MC02g_new0083 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC02g_new0083
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionlate embryogenesis abundant protein M17-like
LocationMC02: 3577694 .. 3578840 (-)
RNA-Seq ExpressionMC02g_new0083
SyntenyMC02g_new0083
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTCCAAAACTATTTTATTTGCGTGTCTGTTGTTTGTCTCTGCTATTGTTATTGCGTCAGTGGTGGCCGAAGGAACTCAAGAGCAGCATGGGACAGTTGAAGGTATTGTATCATATCAGTATTCTTCACTTAGATAAATCATATTAATACTGAGATTCGAGCATAATTGACATATCTATAGTGTAATATATATAATATAATATATATGTACTAATTTTGACAAATCAATATCTAAATATTGATCCATAATAATTTTAAAATTATTTAACCCGATCCATATATATTGATGGTCTCTTCCATTTAATTTTTAGTTTATTTTTAGCTTGCATTTACGAGTTAGCCAATTTTAAATATACAAATGCATTATCCATATTGCAATCTCATTATATTGTATGTCTTTAATGTTAATTATTGGTTGATATATGGGTGAACGCAGTTGAGAATGGAAACTCAGTAGAAGAATCAAAGCAACGTTGTCGCTTCGGATGCTGCGGCTTTCATCCCATTAGTCGTCGTTGCATCAGCTGTTGTCCTCGTCGACCTGCAGAAGTGCAGGCCACCGAAAACCAAAATGGTGTCAACTCTCATAAATTTCTATTTGAATAATCTAACATTTAAAAATTTGTAGATAAAGATGCATTTTTCAAATTGTTTGACGTGTCTACAAATTAAAATTTTCCTATAAAAGTAATAATTATCTCATATTAAATAATATATATATATATATATATATAGATTAATGTTAATATTAATTATTGGTTGATATGGGTGAACACAGTTGAAAATGAAAATCCAGTAGAAGAATCAAAACAGCGTTGCCGTTACGGATGTTGTCGCTTTGATGGTCGTCGTTGCGTTAGATGCTGTCGTGGTCCTGCAGAAGTGGAGGCCACCCTCCAAAACCAAAATGGTTTCAACTCTCACCTTTTTCTTAGTCGGATCTATCAGAAGTAAAACAAACGTATAATATATATAAAAGATTGTAACATGAAATTTTGATATGATTGTACATATTCAGAGAACACAGTAGAAGAGAGTGAAGTGGAGACGAACGGATTGATAGGCGGCGGAAAGGGAGGAGGCAAAGGTGGCAAAGGAGGTTATAAAGGCGGGAAAGGAGGCAAAGGGAAAGGTGGGAAGTGA

mRNA sequence

ATGACGTCCAAAACTATTTTATTTGCGTGTCTGTTGTTTGTCTCTGCTATTGTTATTGCGTCAGTGGTGGCCGAAGGAACTCAAGAGCAGCATGGGACAGTTGAAGAGAACACAGTAGAAGAGAGTGAAGTGGAGACGAACGGATTGATAGGCGGCGGAAAGGGAGGAGGCAAAGGTGGCAAAGGAGGTTATAAAGGCGGGAAAGGAGGCAAAGGGAAAGGTGGGAAGTGA

Coding sequence (CDS)

ATGACGTCCAAAACTATTTTATTTGCGTGTCTGTTGTTTGTCTCTGCTATTGTTATTGCGTCAGTGGTGGCCGAAGGAACTCAAGAGCAGCATGGGACAGTTGAAGAGAACACAGTAGAAGAGAGTGAAGTGGAGACGAACGGATTGATAGGCGGCGGAAAGGGAGGAGGCAAAGGTGGCAAAGGAGGTTATAAAGGCGGGAAAGGAGGCAAAGGGAAAGGTGGGAAGTGA

Protein sequence

MTSKTILFACLLFVSAIVIASVVAEGTQEQHGTVEENTVEESEVETNGLIGGGKGGGKGGKGGYKGGKGGKGKGGK
Homology
BLAST of MC02g_new0083 vs. NCBI nr
Match: XP_022140624.1 (late embryogenesis abundant protein M17-like [Momordica charantia])

HSP 1 Score: 87.8 bits (216), Expect = 9.72e-20
Identity = 76/166 (45.78%), Postives = 76/166 (45.78%), Query Frame = 0

Query: 1   MTSKTILFACLLFVSAIVIASVVAEGTQEQHGTVE------------------------- 60
           MTSKTILFACLLFVSAIVIASVVAEGTQEQHGTVE                         
Sbjct: 1   MTSKTILFACLLFVSAIVIASVVAEGTQEQHGTVEVENGNSVEESKQRCRFGCCGFHPIS 60

Query: 61  ------------------------------------------------------------ 76
                                                                       
Sbjct: 61  RRCISCCPRRPAEVQVTENQNVENENPVEESKQRCRYGCCRFDGRRCVRCCRGPAEVEAT 120

BLAST of MC02g_new0083 vs. NCBI nr
Match: XP_022140567.1 (late embryogenesis abundant protein M17-like isoform X1 [Momordica charantia])

HSP 1 Score: 56.6 bits (135), Expect = 4.77e-08
Identity = 54/116 (46.55%), Postives = 59/116 (50.86%), Query Frame = 0

Query: 1   MTSKTILFACLLFVSAIVIASVVAEGTQEQH----------------------------- 60
           M SK + F CLLF+S +VIAS V+EGTQEQ+                             
Sbjct: 1   MRSKAVAFVCLLFISTVVIASAVSEGTQEQNEVEVENENPVEESKQRCRYGCCRFDGRRC 60

Query: 61  -----GTVEE---------NTVEESEVETNGL-IGGGKGG-GKGGKGGYKGGKGGK 71
                G  EE         NTVEESEVETNG   GGGKGG G GGKGG KGGKGGK
Sbjct: 61  VRCCRGPAEEEATIQNQNENTVEESEVETNGFGKGGGKGGKGVGGKGGGKGGKGGK 116

BLAST of MC02g_new0083 vs. NCBI nr
Match: XP_022140309.1 (uncharacterized protein LOC111011011 [Momordica charantia])

HSP 1 Score: 51.6 bits (122), Expect = 1.29e-05
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 0

Query: 1  MTSKTILFACLLFVSAIVIASVVAEGTQEQHGTVEE---NTVEES 42
          MTSK+I+FACLLFVSAIV  SVVAE TQ+QH  VE    N VEES
Sbjct: 1  MTSKSIVFACLLFVSAIVTVSVVAEETQQQHEAVEVENGNPVEES 45

BLAST of MC02g_new0083 vs. ExPASy TrEMBL
Match: A0A6J1CG70 (late embryogenesis abundant protein M17-like OS=Momordica charantia OX=3673 GN=LOC111011234 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.71e-20
Identity = 76/166 (45.78%), Postives = 76/166 (45.78%), Query Frame = 0

Query: 1   MTSKTILFACLLFVSAIVIASVVAEGTQEQHGTVE------------------------- 60
           MTSKTILFACLLFVSAIVIASVVAEGTQEQHGTVE                         
Sbjct: 1   MTSKTILFACLLFVSAIVIASVVAEGTQEQHGTVEVENGNSVEESKQRCRFGCCGFHPIS 60

Query: 61  ------------------------------------------------------------ 76
                                                                       
Sbjct: 61  RRCISCCPRRPAEVQVTENQNVENENPVEESKQRCRYGCCRFDGRRCVRCCRGPAEVEAT 120

BLAST of MC02g_new0083 vs. ExPASy TrEMBL
Match: A0A6J1CHC2 (late embryogenesis abundant protein M17-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011193 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.31e-08
Identity = 54/116 (46.55%), Postives = 59/116 (50.86%), Query Frame = 0

Query: 1   MTSKTILFACLLFVSAIVIASVVAEGTQEQH----------------------------- 60
           M SK + F CLLF+S +VIAS V+EGTQEQ+                             
Sbjct: 1   MRSKAVAFVCLLFISTVVIASAVSEGTQEQNEVEVENENPVEESKQRCRYGCCRFDGRRC 60

Query: 61  -----GTVEE---------NTVEESEVETNGL-IGGGKGG-GKGGKGGYKGGKGGK 71
                G  EE         NTVEESEVETNG   GGGKGG G GGKGG KGGKGGK
Sbjct: 61  VRCCRGPAEEEATIQNQNENTVEESEVETNGFGKGGGKGGKGVGGKGGGKGGKGGK 116

BLAST of MC02g_new0083 vs. ExPASy TrEMBL
Match: A0A6J1CFC0 (uncharacterized protein LOC111011011 OS=Momordica charantia OX=3673 GN=LOC111011011 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.26e-06
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 0

Query: 1  MTSKTILFACLLFVSAIVIASVVAEGTQEQHGTVEE---NTVEES 42
          MTSK+I+FACLLFVSAIV  SVVAE TQ+QH  VE    N VEES
Sbjct: 1  MTSKSIVFACLLFVSAIVTVSVVAEETQQQHEAVEVENGNPVEES 45

BLAST of MC02g_new0083 vs. ExPASy TrEMBL
Match: A0A6J1CHQ6 (uncharacterized protein LOC111011010 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011010 PE=4 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 7.75e-04
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 0

Query: 1  MTSKTILFACLLFVSAIVIASVVAEGTQEQHGTVEEN--TVEES 42
          M S  ++F CLLF+S +VIAS V+EGTQEQH    EN  ++EES
Sbjct: 1  MRSNAVVFGCLLFISTVVIASAVSEGTQEQHEVEVENGNSIEES 44

BLAST of MC02g_new0083 vs. ExPASy TrEMBL
Match: A0A6J1CGG8 (uncharacterized protein LOC111011010 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011010 PE=4 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 9.11e-04
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 0

Query: 1  MTSKTILFACLLFVSAIVIASVVAEGTQEQHGTVEEN--TVEES 42
          M S  ++F CLLF+S +VIAS V+EGTQEQH    EN  ++EES
Sbjct: 1  MRSNAVVFGCLLFISTVVIASAVSEGTQEQHEVEVENGNSIEES 44

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022140624.19.72e-2045.78late embryogenesis abundant protein M17-like [Momordica charantia][more]
XP_022140567.14.77e-0846.55late embryogenesis abundant protein M17-like isoform X1 [Momordica charantia][more]
XP_022140309.11.29e-0571.11uncharacterized protein LOC111011011 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A6J1CG704.71e-2045.78late embryogenesis abundant protein M17-like OS=Momordica charantia OX=3673 GN=L... [more]
A0A6J1CHC22.31e-0846.55late embryogenesis abundant protein M17-like isoform X1 OS=Momordica charantia O... [more]
A0A6J1CFC06.26e-0671.11uncharacterized protein LOC111011011 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A6J1CHQ67.75e-0456.82uncharacterized protein LOC111011010 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1CGG89.11e-0456.82uncharacterized protein LOC111011010 isoform X1 OS=Momordica charantia OX=3673 G... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010800Glycine rich proteinPFAMPF07172GRPcoord: 1..75
e-value: 7.5E-8
score: 33.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC02g_new0083.1MC02g_new0083.1mRNA