MC02g_new0298 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC02g_new0298
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC02: 12690250 .. 12691806 (-)
RNA-Seq Expression	MC02g_new0298
Synteny	MC02g_new0298

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGGTATCGAATTGCAAAGAGAGCATGGCCCTATGGACACTCTCAAACGGAATAAGAGATAGAAGGTTCATCTGTTCCCTAAGAGAGTTCCCAGCATAGACTGTGGCCGACCTCATGGTCAGGATTCAGCGGCACATAGCTGGAGAAGAGCTACTCGAAGCGCAATCCCTAAAGCAAGAAATGCCCATAGCCATCACGGAGGGACAAAGGCAAGTCGACCGACCGAGTCGCGCTTTTGTACAAGGAGTCAAGCTCATCTCGATCCGAGATCAAGGCAGACATACCGGCACAGTTAGAGAAATACACCCCAACGCGTATCCCAATGCACCAGATCATCGCATCGATCGATAGGACGCCAGTCGACAGCCTGCTCCAATGGCCTCAACGAATGAAGAGTGACTCAAGCAAAAAAGACTGAAGCAAATACTGTTTCACCACGACCACGGTCATGACACGACAAATTTTTGTAACCTTAAGGATCAGGTGGAATCACTGGTCCAGCGAGGATATCTGAAGGAGTTCGTAGGAGAAAGTCATGCACCCAATCGTAGGACAAAGAGGCATATCGGCCGCAGTAACCAAAACCTTCGTGGAGGGCCATCAAAAGGCTATTCTGGAAACAAGTGGAAGGTCTTGGCTAGACAAGCCTGAAACAGCTCGGCGGCACGAGAAGTCCTAGCAGCACGGACTACCGAGCTCGAGACCCCCATAACAGTCATGGATGAAGAAGCCACCACCCAACTCCAACCTTATAACGACGGGCTAGTGATAGTTGCAGACATTGACCATGTTCCCACACACCGAGTTTTGGTGGACGAGGGGAGCACAGGAAACGTTCTTACCCTAGGGTGTTGCAAACCCTCGGGTGGGACTCAACCAAGCTCGAGATGTCCCACCCCACTGGTCGGTTTCTCAGGCGAAAAAGTCTACCCCGAGGGTAGCATTTAGCTGTCTGTAACCTTGGGGGAAGGCAAGGGAGTCGTGACCAGAGTTGAGGAGTTCGTGGTAGTGGATAGTTCCTCGGTGTACAAGGCCATCCTGGGCCAGCCATTCACAACTTTCAGGTCGTCCCCTCCACCTATCATCAAGTGATGAAGTTCCTAATCCCTGATGGGATGGATCCGTTGTCGAACAACAGCGAGCCTCCCGAGAATGTTATGCAACCGCCATGAAGGAACCCAAGTTGGTGTGTACAGTTAGCGCCGACCCCAACGAGCCTCAATCAGTCGCTCTCAAAACCTTTGCAGAAGCTGGTAACACGAATTTGTCTGTCGACCCACCGACCAACCCCTGTGACGTGCTTGTGCTAGAGTTGGTCCCGACACCAAGCTCGGATCCCCAAGCGGTGGAAGTGGCGTCCAAGACAGTCGCTTGGGAGAGAGAGAAGAGCATCCTGTCGGCCAAAGAGCTCGAATCAGTCCCTGTCTTAGGGCCTAAGAAAACCATTAACGTGGGACCAAGCTGCCAAGTGACAAGAGGGAGCGTTTGGTTAGGTTCCTCCAAAATAACGCCGACGTCTTTGCTTGGTCCCACGACGACATGCCCATAATAGATCCC

mRNA sequence

ATGGATGAAGAAGCCACCACCCAACTCCAACCTTATAACGACGGGCTAGTGATAGTTGCAGACATTGACCATGTTCCCACACACCGAGTTTTGGTGGACGAGGGGAGCACAGGAAACGTTCTTACCCTAGGGTGTTGCAAACCCTCGGGTGGGACTCAACCAAGCTCGAGATGTCCCACCCCACTGGTCGGTTTCTCAGGCGAAAAAGTCTACCCCGAGGGTAGCATTTAG

Coding sequence (CDS)

ATGGATGAAGAAGCCACCACCCAACTCCAACCTTATAACGACGGGCTAGTGATAGTTGCAGACATTGACCATGTTCCCACACACCGAGTTTTGGTGGACGAGGGGAGCACAGGAAACGTTCTTACCCTAGGGTGTTGCAAACCCTCGGGTGGGACTCAACCAAGCTCGAGATGTCCCACCCCACTGGTCGGTTTCTCAGGCGAAAAAGTCTACCCCGAGGGTAGCATTTAG

Protein sequence

MDEEATTQLQPYNDGLVIVADIDHVPTHRVLVDEGSTGNVLTLGCCKPSGGTQPSSRCPTPLVGFSGEKVYPEGSI

Homology

[Close]

BLAST of MC02g_new0298 vs. NCBI nr
Match: XP_022158513.1 (uncharacterized protein LOC111024986 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 3.79e-13
Identity = 40/77 (51.95%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 1   MDEEATTQLQPYNDGLVIVADIDHVPTHRVLVDEGSTGNVLTLGC-CKPSGGTQPSSRCP 60
           ++EE  TQLQP+ND  V+VA IDH PT  +LVD GS  NVL L   C          RC 
Sbjct: 97  LNEEVNTQLQPHNDVFVVVARIDHEPTRWMLVDGGSLANVLPLTMLCTLGWDLTNLKRCA 156

Query: 61  TPLVGFSGEKVYPEGSI 76
             LVGFSGE+++ EGSI
Sbjct: 157 LLLVGFSGERLHLEGSI 173

[Close]

BLAST of MC02g_new0298 vs. NCBI nr
Match: XP_022158658.1 (uncharacterized protein LOC111025121 [Momordica charantia])

HSP 1 Score: 67.4 bits (163), Expect = 9.82e-12
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 11  PYNDGLVIVADIDHVPTHRVLVDEGSTGNVLTLGCCKPSGGTQPS-SRCPTPLVGFSGEK 70
           P+ND LVI   IDHV   RVLVD G++ N+L+L      G T+    + PTPLVGFSGE 
Sbjct: 100 PHNDALVIAPLIDHVLVRRVLVDGGASANILSLPTYLALGWTRSQLKKSPTPLVGFSGES 159

Query: 71  VYPEGSI 76
           V PEG I
Sbjct: 160 VSPEGCI 166

[Close]

BLAST of MC02g_new0298 vs. NCBI nr
Match: XP_022157676.1 (uncharacterized protein LOC111024332 [Momordica charantia])

HSP 1 Score: 69.3 bits (168), Expect = 1.40e-11
Identity = 37/67 (55.22%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 11  PYNDGLVIVADIDHVPTHRVLVDEGSTGNVLTLGCCKPSGGTQPS-SRCPTPLVGFSGEK 70
           P+ND LVI   IDHV   RVLVD G++ N+L+L      G T+    R PTPLVGFSGE 
Sbjct: 208 PHNDALVIAPLIDHVVVRRVLVDGGASANILSLPTYLALGWTRSQLKRSPTPLVGFSGES 267

Query: 71  VYPEGSI 76
           V PEG I
Sbjct: 268 VIPEGCI 274

[Close]

BLAST of MC02g_new0298 vs. NCBI nr
Match: XP_022154797.1 (uncharacterized protein LOC111021964 [Momordica charantia])

HSP 1 Score: 68.6 bits (166), Expect = 2.49e-11
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 11  PYNDGLVIVADIDHVPTHRVLVDEGSTGNVLTLGCCKPSGGTQPS-SRCPTPLVGFSGEK 70
           P+ND LVI   IDHV   RVLVD G++ N+L+L      G T+    + PTPLVGFSGE 
Sbjct: 255 PHNDALVIAPLIDHVVVRRVLVDGGASANILSLPTYHALGWTRSQLKKSPTPLVGFSGES 314

Query: 71  VYPEGSI 76
           V PEG I
Sbjct: 315 VIPEGCI 321

[Close]

BLAST of MC02g_new0298 vs. NCBI nr
Match: XP_022148126.1 (uncharacterized protein LOC111016881 [Momordica charantia])

HSP 1 Score: 67.0 bits (162), Expect = 3.47e-11
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 11  PYNDGLVIVADIDHVPTHRVLVDEGSTGNVLTLGCCKPSGGTQPSSR-CPTPLVGFSGEK 70
           P+ND LVI   IDHV   RVLVD G++ N+L+L      G T+   +  PTPLVGFSGE 
Sbjct: 159 PHNDALVIAPLIDHVVVRRVLVDGGASANILSLPTYLALGWTRSQLKESPTPLVGFSGES 218

Query: 71  VYPEGSI 76
           V PEG I
Sbjct: 219 VIPEGYI 225

[Close]

BLAST of MC02g_new0298 vs. ExPASy TrEMBL
Match: A0A6J1DWB0 (uncharacterized protein LOC111024986 OS=Momordica charantia OX=3673 GN=LOC111024986 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.83e-13
Identity = 40/77 (51.95%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 1   MDEEATTQLQPYNDGLVIVADIDHVPTHRVLVDEGSTGNVLTLGC-CKPSGGTQPSSRCP 60
           ++EE  TQLQP+ND  V+VA IDH PT  +LVD GS  NVL L   C          RC 
Sbjct: 97  LNEEVNTQLQPHNDVFVVVARIDHEPTRWMLVDGGSLANVLPLTMLCTLGWDLTNLKRCA 156

Query: 61  TPLVGFSGEKVYPEGSI 76
             LVGFSGE+++ EGSI
Sbjct: 157 LLLVGFSGERLHLEGSI 173

[Close]

BLAST of MC02g_new0298 vs. ExPASy TrEMBL
Match: A0A6J1DWR0 (uncharacterized protein LOC111025121 OS=Momordica charantia OX=3673 GN=LOC111025121 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.75e-12
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 11  PYNDGLVIVADIDHVPTHRVLVDEGSTGNVLTLGCCKPSGGTQPS-SRCPTPLVGFSGEK 70
           P+ND LVI   IDHV   RVLVD G++ N+L+L      G T+    + PTPLVGFSGE 
Sbjct: 100 PHNDALVIAPLIDHVLVRRVLVDGGASANILSLPTYLALGWTRSQLKKSPTPLVGFSGES 159

Query: 71  VYPEGSI 76
           V PEG I
Sbjct: 160 VSPEGCI 166

[Close]

BLAST of MC02g_new0298 vs. ExPASy TrEMBL
Match: A0A6J1DYW5 (uncharacterized protein LOC111024332 OS=Momordica charantia OX=3673 GN=LOC111024332 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.76e-12
Identity = 37/67 (55.22%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 11  PYNDGLVIVADIDHVPTHRVLVDEGSTGNVLTLGCCKPSGGTQPS-SRCPTPLVGFSGEK 70
           P+ND LVI   IDHV   RVLVD G++ N+L+L      G T+    R PTPLVGFSGE 
Sbjct: 208 PHNDALVIAPLIDHVVVRRVLVDGGASANILSLPTYLALGWTRSQLKRSPTPLVGFSGES 267

Query: 71  VYPEGSI 76
           V PEG I
Sbjct: 268 VIPEGCI 274

[Close]

BLAST of MC02g_new0298 vs. ExPASy TrEMBL
Match: A0A6J1DMN7 (uncharacterized protein LOC111021964 OS=Momordica charantia OX=3673 GN=LOC111021964 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.20e-11
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 11  PYNDGLVIVADIDHVPTHRVLVDEGSTGNVLTLGCCKPSGGTQPS-SRCPTPLVGFSGEK 70
           P+ND LVI   IDHV   RVLVD G++ N+L+L      G T+    + PTPLVGFSGE 
Sbjct: 255 PHNDALVIAPLIDHVVVRRVLVDGGASANILSLPTYHALGWTRSQLKKSPTPLVGFSGES 314

Query: 71  VYPEGSI 76
           V PEG I
Sbjct: 315 VIPEGCI 321

[Close]

BLAST of MC02g_new0298 vs. ExPASy TrEMBL
Match: A0A6J1D4F7 (uncharacterized protein LOC111016881 OS=Momordica charantia OX=3673 GN=LOC111016881 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.68e-11
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 11  PYNDGLVIVADIDHVPTHRVLVDEGSTGNVLTLGCCKPSGGTQPSSR-CPTPLVGFSGEK 70
           P+ND LVI   IDHV   RVLVD G++ N+L+L      G T+   +  PTPLVGFSGE 
Sbjct: 159 PHNDALVIAPLIDHVVVRRVLVDGGASANILSLPTYLALGWTRSQLKESPTPLVGFSGES 218

Query: 71  VYPEGSI 76
           V PEG I
Sbjct: 219 VIPEGYI 225

The following BLAST results are available for this feature:

BLAST of MC02g_new0298 vs.


Match Name	E-value	Identity	Description

BLAST of MC02g_new0298 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158513.1	3.79e-13	51.95	uncharacterized protein LOC111024986 [Momordica charantia]	[more]
XP_022158658.1	9.82e-12	53.73	uncharacterized protein LOC111025121 [Momordica charantia]	[more]
XP_022157676.1	1.40e-11	55.22	uncharacterized protein LOC111024332 [Momordica charantia]	[more]
XP_022154797.1	2.49e-11	53.73	uncharacterized protein LOC111021964 [Momordica charantia]	[more]
XP_022148126.1	3.47e-11	53.73	uncharacterized protein LOC111016881 [Momordica charantia]	[more]

BLAST of MC02g_new0298 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWB0	1.83e-13	51.95	uncharacterized protein LOC111024986 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DWR0	4.75e-12	53.73	uncharacterized protein LOC111025121 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DYW5	6.76e-12	55.22	uncharacterized protein LOC111024332 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DMN7	1.20e-11	53.73	uncharacterized protein LOC111021964 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1D4F7	1.68e-11	53.73	uncharacterized protein LOC111016881 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]

BLAST of MC02g_new0298 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC02g_new0298.1	MC02g_new0298.1	mRNA