MC02g_new0242 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC02g_new0242
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	ATP synthase subunit alpha
Location	MC02: 10532374 .. 10532762 (+)
RNA-Seq Expression	MC02g_new0242
Synteny	MC02g_new0242

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGACATTTGTTGCCCTGGTTTATATCCCGGTAGTTCAAAACTAGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGGTCAGACCTTGATGCTGCCCAAGCGAAGATCGGCACTCGAAGGCTTGAGGAGCAACCTGCAAAAGGGAAAGCCCCCCGGCTGGGAGGAAGTGAGTTGTGGCTTATAAATAGGAAGATGAGGAGATAACGAGCGAAGGCTTTACCTGTCCCCGACGTGGACGCGGGCTTCTATAAGAGAATGAGAAGCTCTCAATACAAGAAAACGCGAACCGCGCGGAGCCTACCCGAGTTCGTGAAGTGGTTGGATTTTGCGAGCTATTCCAACCACGGTTGGATGTGATTCCAAGAGCCGAATGA

mRNA sequence

ATGCTTGACATTTGTTGCCCTGGTTTATATCCCGGTAGTTCAAAACTAGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGGTCAGACCTTGATGCTGCCCAAGCGAAGATCGGCACTCGAAGGCTTGAGGAGCAACCTGCAAAAGGGAAAGCCCCCCGGCTGGGAGGAAAGAATGAGAAGCTCTCAATACAAGAAAACGCGAACCGCGCGGAGCCTACCCGAGTTCGTGAAGTGGTTGGATTTTGCGAGCTATTCCAACCACGGTTGGATGTGATTCCAAGAGCCGAATGA

Coding sequence (CDS)

ATGCTTGACATTTGTTGCCCTGGTTTATATCCCGGTAGTTCAAAACTAGAATTGGCACAATATCGCGAAGTGGCCGCCTTTGCTCAATTTGGGTCAGACCTTGATGCTGCCCAAGCGAAGATCGGCACTCGAAGGCTTGAGGAGCAACCTGCAAAAGGGAAAGCCCCCCGGCTGGGAGGAAAGAATGAGAAGCTCTCAATACAAGAAAACGCGAACCGCGCGGAGCCTACCCGAGTTCGTGAAGTGGTTGGATTTTGCGAGCTATTCCAACCACGGTTGGATGTGATTCCAAGAGCCGAATGA

Protein sequence

MLDICCPGLYPGSSKLELAQYREVAAFAQFGSDLDAAQAKIGTRRLEEQPAKGKAPRLGGKNEKLSIQENANRAEPTRVREVVGFCELFQPRLDVIPRAE

Homology

[Close]

BLAST of MC02g_new0242 vs. ExPASy Swiss-Prot
Match: P12862 (ATP synthase subunit alpha, mitochondrial OS=Triticum aestivum OX=4565 GN=ATPA PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-07
Identity = 31/41 (75.61%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQP 51
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P
Sbjct: 391 GSSKLELAQYREVAAFAQFGSDLDAASQALLNRGARLTEVP 431

[Close]

BLAST of MC02g_new0242 vs. ExPASy Swiss-Prot
Match: P05494 (ATP synthase subunit alpha, mitochondrial OS=Zea mays OX=4577 GN=ATPA PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.2e-07
Identity = 31/41 (75.61%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQP 51
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P
Sbjct: 391 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVP 431

[Close]

BLAST of MC02g_new0242 vs. ExPASy Swiss-Prot
Match: P68542 (ATP synthase subunit alpha, mitochondrial OS=Brassica campestris OX=3711 GN=ATPA PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-06
Identity = 38/78 (48.72%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQPAKGKAPRLGGKNEKLSIQE 71
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P + +   L  + + L I  
Sbjct: 391 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKQILVIYA 450

Query: 72  NANRAEPTRVREVVGFCE 88
             N           GFC+
Sbjct: 451 AVN-----------GFCD 457

[Close]

BLAST of MC02g_new0242 vs. ExPASy Swiss-Prot
Match: P22201 (ATP synthase subunit alpha, mitochondrial OS=Brassica napus OX=3708 GN=ATPA PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-06
Identity = 38/78 (48.72%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQPAKGKAPRLGGKNEKLSIQE 71
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P + +   L  + + L I  
Sbjct: 391 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKQILVIYA 450

Query: 72  NANRAEPTRVREVVGFCE 88
             N           GFC+
Sbjct: 451 AVN-----------GFCD 457

[Close]

BLAST of MC02g_new0242 vs. ExPASy Swiss-Prot
Match: P68541 (ATP synthase subunit alpha, mitochondrial OS=Raphanus sativus OX=3726 GN=ATPA PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-06
Identity = 38/78 (48.72%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQPAKGKAPRLGGKNEKLSIQE 71
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P + +   L  + + L I  
Sbjct: 391 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKQILVIYA 450

Query: 72  NANRAEPTRVREVVGFCE 88
             N           GFC+
Sbjct: 451 AVN-----------GFCD 457

[Close]

BLAST of MC02g_new0242 vs. NCBI nr
Match: RCV43934.1 (hypothetical protein SETIT_9G334000v2 [Setaria italica])

HSP 1 Score: 58.9 bits (141), Expect = 1.66e-07
Identity = 37/62 (59.68%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQPAKGKAPRLGGKNEKLSIQE 71
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P + +   L  KN+ +S  E
Sbjct: 393 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYEPLPIKNKLISQYE 452

[Close]

BLAST of MC02g_new0242 vs. NCBI nr
Match: CAC13114.1 (F-1-ATP synthase, partial [Elymus sibiricus])

HSP 1 Score: 55.5 bits (132), Expect = 2.86e-07
Identity = 31/41 (75.61%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 12 GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQP 50
          GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P
Sbjct: 52 GSSKLELAQYREVAAFAQFGSDLDAASQALLNRGARLTEVP 92

[Close]

BLAST of MC02g_new0242 vs. NCBI nr
Match: QYK19258.1 (ATP synthase subunit 1 [Stelis grandiflora])

HSP 1 Score: 58.2 bits (139), Expect = 3.10e-07
Identity = 42/91 (46.15%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQPAKGKAPRLGGKNEKLSIQE 71
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P + +   L  + + + I  
Sbjct: 391 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYSPLPIEKQIVVIYA 450

Query: 72  NANRAEPTRVREVVGFCELFQPRLDVIPRAE 100
             N           GFC+  Q  LD+I + E
Sbjct: 451 AVN-----------GFCDRMQ--LDIISKYE 468

[Close]

BLAST of MC02g_new0242 vs. NCBI nr
Match: QYK19125.1 (ATP synthase subunit 1 [Myoxanthus exasperatus])

HSP 1 Score: 58.2 bits (139), Expect = 3.10e-07
Identity = 42/91 (46.15%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQPAKGKAPRLGGKNEKLSIQE 71
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P + +   L  + + + I  
Sbjct: 391 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYSPLPIEKQIVVIYA 450

Query: 72  NANRAEPTRVREVVGFCELFQPRLDVIPRAE 100
             N           GFC+  Q  LD+I + E
Sbjct: 451 AVN-----------GFCDRMQ--LDIISKYE 468

[Close]

BLAST of MC02g_new0242 vs. NCBI nr
Match: QYK19040.1 (ATP synthase subunit 1 [Stelis montserratii])

HSP 1 Score: 58.2 bits (139), Expect = 3.10e-07
Identity = 42/91 (46.15%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQPAKGKAPRLGGKNEKLSIQE 71
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P + +   L  + + + I  
Sbjct: 391 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYSPLPIEKQIVVIYA 450

Query: 72  NANRAEPTRVREVVGFCELFQPRLDVIPRAE 100
             N           GFC+  Q  LD+I + E
Sbjct: 451 AVN-----------GFCDRMQ--LDIISKYE 468

[Close]

BLAST of MC02g_new0242 vs. ExPASy TrEMBL
Match: A0A368SNK4 (ATP synthase subunit alpha OS=Setaria italica OX=4555 GN=SETIT_9G334000v2 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.03e-08
Identity = 37/62 (59.68%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQPAKGKAPRLGGKNEKLSIQE 71
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P + +   L  KN+ +S  E
Sbjct: 393 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYEPLPIKNKLISQYE 452

[Close]

BLAST of MC02g_new0242 vs. ExPASy TrEMBL
Match: Q9G724 (ATP synthase subunit alpha, mitochondrial (Fragment) OS=Elymus sibiricus OX=52830 GN=atpA PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.38e-07
Identity = 31/41 (75.61%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 12 GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQP 50
          GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P
Sbjct: 52 GSSKLELAQYREVAAFAQFGSDLDAASQALLNRGARLTEVP 92

[Close]

BLAST of MC02g_new0242 vs. ExPASy TrEMBL
Match: A0A270R625 (ATP-synt_ab_C domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_J01934 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.54e-07
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 12 GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQP 50
          GSSKL+LAQYREVAAFAQFGSDLDAA   +  R  RL E+P
Sbjct: 6  GSSKLQLAQYREVAAFAQFGSDLDAATQALLNRGARLTEEP 46

[Close]

BLAST of MC02g_new0242 vs. ExPASy TrEMBL
Match: A0A446Y9I7 (ATP-synt_ab_C domain-containing protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_7Bv1G050150 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.60e-07
Identity = 31/41 (75.61%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 12 GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQP 50
          GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P
Sbjct: 6  GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVP 46

[Close]

BLAST of MC02g_new0242 vs. ExPASy TrEMBL
Match: A0A2U1LQ91 (AtpA, mitochondrion OS=Artemisia annua OX=35608 GN=CTI12_AA465760 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.68e-07
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 12 GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQPAKGK-APRL 58
          GSSKLELAQYREVAA AQFGSDLDAA   +  R  RL E P + + APRL
Sbjct: 36 GSSKLELAQYREVAALAQFGSDLDAATQALLNRGARLTEVPKQPQYAPRL 85

[Close]

BLAST of MC02g_new0242 vs. TAIR 10
Match: AT2G07698.1 (ATPase, F1 complex, alpha subunit protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07
Identity = 38/78 (48.72%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQPAKGKAPRLGGKNEKLSIQE 71
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P + +   L  + + L I  
Sbjct: 661 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKQILVIYA 720

Query: 72  NANRAEPTRVREVVGFCE 88
             N           GFC+
Sbjct: 721 AVN-----------GFCD 727

[Close]

BLAST of MC02g_new0242 vs. TAIR 10
Match: ATMG01190.1 (ATP synthase subunit 1 )

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07
Identity = 38/78 (48.72%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 12  GSSKLELAQYREVAAFAQFGSDLDAAQAKIGTR--RLEEQPAKGKAPRLGGKNEKLSIQE 71
           GSSKLELAQYREVAAFAQFGSDLDAA   +  R  RL E P + +   L  + + L I  
Sbjct: 391 GSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKQILVIYA 450

Query: 72  NANRAEPTRVREVVGFCE 88
             N           GFC+
Sbjct: 451 AVN-----------GFCD 457

The following BLAST results are available for this feature:

BLAST of MC02g_new0242 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P12862	7.0e-07	75.61	ATP synthase subunit alpha, mitochondrial OS=Triticum aestivum OX=4565 GN=ATPA P...	[more]
P05494	9.2e-07	75.61	ATP synthase subunit alpha, mitochondrial OS=Zea mays OX=4577 GN=ATPA PE=3 SV=1	[more]
P68542	1.6e-06	48.72	ATP synthase subunit alpha, mitochondrial OS=Brassica campestris OX=3711 GN=ATPA...	[more]
P22201	1.6e-06	48.72	ATP synthase subunit alpha, mitochondrial OS=Brassica napus OX=3708 GN=ATPA PE=3...	[more]
P68541	1.6e-06	48.72	ATP synthase subunit alpha, mitochondrial OS=Raphanus sativus OX=3726 GN=ATPA PE...	[more]

BLAST of MC02g_new0242 vs. NCBI nr


Match Name	E-value	Identity	Description
RCV43934.1	1.66e-07	59.68	hypothetical protein SETIT_9G334000v2 [Setaria italica]	[more]
CAC13114.1	2.86e-07	75.61	F-1-ATP synthase, partial [Elymus sibiricus]	[more]
QYK19258.1	3.10e-07	46.15	ATP synthase subunit 1 [Stelis grandiflora]	[more]
QYK19125.1	3.10e-07	46.15	ATP synthase subunit 1 [Myoxanthus exasperatus]	[more]
QYK19040.1	3.10e-07	46.15	ATP synthase subunit 1 [Stelis montserratii]	[more]

BLAST of MC02g_new0242 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A368SNK4	8.03e-08	59.68	ATP synthase subunit alpha OS=Setaria italica OX=4555 GN=SETIT_9G334000v2 PE=3 S...	[more]
Q9G724	1.38e-07	75.61	ATP synthase subunit alpha, mitochondrial (Fragment) OS=Elymus sibiricus OX=5283...	[more]
A0A270R625	1.54e-07	73.17	ATP-synt_ab_C domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_J01...	[more]
A0A446Y9I7	1.60e-07	75.61	ATP-synt_ab_C domain-containing protein OS=Triticum turgidum subsp. durum OX=456...	[more]
A0A2U1LQ91	1.68e-07	68.00	AtpA, mitochondrion OS=Artemisia annua OX=35608 GN=CTI12_AA465760 PE=4 SV=1	[more]

BLAST of MC02g_new0242 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07698.1	1.1e-07	48.72	ATPase, F1 complex, alpha subunit protein	[more]
ATMG01190.1	1.1e-07	48.72	ATP synthase subunit 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038376	ATP synthase, alpha subunit, C-terminal domain superfamily	GENE3D	1.20.150.20		coord: 10..83 e-value: 1.3E-10 score: 43.4
IPR000793	ATP synthase, alpha subunit, C-terminal	PFAM	PF00306	ATP-synt_ab_C	coord: 12..39 e-value: 3.2E-9 score: 37.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..59
None	No IPR available	SUPERFAMILY	47917	C-terminal domain of alpha and beta subunits of F1 ATP synthase	coord: 12..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC02g_new0242.1	MC02g_new0242.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0016020	membrane
molecular_function	GO:0032559	adenyl ribonucleotide binding
molecular_function	GO:0043168	anion binding