 GN=CICLE_v10003052mg PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.11e-22
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 4  GPGSSPPQCAAKCGTCTPCKLVLARVRVPPRAPMTADYYPQAWRCKCRNKLYIP 57
          GPGSSPP+C +KCG CTPCK V   V VPP  P+TA+YYP+AWRCKC NKLY+P
Sbjct: 21 GPGSSPPRCTSKCGKCTPCKPV--HVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 72

[Close]

BLAST of MC03g0021 vs. TAIR 10
Match: AT2G30370.1 (allergen-related )

HSP 1 Score: 88.6 bits (218), Expect = 1.8e-18
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 3   RGPGSSPPQCAAKCGTCTPCKLVLARVRVPPRAPMTADYYPQAWRCKCRNKLYIP 58
           RG GSSPP+C++KCG CTPCK V   V VPP  P+TA+YYP+AWRCKC NKLY+P
Sbjct: 178 RGLGSSPPRCSSKCGRCTPCKPV--HVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 230

[Close]

BLAST of MC03g0021 vs. TAIR 10
Match: AT2G30370.2 (allergen-related )

HSP 1 Score: 88.6 bits (218), Expect = 1.8e-18
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 3   RGPGSSPPQCAAKCGTCTPCKLVLARVRVPPRAPMTADYYPQAWRCKCRNKLYIP 58
           RG GSSPP+C++KCG CTPCK V   V VPP  P+TA+YYP+AWRCKC NKLY+P
Sbjct: 104 RGLGSSPPRCSSKCGRCTPCKPV--HVPVPPGTPVTAEYYPEAWRCKCGNKLYMP 156

[Close]

BLAST of MC03g0021 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 75.5 bits (184), Expect = 1.6e-14
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 4   GPGSSPPQCAAKCGTCTPCKLVLARVRVPPRAPMTADYYPQAWRCKCRNKLYIP 58
           GPGSSPP C +KCG C PCK V   V + P   M  +YYP+AWRCKC NKL++P
Sbjct: 58  GPGSSPPTCRSKCGKCQPCKPV--HVPIQPGLSMPLEYYPEAWRCKCGNKLFMP 109

[Close]

BLAST of MC03g0021 vs. TAIR 10
Match: AT3G22820.1 (allergen-related )

HSP 1 Score: 72.8 bits (177), Expect = 1.0e-13
Identity = 31/54 (57.41%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 4   GPGSSPPQCAAKCGTCTPCKLVLARVRVPPRAPMTADYYPQAWRCKCRNKLYIP 58
           GPGS PP C  KCG C PCK V   V + P   M  +YYP+AWRCKC NKL++P
Sbjct: 56  GPGSVPPMCRLKCGKCEPCKAV--HVPIQPGLIMPLEYYPEAWRCKCGNKLFMP 107

[Close]

BLAST of MC03g0021 vs. TAIR 10
Match: AT1G80133.1 (unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 7.8e-06
Identity = 21/53 (39.62%), Postives = 28/53 (52.83%), Query Frame = 0


Query: 6  GSSPPQCAAKCGTCTPCKLVLARVR-VPPRAPMTADYYPQAWRCKCRNKLYIP 58
          GS PP CA KC  C PC   L  +R        +  YYP  W C+CR++++ P
Sbjct: 47 GSEPPVCATKCRNCKPCLPYLFDIRGAHDDDDDSEPYYPVKWICRCRDRVFEP 99

The following BLAST results are available for this feature:

BLAST of MC03g0021 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1PEY6	2.5e-17	69.09	EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q2V3I3	2.2e-13	59.26	EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q9LUH9	1.4e-12	57.41	EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q7M1E7	1.1e-07	52.94	Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1	[more]
Q9FY19	1.4e-07	52.94	Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1	[more]

BLAST of MC03g0021 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154900.1	1.07e-25	73.68	EPIDERMAL PATTERNING FACTOR-like protein 5 [Momordica charantia]	[more]
CAA2951276.1	3.72e-22	70.37	EPIDERMAL PATTERNING FACTOR 6 [Olea europaea subsp. europaea]	[more]
KAF3454817.1	3.95e-22	70.37	hypothetical protein FNV43_RR05265 [Rhamnella rubrinervis]	[more]
KAF5930719.1	4.73e-22	72.22	hypothetical protein HYC85_031592 [Camellia sinensis]	[more]
XP_016755813.1	5.28e-22	72.22	EPIDERMAL PATTERNING FACTOR-like protein 5 isoform X7 [Gossypium hirsutum]	[more]

BLAST of MC03g0021 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DKY2	5.19e-26	73.68	Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A7J7FR70	2.29e-22	72.22	Epidermal patterning factor-like protein OS=Camellia sinensis OX=4442 GN=HYC85_0...	[more]
A0A1U8PZM9	2.55e-22	72.22	Epidermal patterning factor-like protein OS=Gossypium hirsutum OX=3635 GN=LOC107...	[more]
A0A6P3Z507	2.69e-22	70.00	Epidermal patterning factor-like protein OS=Ziziphus jujuba OX=326968 GN=LOC1074...	[more]
V4SWS4	3.11e-22	70.37	Epidermal patterning factor-like protein OS=Citrus clementina OX=85681 GN=CICLE_...	[more]

BLAST of MC03g0021 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30370.1	1.8e-18	69.09	allergen-related	[more]
AT2G30370.2	1.8e-18	69.09	allergen-related	[more]
AT4G14723.1	1.6e-14	59.26	BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1);...	[more]
AT3G22820.1	1.0e-13	57.41	allergen-related	[more]
AT1G80133.1	7.8e-06	39.62	unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 prot...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 5..57 e-value: 6.8E-19 score: 67.6
None	No IPR available	PANTHER	PTHR33109:SF4	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 6	coord: 3..57
IPR039455	EPIDERMAL PATTERNING FACTOR-like protein	PANTHER	PTHR33109	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 3..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC03g0021.1	MC03g0021.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010052	guard cell differentiation
biological_process	GO:0010374	stomatal complex development
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane