MC02g_new0291 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC02g_new0291
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Cytochrome c oxidase subunit 2
Location	MC02: 12365140 .. 12365561 (-)
RNA-Seq Expression	MC02g_new0291
Synteny	MC02g_new0291

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTACGATCTCGCTGAAGAAGTTCAAGAATGGTCCCCCCTACGCAATAGAGGTCGAGGCACCGATCATTTCAAAGCCTCCTGCCGAGCGACCACTATGGGAGGTCAAACCAAGGACCTATGCAAGTCGGGGCTCATGCCCGGTCAATATTCGATCAAACAATAGGGGGCCGTATCACTGAGCTCTTTTTTATTGATTCAATACAATTAGGGGAAAAGGCTTTACGCGTGCGTTCGGAAACATAGGCTGATTGCTGAGCCCACTTTGGCTCAGCCGCACTACACTGGGTGCGAGCCACTTGAGAAGCAAGCTATTACAGCGAGCGGCTGGGGAAAGTCAATGATAAGCAAGAAAAGAAGAATAAGCAAGAAGAAAAGAGAAGTCCCGAGAAGTACTTCACTACGACCTCCTCTCAATTGA

mRNA sequence

ATGATTACGATCTCGCTGAAGAAGTTCAAGAATGGTCCCCCCTACGCAATAGAGGTCGAGGCACCGATCATTTCAAAGCCTCCTGCCGAGCGACCACTATGGGAGGGGAAAAGGCTTTACGCGTGCGTTCGGAAACATAGGCTGATTGCTGAGCCCACTTTGGCTCAGCCGCACTACACTGGGTGCGAGCCACTTGAGAAGCAAGCTATTACAGCGAGCGGCTGGGGAAAGTCAATGATAAGCAAGAAAAGAAGAATAAGCAAGAAGAAAAGAGAAGTCCCGAGAAGTACTTCACTACGACCTCCTCTCAATTGA

Coding sequence (CDS)

ATGATTACGATCTCGCTGAAGAAGTTCAAGAATGGTCCCCCCTACGCAATAGAGGTCGAGGCACCGATCATTTCAAAGCCTCCTGCCGAGCGACCACTATGGGAGGGGAAAAGGCTTTACGCGTGCGTTCGGAAACATAGGCTGATTGCTGAGCCCACTTTGGCTCAGCCGCACTACACTGGGTGCGAGCCACTTGAGAAGCAAGCTATTACAGCGAGCGGCTGGGGAAAGTCAATGATAAGCAAGAAAAGAAGAATAAGCAAGAAGAAAAGAGAAGTCCCGAGAAGTACTTCACTACGACCTCCTCTCAATTGA

Protein sequence

MITISLKKFKNGPPYAIEVEAPIISKPPAERPLWEGKRLYACVRKHRLIAEPTLAQPHYTGCEPLEKQAITASGWGKSMISKKRRISKKKREVPRSTSLRPPLN

Homology

[Close]

BLAST of MC02g_new0291 vs. NCBI nr
Match: KZM89906.1 (hypothetical protein DCAR_022731 [Daucus carota subsp. sativus])

HSP 1 Score: 67.0 bits (162), Expect = 1.84e-11
Identity = 31/47 (65.96%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 35 EGKRLYACVRKHRLIAEPTLAQPHYTGCEPLEKQAITASGWGKSMIS 81
          +G+ LYAC RK R  AEP LAQ H+ GCEP EKQAITASGW K   S
Sbjct: 40 KGRGLYACARKDRPTAEPILAQTHHPGCEPPEKQAITASGWSKGRPS 86

[Close]

BLAST of MC02g_new0291 vs. NCBI nr
Match: GEY07292.1 (cytochrome c oxidase subunit 2-1, mitochondrial [Tanacetum cinerariifolium])

HSP 1 Score: 60.8 bits (146), Expect = 7.82e-09
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 39  LYACVRKHRLIAEPTLAQPHYTGCEPLEKQAITASGW 75
           LYAC  K R  AEPTLAQPH+ GCEP +KQAIT SGW
Sbjct: 102 LYACAWKDRPTAEPTLAQPHHPGCEPPKKQAITMSGW 138

[Close]

BLAST of MC02g_new0291 vs. NCBI nr
Match: CAB4071510.1 (unnamed protein product [Lactuca saligna])

HSP 1 Score: 58.9 bits (141), Expect = 1.65e-07
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 42  CVR-KHRLIAEPTLAQPHYTGCEPLEKQAITASGWGKSMISKKRRISK 88
           CVR K R  AEPTLAQPH+ GCEP EKQAITASGW  SM  + + + K
Sbjct: 145 CVRRKDRPTAEPTLAQPHHPGCEPPEKQAITASGWS-SMEPRSKAVDK 191

[Close]

BLAST of MC02g_new0291 vs. NCBI nr
Match: GAV82963.1 (hypothetical protein CFOL_v3_26414, partial [Cephalotus follicularis])

HSP 1 Score: 55.1 bits (131), Expect = 1.91e-07
Identity = 24/33 (72.73%), Postives = 26/33 (78.79%), Query Frame = 0


Query: 43 VRKHRLIAEPTLAQPHYTGCEPLEKQAITASGW 75
          + KHR  AEP LAQPH+  CEP EKQAITASGW
Sbjct: 16 ISKHRPTAEPILAQPHHLWCEPPEKQAITASGW 48

[Close]

BLAST of MC02g_new0291 vs. NCBI nr
Match: GEU51884.1 (cytochrome c oxidase subunit 2, mitochondrial [Tanacetum cinerariifolium])

HSP 1 Score: 58.5 bits (140), Expect = 2.72e-07
Identity = 35/73 (47.95%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 34  WEGKRLYACVRKHRLIAEPTLAQPHYTGCEPLEKQAITASGWGKSMISKKRRISKKKREV 93
           W+   L     K R   +PTLAQPH+ GCEPLEKQAITA  W  SM+S+ + I K +  V
Sbjct: 698 WDVPSLGVKCDKDRPTVDPTLAQPHHPGCEPLEKQAITAYSWS-SMVSRSKAIDKIEEGV 757

Query: 94  PRST--SLRPPLN 104
             S   S+RP L+
Sbjct: 758 RLSIEQSIRPRLS 769

[Close]

BLAST of MC02g_new0291 vs. ExPASy TrEMBL
Match: A0A164V724 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022731 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 8.89e-12
Identity = 31/47 (65.96%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 35 EGKRLYACVRKHRLIAEPTLAQPHYTGCEPLEKQAITASGWGKSMIS 81
          +G+ LYAC RK R  AEP LAQ H+ GCEP EKQAITASGW K   S
Sbjct: 40 KGRGLYACARKDRPTAEPILAQTHHPGCEPPEKQAITASGWSKGRPS 86

[Close]

BLAST of MC02g_new0291 vs. ExPASy TrEMBL
Match: A0A6S7KLM7 (COX2_CUA domain-containing protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS485 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.00e-08
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 42  CVR-KHRLIAEPTLAQPHYTGCEPLEKQAITASGWGKSMISKKRRISK 88
           CVR K R  AEPTLAQPH+ GCEP EKQAITASGW  SM  + + + K
Sbjct: 145 CVRRKDRPTAEPTLAQPHHPGCEPPEKQAITASGWS-SMEPRSKAVDK 191

[Close]

BLAST of MC02g_new0291 vs. ExPASy TrEMBL
Match: A0A1Q3CSB8 (Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_26414 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.27e-08
Identity = 24/33 (72.73%), Postives = 26/33 (78.79%), Query Frame = 0


Query: 43 VRKHRLIAEPTLAQPHYTGCEPLEKQAITASGW 75
          + KHR  AEP LAQPH+  CEP EKQAITASGW
Sbjct: 16 ISKHRPTAEPILAQPHHLWCEPPEKQAITASGW 48

[Close]

BLAST of MC02g_new0291 vs. ExPASy TrEMBL
Match: A0A6L2KVG3 (Cytochrome c oxidase subunit 2, mitochondrial OS=Tanacetum cinerariifolium OX=118510 GN=Tci_023862 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.31e-07
Identity = 35/73 (47.95%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 34  WEGKRLYACVRKHRLIAEPTLAQPHYTGCEPLEKQAITASGWGKSMISKKRRISKKKREV 93
           W+   L     K R   +PTLAQPH+ GCEPLEKQAITA  W  SM+S+ + I K +  V
Sbjct: 698 WDVPSLGVKCDKDRPTVDPTLAQPHHPGCEPLEKQAITAYSWS-SMVSRSKAIDKIEEGV 757

Query: 94  PRST--SLRPPLN 104
             S   S+RP L+
Sbjct: 758 RLSIEQSIRPRLS 769

[Close]

BLAST of MC02g_new0291 vs. ExPASy TrEMBL
Match: A0A6S7LAF8 (Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS5028 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.01e-06
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 43  VRKHRLIAEPTLAQPHYTGCEPLEKQAITASGWGKSMISKKRRISK 88
           V   R  AEPTLAQPH+ GCEP EKQAITASGW  SM  + + + K
Sbjct: 71  VGNSRPTAEPTLAQPHHPGCEPPEKQAITASGWS-SMEPRSKAVDK 115

The following BLAST results are available for this feature:

BLAST of MC02g_new0291 vs.


Match Name	E-value	Identity	Description

BLAST of MC02g_new0291 vs. NCBI nr


Match Name	E-value	Identity	Description
KZM89906.1	1.84e-11	65.96	hypothetical protein DCAR_022731 [Daucus carota subsp. sativus]	[more]
GEY07292.1	7.82e-09	72.97	cytochrome c oxidase subunit 2-1, mitochondrial [Tanacetum cinerariifolium]	[more]
CAB4071510.1	1.65e-07	64.58	unnamed protein product [Lactuca saligna]	[more]
GAV82963.1	1.91e-07	72.73	hypothetical protein CFOL_v3_26414, partial [Cephalotus follicularis]	[more]
GEU51884.1	2.72e-07	47.95	cytochrome c oxidase subunit 2, mitochondrial [Tanacetum cinerariifolium]	[more]

BLAST of MC02g_new0291 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A164V724	8.89e-12	65.96	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022731 ...	[more]
A0A6S7KLM7	8.00e-08	64.58	COX2_CUA domain-containing protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS485 ...	[more]
A0A1Q3CSB8	9.27e-08	72.73	Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3...	[more]
A0A6L2KVG3	1.31e-07	47.95	Cytochrome c oxidase subunit 2, mitochondrial OS=Tanacetum cinerariifolium OX=11...	[more]
A0A6S7LAF8	1.01e-06	60.87	Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS5028 PE=4 SV=1	[more]

BLAST of MC02g_new0291 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC02g_new0291.1	MC02g_new0291.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042773	ATP synthesis coupled electron transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0004129	cytochrome-c oxidase activity