Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTGCACCCTCTTGCCGTGCTGCCTACACCCATCTGCACGGTCCTACTGTGCAGCCTACGCACATGC GTGCGTCCCTGCCATGCTGCACACATCTCCATGCATGCTCGTGCAGCTACCTCGCCCCATGCAACCTACGCGCCTTACTCCCCTTACGCTGCCCGGTGTCACGGTCATACATTTTTCAACCGTGCGGCGCCATGACCTAAGCTCGACCATGGCCAGCCTTACGAGGAACTCTAGTCCCAATCCACCTTTTGCGCCCTTTTGTGGCTTTGTCGGACCTTAGGCGAGGTTCTTTCCTTCTCGACCGAGCTTCACTTGCAGCGGAATTCTAACTTGTCTAGGCAATGCCCATCACCCGTACGTGCATTTAAACTCTAACACAACTCTAGCCGGCTTGCCTCTACGCTAGGCCAAGCCCCACGGCTCTACCTTGCCTCTACTCTAGGCCAAGGTCTTCTAAACGCGACGTCGCAACTTGGTTTCAACCATCTTGGTTCTCGACCACTCGGCCGTCCTGCTCCTACGATGAGCCAGGACCTTATCG GTATGAGTTTCGACGCATAACGGGGCCAGAACGCGCTTAAAAAGCCAACTGGGTACAACCGGGAGATTCCTGCCGTTTAACTATTTCAAAACTAGCTTATCAGGCCCAACGGACACCTCTAAGACCATTCCTGTCGAGAAACTAGTCAATAACGGGCTAAACGGCCTTACCGGGTACTGCAAGGATGATTCCTGCCTACTTCCGGGCAAGGAATGA mRNA sequence
ATGCGTGCACCCTCTTGCCGTGCTGCCTACACCCATCTGCACGGTCCTACTGTGCAGCCTACGCACATGCGCCAAGCCCCACGGCTCTACCTTGCCTCTACTCTAGGCCAAGGTCTTCTAAACGCGACGTCGCAACTTGGTTTCAACCATCTTGGTTCTCGACCACTCGGCCGTCCTGCTCCTACGATGAGCCAGGACCTTATCGGCCCAACGGACACCTCTAAGACCATTCCTGTCGAGAAACTAGTCAATAACGGGCTAAACGGCCTTACCGGGTACTGCAAGGATGATTCCTGCCTACTTCCGGGCAAGGAATGA Coding sequence (CDS)
ATGCGTGCACCCTCTTGCCGTGCTGCCTACACCCATCTGCACGGTCCTACTGTGCAGCCTACGCACATGCGCCAAGCCCCACGGCTCTACCTTGCCTCTACTCTAGGCCAAGGTCTTCTAAACGCGACGTCGCAACTTGGTTTCAACCATCTTGGTTCTCGACCACTCGGCCGTCCTGCTCCTACGATGAGCCAGGACCTTATCGGCCCAACGGACACCTCTAAGACCATTCCTGTCGAGAAACTAGTCAATAACGGGCTAAACGGCCTTACCGGGTACTGCAAGGATGATTCCTGCCTACTTCCGGGCAAGGAATGA Protein sequence
MRAPSCRAAYTHLHGPTVQPTHMRQAPRLYLASTLGQGLLNATSQLGFNHLGSRPLGRPAPTMSQDLIGPTDTSKTIPVEKLVNNGLNGLTGYCKDDSCLLPGKE
Homology
BLAST of MC02g_new0332 vs. NCBI nr
Match:
XP_022136647.1 (uncharacterized protein LOC111008302 [Momordica charantia])
HSP 1 Score: 70.1 bits (170), Expect = 2.41e-11
Identity = 37/66 (56.06%), Postives = 42/66 (63.64%), Query Frame = 0
Query: 44 SQLGFNHLGSRPLGRPA----PTMSQDLIGPTDTSKTIPVEKLVNNGLNGLTGYCKDDSC 103 S+LG +HL S P A + L GPTD SKTIP+EKLVNNGLNGL GYC+DD Sbjct: 508 SKLGISHLSSSPAHPQANGQLSYVKTSLSGPTDASKTIPIEKLVNNGLNGLIGYCRDDFY 567 Query: 104 LLPGKE 105 P KE Sbjct: 568 RDPDKE 573
BLAST of MC02g_new0332 vs. ExPASy TrEMBL
Match:
A0A6J1C617 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1)
HSP 1 Score: 70.1 bits (170), Expect = 1.17e-11
Identity = 37/66 (56.06%), Postives = 42/66 (63.64%), Query Frame = 0
Query: 44 SQLGFNHLGSRPLGRPA----PTMSQDLIGPTDTSKTIPVEKLVNNGLNGLTGYCKDDSC 103 S+LG +HL S P A + L GPTD SKTIP+EKLVNNGLNGL GYC+DD Sbjct: 508 SKLGISHLSSSPAHPQANGQLSYVKTSLSGPTDASKTIPIEKLVNNGLNGLIGYCRDDFY 567 Query: 104 LLPGKE 105 P KE Sbjct: 568 RDPDKE 573
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
XP_022136647.1 2.41e-11 56.06 uncharacterized protein LOC111008302 [Momordica charantia] [more]
Match Name E-value Identity Description
A0A6J1C617 1.17e-11 56.06 Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1 [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
A T G C G T G C A C C C T C T T G C C G T G C T G C C T A C A C C C A T C T G C A C G G T C C T A C T G T G C A G C C T A C G C A C A T G C G C C A A G C C C C A C G G C T C T A C C T T G C C T C T A C T C T A G G C C A A G G T C T T C T A A A C G C G A C G T C G C A A C T T G G T T T C A A C C A T C T T G G T T C T C G A C C A C T C G G C C G T C C T G C T C C T A C G A T G A G C C A G G A C C T T A T C G G C C C A A C G G A C A C C T C T A A G A C C A T T C C T G T C G A G A A A C T A G T C A A T A A C G G G C T A A A C G G C C T T A C C G G G T A C T G C A A G G A T G A T T C C T G C C T A C T T C C G G G C A A G G A A T G A 50 100 150 200 250 300 Score = Sequence mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 51..73
Relationships
The following mRNA feature(s) are a part of this gene: