MC02g_new0222 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC02g_new0222
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionTranslation initiation factor IF-2
LocationMC02: 9357441 .. 9359697 (-)
RNA-Seq ExpressionMC02g_new0222
SyntenyMC02g_new0222
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CGACCGATGGCTCAAATATATGTATATATATTAAAACTTAAACTTTTTAACATGATCGAAATCTAAAATACACTTTAAACTTTTTTCTTATATATTTAACTATATTGAAAATCATCTACCATATTATTCCAATTCTAAACATACCACCCAAGTTTTTAAGTAAGTAAGAACAGATTTGCCAAACCGAGCATAACTCAAGTGGTTAAAGCACTTATCTTTGACCAAAAGATCATGAGTTCGAACTCGTCCCATAGTTGAAAAAAAAAGTAACAACAGAGTTGAATCAAATAGGATAAAAAATTAAATCCCCCAAGCAAAAAAAAAATAAAAAATAAAAATTACATTGCTTCGGTCTCTCTTCTACTGCCGCGCATTACCTTTTTAAGGACCTCAGCTCTTCAATCACCGACACGACATTCTTCTCGGACGAGCCCCCTTCACTTACGGCCCTTTTCGCCGCCGCTCCGAGCTCCTTAGCCCGCCTCCGTATCGCCGCCGCCTCCTCCGCCTCCCCCATCAAAAACCCCACCGCCGCCGCCACCTCCTCCCTCCCCACAATATCCTCTTCCTCCATCTCATCGCTCATATTCCACCACCGCCTCGCCCCCACCGGAACCCCCACCCTCAGCACCTCCGTCAACAGCTTCTCGTTATAAAACTGCTCTGAACTCACCGGCCACGTCACCATCGGCTGCCCGGTGCTGACCCCCTCGATCGACGAATTCCACCCACAGTGCGTCAGAAAACCCCCCGTCGACGGGTGCTCCAAAATCAAAAGCTGCGGCGCCCAAATCCGAACAATCAACCCCTTCTTCTTCTCTCTAACCACCCTCTCTTCAAACCCCTCCGGCAGCCCCTCCTCCGCCTCTCCCCCTTCGTTTTCGTTCTTCTTCCGAATCACCCATATGAAATTCCGGCCGGCGGACTCCAGCCCGTGGGCGATTTCCGCAATCTGCGCCGCCGGAAACCGCGTCATGCTCCCGAAACTCACATACAGAACCGAATTCGGCTCCTTCGAGTTCAACCAATCCAATAACTCCCCACTCTCCATCCCCGATTTGTTTCCCCTGTCGATTTTTCCGATCAAATCCTTATTCACGGCCAATGAAACCGGCCCTAATCCCCACGCCTTTATCCCAATTGTTCTCTTGTAATGCTCTAAATAAACCCCATCAAGTTCGTAGAATGTGTTCGTTACGATTCCGTAGCTCCTCCTCTCTGCTTCTTTGTATTTCTCTATCATCTCCGTGAATTGGCTTCGCTGGACTAGAAATTCCGGCTGCTGCGATTTTGTCATTTGGATCTTGTGGGGTAGCCCCGGGAGCTCAAATGTTTCAAAATCGGATGTTACTTTTTGGTGAGGGGCGTGCTGGAGAACAGAGTGCTCGGCAGAGTAGGCCATGAAATTGGAGACGAAGAACACCAACCGGGGAACGCCGAGCCGCGCCGCCGTGTCGGTGGTCCATCCGTAGGAGAGATCGCTCAAAATGCAATCCGGCCGTGTTTCTGGAATGATTACCTGTGACCCAAATGAGATTTAAACCGTAATTAAACAAATTCAGAGCGACCCATTAATTTAAAACAGTAGTTTAATTAATGAACCTGATCGATCTGTTTTTCGAGGATTAGAAAGGCTCGGTAGATTTTGCCTTGGAGGTCGCGCGAAACGACGTCGCTGAAGTTCTCGATGCCCGGAGGAAGGCCTACTTCGGCGGCGGGGAACGGGACGGTGCGGGTCTGGATTTTGTAGCCGGCGGCGAAGTCACGGGCGACGTCGTTTTGGAAGGAGCGGGCGTTGGATTCGGTGGTGATGATGGTGACGGCGGCACCGTGGCGGGCGAAGAGCCGCGCCATGTCCACGATCGGAATGATGTGGCCGGAGGCGAACAGAGGAAGAACAGTGATTCGGAGCTCTTCATTTTCCAGTACCATGATTTCTTACTTTCGAATCTCCGATGGTCGCCGGAGAAGATGGCCGGCGGTTTGAATCTGGATTCAGATTTTGGAGCTTGAACTAAAATAAGGACTTAAATTTACATTTTGTAAACTCAAAGTTCGATCACGATAATTATTTTTTTATTAATTTTTCTTTTTTGAGAAAAACGAAAATGATATTTAAACAAATAAAAAATATATATTTTTTTAAACATGATTACAATTTACAGACAACATATAATATAATAAGCATATGCTGCTGAAGTCAATTTTGGTCACATGAAAAACGTGACATGTTTCTAAACACGTGACTTATTTTCCT

mRNA sequence

ATGAAATTCCGGCCGGCGGACTCCAGCCCGTGGGCGATTTCCGCAATCTGCGCCGCCGGAAACCGCGTCATGCTCCCGAAACTCACATACAGAACCGAATTCGGCTCCTTCGAGTTCAACCAATCCAATAACTCCCCACTCTCCATCCCCGATTTGTTTCCCCTGTCGATTTTTCCGATCAAATCCTTATTCACGGCCAATGAAACCGGCCCTAATCCCCACGCCTTTATCCCAATTGTTCTCTTGTAA

Coding sequence (CDS)

ATGAAATTCCGGCCGGCGGACTCCAGCCCGTGGGCGATTTCCGCAATCTGCGCCGCCGGAAACCGCGTCATGCTCCCGAAACTCACATACAGAACCGAATTCGGCTCCTTCGAGTTCAACCAATCCAATAACTCCCCACTCTCCATCCCCGATTTGTTTCCCCTGTCGATTTTTCCGATCAAATCCTTATTCACGGCCAATGAAACCGGCCCTAATCCCCACGCCTTTATCCCAATTGTTCTCTTGTAA

Protein sequence

MKFRPADSSPWAISAICAAGNRVMLPKLTYRTEFGSFEFNQSNNSPLSIPDLFPLSIFPIKSLFTANETGPNPHAFIPIVLL
Homology
[Close]
BLAST of MC02g_new0222 vs. NCBI nr
Match: GER56607.1 (translation initiation factor IF-2 [Striga asiatica])

HSP 1 Score: 54.7 bits (130), Expect = 1.89e-06
Identity = 33/78 (42.31%), Postives = 39/78 (50.00%), Query Frame = 0 

Query: 5   PADSSPWAISAICAAGNRVMLPKLTYRTEFGSFEFNQSNNSPLSIPDLFPLSIFPIKSLF 64
           P DSSP AIS  C   N  MLPK  Y TEF  FE + +  S  S+ D FPL    +  L 
Sbjct: 171 PDDSSPAAISRSCPRANVTMLPKHRYTTEFDFFESSHARQSRSSMSDSFPLRDSSL--LL 230

Query: 65  TANETGPNPHAFIPIVLL 82
            +  +GP   AF P   L
Sbjct: 231 HSRRSGPTCQAFNPSTFL 246

[Close]
BLAST of MC02g_new0222 vs. ExPASy TrEMBL
Match: A0A5A7RHB5 (Translation initiation factor IF-2 OS=Striga asiatica OX=4170 GN=STAS_34348 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 9.16e-07
Identity = 33/78 (42.31%), Postives = 39/78 (50.00%), Query Frame = 0 

Query: 5   PADSSPWAISAICAAGNRVMLPKLTYRTEFGSFEFNQSNNSPLSIPDLFPLSIFPIKSLF 64
           P DSSP AIS  C   N  MLPK  Y TEF  FE + +  S  S+ D FPL    +  L 
Sbjct: 171 PDDSSPAAISRSCPRANVTMLPKHRYTTEFDFFESSHARQSRSSMSDSFPLRDSSL--LL 230

Query: 65  TANETGPNPHAFIPIVLL 82
            +  +GP   AF P   L
Sbjct: 231 HSRRSGPTCQAFNPSTFL 246

The following BLAST results are available for this feature:
BLAST of MC02g_new0222 vs.
Match NameE-valueIdentityDescription
BLAST of MC02g_new0222 vs. NCBI nr
Match NameE-valueIdentityDescription
GER56607.11.89e-0642.31translation initiation factor IF-2 [Striga asiatica][more]
BLAST of MC02g_new0222 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7RHB59.16e-0742.31Translation initiation factor IF-2 OS=Striga asiatica OX=4170 GN=STAS_34348 PE=4... [more]
BLAST of MC02g_new0222 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC02g_new0222.1MC02g_new0222.1mRNA