MC02g_new0234 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC02g_new0234
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	protein SPIRRIG
Location	MC02: 10068977 .. 10072379 (+)
RNA-Seq Expression	MC02g_new0234
Synteny	MC02g_new0234

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCTCTACAGACCAGAGAGGCCCAAACCCAACGACAGATCGAGTGAGCCGGGGCTCGGTCCCGACCCCGGCTCGGCACATATCAGGGTCGAGCCCACTTTCTCTCCTCTCCCATTGGAAGAGGTGTCCCGATCCACGAATTCCTGTGATCCAGTGACGACGGATAGATGGACTCAACGAGAAGGTTCTAGAAGGCAAGACTCCTATAAATGGAACAACTGGATGAACCCAAGAGGTAAGCAAATAAACCCTAAGTACTTCACTTAGTAATTCTCTCATTGCTGACTTAAGCATCGGAGCCAGTGTGACTGAAGTCACACCGAGTTAAGGTTGTTCGGTTTTGCAGGCATCCAGTCCCATGATTATCGAGCTTGGTGCACATTTGGCGAGAACGGAGGAAGCCAAATTTCCAGCATCAACAATTGGCGCCGTCTGTGGGGACGATAAAAATCATACGACCAAGTAACATGAATCCGGAGGAAAGTTGTTGCGCCTCCGCTTATTAGCAAGAGGGACGAGTGCAAGTGCACACTGTCACAAGTAATAATCTGGAAATATTCCAAGTTCGTCTCCACAGGGGCTAGTTTTCTTTTAAAATTGATTTTGCAAATTGTTGGAATGAGCAATCGAGTCTGGGAATAAAAATAATTGATTGGTTGAAATGCACGTTTTATAATTTAATAAAATAGAATTTTGAAACCAACCCTCATACTACTGACTAGTTTGAAGAGAAATGAATTACACCTATCAGAATCTCACACTAAATTTACTCTCTAATTGCAAACTGGTTCAACTCCTATTCCATACCGCTTTTGGTTTGTTTAGAAGATTAGGCCAGTATTTAAAACATGTTTGTAAAATACTAGAAGAATCCTAAGTAATTAAAACTCCAACTTACGTTTAATGGGCAAGAGAGTCTATGTGTAGGATCTTGTTTAAGTTCTTATGTCTAAGTAACTCCCCATTTTATCTTGATGAACTCTGTTGACTCTAACATTTTCAGAATTAAACTCAACTGTTGTGATTTAAACAAGTGGCCAGCAAGTAAAATCAACTAGATTAATTAACTCAATCAAGATAAGCAATTTGAGCGTAACCGCCGTGCTATCTGATAGATGTAATTAAAATAATCGGAACTAAGTCATTCGTAAGAGGGTTGGAAAAGTAAATTAATTACTCATAAAAACATGAAAAATAGAAATAATAAGAAGTGGATTGAAATAAAATATCATATTAAGTTTAAGAAGTAATTACAATAGCTAAATTAAAACCGAGAACCAAAATCTAAAGAAAATGATAACAACAAAAAGGAATTGCAATAAAAATAATTCAAGGAATGTTGAGCAAAATTAAAGACAAAACAAATTCTANTTATCCGTGTCCGTTCCGCATGCGCTTCGCGCGCCATTGGCGCTTTGTTCTCCTCTTATTCTTCATTGGACGGTTCGGATGGACTTCGCCGTTCTTTCCCAACTCAAATTGAAAAGGCTGTCTCACATCGAGATGTCGATTCGTTTTCCGTCCCCAATGAGATGGGGAATTAGTAACCCCCTATTTCGACTTTTTGGCCCTTCATCTTTCTGAATCGAGGCCCGGCTCGCGTCGTTCCAACAATCGGCGGGGAGCACCTCAGTATACGATCGCGCGCAGTAACTGGGAGTCCTATTACACCTAAGGCCAACTTCAATTCACCAAACCAAGGTTCATCTCGTGTAGTGATTGTGGACTCGTACAAGGATATTGAGTAGACGGTTGATGTATCAGACTCGACCCTATCTTTCAGAGCATGCATTCCCATCCGTGTCGCAACTGATTCGGTAAGCTACGTGTCCGGTGCACGAAGAACTGCCTTCGGTCTCCCAAACAGACTTACTCGTGGCAACCTTCCGGCCGCCCAACGACCTATAAGCTTGATGGAACTTGGTATTTATAAGCTAAACCTTGCAATTTGGTGGAGAAAATCTTGGGTATTTGAGTGGAGGAGCTACGATGGCTTAACAGCATTTGGTTGCACGGATCAAGGGATTGGTTGAGATTTCTTCCAACTGCCCAGTCAACAAAAGCCCTTATTTGTAGGTGGAGAATGTGTCAGGCGCATTGCTGAAGTTTCTGGAGTGTTGGCGATGCGCCAGACGCATCGCTGCTAGCTTTAAGATAGCCTCTGTGTCATATGGGGCACGTGCATTGCTCCTTTTTCCTTCCTTTTTCCCCTATAAAACATATATATTTTTCATAATTCCATCTATTTATCCAAAACCAAGTGTACAAGTCTTTCCTAAGAAATAGTCCCATTTATACCGGATTCAATGCATGAAACACACGTATTTAATTTCAGAAGACACTAAACATGCACAATTTGTAAACATTTTTTCCTAAAATTCAAGACTTATCAAAAGTCCACGATGCTCTGATGAGAATTGCTCAGATCTGAGGAGATCTCAAGATAAAGCAAGTCAACAAGTTTTGTGGCGAAACCCAGAACAAATGAAGCAACAAATTCCAGGGCAGATCCTGAAGGAGATAAACCGACCAATCCGAAGAAAATGATGAACTGAGAACGGGTCTTACCCGAGGAAATTCCAAATGAGACGAAACCACAAGTCTCAGAGCAAAAAGAACAACACGGCCAAAGTTCTAATCAGATCATCCAAACGAGCGACAAGACATTGATGGTGAAGTGAGAAGTCACACCAATAGTCCGACATATCCAGTGGATGACCACACCGCCAAAGGGATGATAACGTCTCATACCATGAGATTAGATCATGAAACTAATGTTGTGCTCCCGGCAGATAACGACTCAATCAATAACGATGAAAAGACTGACCCGACCCCTTATGATCACATGGATCACCCGCCTCAGATAGAGGAAAGCCCGCTAAAGAATTAGAATCGATCCCTCTAACGTCTGAAGAGCAAGCAAATCGACAAGTTTCGAGGACAGATCCTAGATGAGGTAAATCGGCGGATTCCAAAATAGGTTCCGGGAAAAACGATTAATAAATCCCAGAATGGAGAAATCAACTTGATGAAGTTCTAAGTTCCAGAACGTATAGAGGAGCCGGTCGAGATCCATACAGTTGATGTTCCTGGACAGGTCGAGGGCAAGTTCGCAGCTCTGGAAGAGAAGGTTGAGGGAATGTATCAACGCATGTCCCGTCTACTCTAGCAATTGGGACAGCGAGAAGTGAATCCACCGCCCCTCGTCAGGGATCCTCGGAAGGGTAAAGCCCCGGAGTTGAGCGAGACAGAGGAATCGACTGCAAACGGCCAAAGCAAGTTGAAAATTGGAGGGAATGACAAACGACGTACCCGAATTTTTGATTCGTCAGGGCAACAGCAAGTCGTGAGGCAACTGAAGTCCCTGATACCCACGGGAGGCAATAAACGTCAAGAATGA

mRNA sequence

ATGGGCCTCTACAGACCAGAGAGGCCCAAACCCAACGACAGATCGAGTGAGCCGGGGCTCGGTCCCGACCCCGGCTCGGCACATATCAGGGTCGAGCCCACTTTCTCTCCTCTCCCATTGGAAGAGGTGTCCCGATCCACGAATTCCTGTGATCCAGTGACGACGGATAGATGGACTCAACGAGAAGGTTCTAGAAGGCAAGACTCCTATAAATGGAACAACTGGATGAACCCAAGAGAACGTATAGAGGAGCCGGTCGAGATCCATACAGTTGATGTTCCTGGACAGGTCGAGGGCAAGTTCGCAGCTCTGGAAGAGAAGCGAGAAGTGAATCCACCGCCCCTCGTCAGGGATCCTCGGAAGGGTAAAGCCCCGGAGTTGAGCGAGACAGAGGAATCGACTGCAAACGGCCAAAGCAAGTTGAAAATTGGAGGGAATGACAAACGACGTACCCGAATTTTTGATTCGTCAGGGCAACAGCAAGTCGTGAGGCAACTGAAGTCCCTGATACCCACGGGAGGCAATAAACGTCAAGAATGA

Coding sequence (CDS)

ATGGGCCTCTACAGACCAGAGAGGCCCAAACCCAACGACAGATCGAGTGAGCCGGGGCTCGGTCCCGACCCCGGCTCGGCACATATCAGGGTCGAGCCCACTTTCTCTCCTCTCCCATTGGAAGAGGTGTCCCGATCCACGAATTCCTGTGATCCAGTGACGACGGATAGATGGACTCAACGAGAAGGTTCTAGAAGGCAAGACTCCTATAAATGGAACAACTGGATGAACCCAAGAGAACGTATAGAGGAGCCGGTCGAGATCCATACAGTTGATGTTCCTGGACAGGTCGAGGGCAAGTTCGCAGCTCTGGAAGAGAAGCGAGAAGTGAATCCACCGCCCCTCGTCAGGGATCCTCGGAAGGGTAAAGCCCCGGAGTTGAGCGAGACAGAGGAATCGACTGCAAACGGCCAAAGCAAGTTGAAAATTGGAGGGAATGACAAACGACGTACCCGAATTTTTGATTCGTCAGGGCAACAGCAAGTCGTGAGGCAACTGAAGTCCCTGATACCCACGGGAGGCAATAAACGTCAAGAATGA

Protein sequence

MGLYRPERPKPNDRSSEPGLGPDPGSAHIRVEPTFSPLPLEEVSRSTNSCDPVTTDRWTQREGSRRQDSYKWNNWMNPRERIEEPVEIHTVDVPGQVEGKFAALEEKREVNPPPLVRDPRKGKAPELSETEESTANGQSKLKIGGNDKRRTRIFDSSGQQQVVRQLKSLIPTGGNKRQE

Homology

[Close]

BLAST of MC02g_new0234 vs. NCBI nr
Match: XP_022145129.1 (uncharacterized protein LOC111014646 [Momordica charantia])

HSP 1 Score: 77.0 bits (188), Expect = 1.42e-13
Identity = 50/112 (44.64%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 80  ERIEEPVEIHTVDVPGQVEGKFAALEEK-----------------REVNPPPLVRDPRKG 139
           ER E   E H +  P  ++ +FA LE+K                 +E +  PLVRDPRKG
Sbjct: 40  ERQEGLPEAHALTTPEPLQKQFAVLEDKVEGMLQRMTQVLRQYERQESDEVPLVRDPRKG 99

Query: 140 KAPELSETEESTANGQSKLKIGGNDKRRTRIFDSSGQQQVVRQLKSLIPTGG 174
           K P  SETEEST +  SKL+IGGN +RRT+IFDS   Q++ +Q K   P GG
Sbjct: 100 KGPAQSETEESTNSAGSKLRIGGNTRRRTQIFDS---QKMKKQHKYSAPNGG 148

[Close]

BLAST of MC02g_new0234 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 73.6 bits (179), Expect = 1.60e-11
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 79  RERIEEPVEIHTVDVPGQVEGKFAALEEKREVNPPPLVRDPRKGKAPELSETEESTANGQ 138
           +ER E   E   +  P   + +FA LE+K E +  PLVRDP+KGK P  S+TEEST +  
Sbjct: 39  QERQEGLXEXXALTTPEPFQKQFAVLEDK-ESDEVPLVRDPKKGKGPTESDTEESTNSVG 98

Query: 139 SKLKIGGNDKRRTRIFDSSGQQQVVRQLKSLIPTGG 174
           SKL+IGGN ++RTRIFD    ++  +Q KS  P GG
Sbjct: 99  SKLRIGGNTRQRTRIFDP---RKTKKQHKSPAPNGG 130

[Close]

BLAST of MC02g_new0234 vs. NCBI nr
Match: XP_022155816.1 (protein SPIRRIG [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 3.35e-07
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 114 PLVRDPRKGKAPELSETEESTANGQSKLKIGGNDKRRTRIFDSSGQQQVVRQLKSLIPTG 173
           PL R PRKGK P  SE+EEST +  S+L++  N KRRT+ FDS GQQ+  +Q KS +P G
Sbjct: 12  PLFRGPRKGKGPIESESEESTNSVGSRLRLEENIKRRTQNFDSRGQQKDKKQQKSPVPDG 71

[Close]

BLAST of MC02g_new0234 vs. ExPASy TrEMBL
Match: A0A6J1CUA7 (uncharacterized protein LOC111014646 OS=Momordica charantia OX=3673 GN=LOC111014646 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 6.88e-14
Identity = 50/112 (44.64%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 80  ERIEEPVEIHTVDVPGQVEGKFAALEEK-----------------REVNPPPLVRDPRKG 139
           ER E   E H +  P  ++ +FA LE+K                 +E +  PLVRDPRKG
Sbjct: 40  ERQEGLPEAHALTTPEPLQKQFAVLEDKVEGMLQRMTQVLRQYERQESDEVPLVRDPRKG 99

Query: 140 KAPELSETEESTANGQSKLKIGGNDKRRTRIFDSSGQQQVVRQLKSLIPTGG 174
           K P  SETEEST +  SKL+IGGN +RRT+IFDS   Q++ +Q K   P GG
Sbjct: 100 KGPAQSETEESTNSAGSKLRIGGNTRRRTQIFDS---QKMKKQHKYSAPNGG 148

[Close]

BLAST of MC02g_new0234 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 7.74e-12
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 79  RERIEEPVEIHTVDVPGQVEGKFAALEEKREVNPPPLVRDPRKGKAPELSETEESTANGQ 138
           +ER E   E   +  P   + +FA LE+K E +  PLVRDP+KGK P  S+TEEST +  
Sbjct: 39  QERQEGLXEXXALTTPEPFQKQFAVLEDK-ESDEVPLVRDPKKGKGPTESDTEESTNSVG 98

Query: 139 SKLKIGGNDKRRTRIFDSSGQQQVVRQLKSLIPTGG 174
           SKL+IGGN ++RTRIFD    ++  +Q KS  P GG
Sbjct: 99  SKLRIGGNTRQRTRIFDP---RKTKKQHKSPAPNGG 130

[Close]

BLAST of MC02g_new0234 vs. ExPASy TrEMBL
Match: A0A6J1DSV3 (protein SPIRRIG OS=Momordica charantia OX=3673 GN=LOC111022848 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.62e-07
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 114 PLVRDPRKGKAPELSETEESTANGQSKLKIGGNDKRRTRIFDSSGQQQVVRQLKSLIPTG 173
           PL R PRKGK P  SE+EEST +  S+L++  N KRRT+ FDS GQQ+  +Q KS +P G
Sbjct: 12  PLFRGPRKGKGPIESESEESTNSVGSRLRLEENIKRRTQNFDSRGQQKDKKQQKSPVPDG 71

The following BLAST results are available for this feature:

BLAST of MC02g_new0234 vs.


Match Name	E-value	Identity	Description

BLAST of MC02g_new0234 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145129.1	1.42e-13	44.64	uncharacterized protein LOC111014646 [Momordica charantia]	[more]
XP_022158830.1	1.60e-11	47.92	uncharacterized protein LOC111025293 [Momordica charantia]	[more]
XP_022155816.1	3.35e-07	55.74	protein SPIRRIG [Momordica charantia]	[more]

BLAST of MC02g_new0234 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CUA7	6.88e-14	44.64	uncharacterized protein LOC111014646 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1DWY0	7.74e-12	47.92	uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DSV3	1.62e-07	55.74	protein SPIRRIG OS=Momordica charantia OX=3673 GN=LOC111022848 PE=4 SV=1	[more]

BLAST of MC02g_new0234 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..179
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..179
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC02g_new0234.1	MC02g_new0234.1	mRNA