MC02g_new0260 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC02g_new0260
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC02: 11497372 .. 11498708 (-)
RNA-Seq Expression	MC02g_new0260
Synteny	MC02g_new0260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAAGGTTCCCAAACCTCAAGCAATCGAAAGCCTGCTGAGGGCTGGGGACGATCACCCGATCCGAAGGACCCAAAGGCACGACCTGGAGTGTACAAGCCACTAGTCGCTAGAAAGCCGAAGACTAGGGTGGACTCGCAGAGGTCAAGGTCTCAGATCCAAATAGAGGTGGCCATAGACCCCCAGGACGAGGTGGATACATGAGAGCTTAGGTGGCGGCCCTGACGGAAGCCTTGCAAGTGGTGGGAGTGCTGCTCCCCGAGCTACCAGTACTCGAGGTTCAACGTGATCCGAGGAGGGGTAAGGTAAAGGTCATCGACCTAGATCTAGAGAAGTCGGTAGGCCCGAACCCCTCGAAACTGATCTTGAGAGGAAACGATCGAGCTCGAGCCAATGACGACCTCCGTTCACACCTCTCCTCGCATAATAGTAGAGATCTCCGAAAAGTACTAAATTAGAAGTACTCCGTCAAGAAGGTTGAACGACCGACCAAATCGGAGTCGGTCAATAATTAGGAGTTGTAGCTGCAATTCGAGCAACTTAGGAAGGAGCTAAAAGAAGAGATCAAAAATGACCTAAAGAAGGCCCAGGGAAGGCCTCTGTTAGACGACGACGAGCCGGAAGAGCCGCCTTTAACCCAAGCCATCTTAACCACACTAATCTCTTCCAAAGGGAAGCTCCCTAGTTTTGACAAGTACAATGGGTCGGCCGACTCGATGGACCACGTCGAAACTTAAGAGTCTCTCATGGACTTTCATGCATATTCGGACGCGATGAAGTGTCGCACATTCTACATTACGCTGCAAGGCTCGGCTAGGAAGTGGTACTGGCAACTCATGCCCCACTCCATTTCTTCCTGGAAGTAGCTCTGTGAAACCTTTATCGCTCATTTTGCGGCACAATAGGAGACTTAACACTCCACCAGATATCTCCTCGCCTGTTCAGCCTTCGCTTTAGGGGTGAGACATGAATAGCTGATGGTCTTTGATAAAAAAGCCTCAGCAGACCATCAAGGCCACCATAGAGTGAGCGAGAAAGTTCATGTAGGCCAACAAACTCATCAAATCTCAAGAAGACCGACCAATCTGATCCAGCCCCTCGAGGGAAAGGAGGGGTCGAGACAACGCAAGGAGGACGTCGTTCCAGTACCAACAGGCGATCGCAATTCGCTCCAGAGGCAGGAAGCGAAATGCTTCCAACTAGAGCGGTTCGAGCGCTTCACGCCCTTAAATGTCTCCGTGGCAGAGATCCTCGCCAACATACAAAACTCGAAGCTTGACCTCCTCATGTGTCGAGATCTCGAGAAGCGCAATAGGTCGAAGTTTGTTTATTAA

mRNA sequence

ATGGCAGAAGGTTCCCAAACCTCAAGCAATCGAAAGCCTGCTGAGGGCTGGGGACGATCACCCGATCCGAAGGACCCAAAGGCACGACCTGGAGTGTACAAGCCACTAGTCGCTAGAAAGCCGAAGACTAGGGTGGACTCGCAGAGGTCAAGGTCTCAGATCCAAATAGAGGTGGCCATAGACCCCCAGGACGAGCCCCTCGAGGGAAAGGAGGGGTCGAGACAACGCAAGGAGGACGTCGTTCCAGTACCAACAGGCGATCGCAATTCGCTCCAGAGGCAGGAAGCGAAATGCTTCCAACTAGAGCGGTTCGAGCGCTTCACGCCCTTAAATGTCTCCGTGGCAGAGATCCTCGCCAACATACAAAACTCGAAGCTTGACCTCCTCATGTGTCGAGATCTCGAGAAGCGCAATAGGTCGAAGTTTGTTTATTAA

Coding sequence (CDS)

ATGGCAGAAGGTTCCCAAACCTCAAGCAATCGAAAGCCTGCTGAGGGCTGGGGACGATCACCCGATCCGAAGGACCCAAAGGCACGACCTGGAGTGTACAAGCCACTAGTCGCTAGAAAGCCGAAGACTAGGGTGGACTCGCAGAGGTCAAGGTCTCAGATCCAAATAGAGGTGGCCATAGACCCCCAGGACGAGCCCCTCGAGGGAAAGGAGGGGTCGAGACAACGCAAGGAGGACGTCGTTCCAGTACCAACAGGCGATCGCAATTCGCTCCAGAGGCAGGAAGCGAAATGCTTCCAACTAGAGCGGTTCGAGCGCTTCACGCCCTTAAATGTCTCCGTGGCAGAGATCCTCGCCAACATACAAAACTCGAAGCTTGACCTCCTCATGTGTCGAGATCTCGAGAAGCGCAATAGGTCGAAGTTTGTTTATTAA

Protein sequence

MAEGSQTSSNRKPAEGWGRSPDPKDPKARPGVYKPLVARKPKTRVDSQRSRSQIQIEVAIDPQDEPLEGKEGSRQRKEDVVPVPTGDRNSLQRQEAKCFQLERFERFTPLNVSVAEILANIQNSKLDLLMCRDLEKRNRSKFVY

Homology

[Close]

BLAST of MC02g_new0260 vs. NCBI nr
Match: XP_022158651.1 (uncharacterized protein LOC111025110 [Momordica charantia])

HSP 1 Score: 67.0 bits (162), Expect = 3.84e-10
Identity = 37/63 (58.73%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 87  DRNSLQRQEAKCFQLERFERFTPLNVSVAEILANIQNSKLDLL-----MCRDLEKRNRSK 144
           DRNS  +Q+ K  + ER++RFTPLNVSVA+I ANIQ+SKL+LL     M RD EK NR K
Sbjct: 141 DRNSRPKQKQKYGRPERYDRFTPLNVSVAKIFANIQDSKLNLLTEPNPMSRDPEKHNRLK 200

[Close]

BLAST of MC02g_new0260 vs. ExPASy TrEMBL
Match: A0A6J1E1K0 (uncharacterized protein LOC111025110 OS=Momordica charantia OX=3673 GN=LOC111025110 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.86e-10
Identity = 37/63 (58.73%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 87  DRNSLQRQEAKCFQLERFERFTPLNVSVAEILANIQNSKLDLL-----MCRDLEKRNRSK 144
           DRNS  +Q+ K  + ER++RFTPLNVSVA+I ANIQ+SKL+LL     M RD EK NR K
Sbjct: 141 DRNSRPKQKQKYGRPERYDRFTPLNVSVAKIFANIQDSKLNLLTEPNPMSRDPEKHNRLK 200

The following BLAST results are available for this feature:

BLAST of MC02g_new0260 vs.


Match Name	E-value	Identity	Description

BLAST of MC02g_new0260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158651.1	3.84e-10	58.73	uncharacterized protein LOC111025110 [Momordica charantia]	[more]

BLAST of MC02g_new0260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E1K0	1.86e-10	58.73	uncharacterized protein LOC111025110 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of MC02g_new0260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC02g_new0260.1	MC02g_new0260.1	mRNA