MC02g_new0076 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC02g_new0076
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC02: 3495535 .. 3496752 (+)
RNA-Seq Expression	MC02g_new0076
Synteny	MC02g_new0076

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATTAGATAGCTTTTTCAATTCACTAATTAGAGTGTCTAAAAGAAATAATAAATGCTAAGAGAGAAATATATATATATATATATATATATATATTAGAGCGGTCAAATTTCTAATATCTGTCAAATAGTAGCTAAAACAGACTGAAGCAAAATTGAACTTATGCTCCGAGAGAAAAATAACCCAAGTGATTAACTTTTCCTCTAGAGTAGAACCAGAATTAAATATAAAGTTTGTTTTTTTGTTTTTTTTTTTAATTACATGAATATGGCGTAGCGCATCCCGTCGCTTACCATGAGTTGATTGGCGTCGGAAAAATGATCGGCGGAGACCCAGAAGGCGTCGGCGCCGTGAACGGGCGGCTGAGCGAAGCAAGACAGAATAGAGAAAGGGGCGCGAATGATGGTGAAGATAAGGGAGAAGGTCCGGTGAGTGGTAGTTCGGTGGCGGTCGGCGGCGGTGGCGTAGATGGGCAATTCAGGTGGTGGGAACATGCTCTCGTCGGCTACGCGGTGGCTGTTCCTCGAATTGTGGAAACTGGGGCGAATTGCTGCGATCATCAGCCGCCACATGATATTTGTCCTTGTTGGGGTATGGAGAAAGAAATTAATAATGGAGAATTAATTAATCTGCAATAATTTGAAGCAGCACAGAGAGACAGAGAAAAGAAAAGGAAAAAAAATGGTCTTTGTTGGAAATGGAAGAGGGAGGGTATTTTTGGGATGGGGATTCTGATTTGATAAATGGGAAAATAGGCAACTTGTGCAAGTATTTTGGTAGTGTTAGTAGTGCTACTGAGTAGCCTTCCGCCTTCCTTTTAAAGGCAATCATCCACAATGGAAAAAGGAAAAAAAAAAAAAAAAAAAGCACCACTATTTTTTTTTCCCTTTTCTTTTGCTGAATTATTTCTGGCGCTCGCTCTAATTTTCTTTTTCAAATTTGTCTTTTCTAATAATAGAGTTGTGATCAAACTAATATGTGCGTGGAAGATAATGTGATAGATATATTGTGTCTCGTTTTTTGATAACATTTTTGTAAGTTTTTTCACTAATAATTGGGCTGAAAGATTGATTAGAACTATTACAATATCACTACCTAATAAACGCTTTATTTTTCTCCACTTTTACAACAAATATCTTATTATACTATATTTACATCATCGACTCTAAAAACTTTGAATTTTATAACTAAACAAATATAGATTGGTTTGATCTATTCG

mRNA sequence

ATGATCGGCGGAGACCCAGAAGGCGTCGGCGCCGTGAACGGGCGGCTGAGCGAAGCAAGACAGAATAGAGAAAGGGGCGCGAATGATGGTGAAGATAAGGGAGAAGGTCCGGTGAGTGGTAGTTCGGTGGCGGTCGGCGGCGGTGGCGTAGATGGGCAATTCAGGTGGTGGGAACATGCTCTCGTCGGCTACGCGGTGGCTGTTCCTCGAATTGTGGAAACTGGGGCGAATTGCTGCGATCATCAGCCGCCACATGATATTTGTCCTTGTTGGGGTATGGAGAAAGAAATTAATAATGGAGAATTAATTAATCTGCAATAA

Coding sequence (CDS)

ATGATCGGCGGAGACCCAGAAGGCGTCGGCGCCGTGAACGGGCGGCTGAGCGAAGCAAGACAGAATAGAGAAAGGGGCGCGAATGATGGTGAAGATAAGGGAGAAGGTCCGGTGAGTGGTAGTTCGGTGGCGGTCGGCGGCGGTGGCGTAGATGGGCAATTCAGGTGGTGGGAACATGCTCTCGTCGGCTACGCGGTGGCTGTTCCTCGAATTGTGGAAACTGGGGCGAATTGCTGCGATCATCAGCCGCCACATGATATTTGTCCTTGTTGGGGTATGGAGAAAGAAATTAATAATGGAGAATTAATTAATCTGCAATAA

Protein sequence

MIGGDPEGVGAVNGRLSEARQNRERGANDGEDKGEGPVSGSSVAVGGGGVDGQFRWWEHALVGYAVAVPRIVETGANCCDHQPPHDICPCWGMEKEINNGELINLQ

Homology

[Close]

BLAST of MC02g_new0076 vs. NCBI nr
Match: KAG6570928.1 (hypothetical protein SDJN03_29843, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.9 bits (224), Expect = 1.08e-20
Identity = 54/89 (60.67%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 1   MIGGDPEGVGA-VNGRLSEARQNRERGANDGEDKGEGPVSGSS--VAVGGGGVDGQFRWW 60
           +IGG+PEGVG  VNG  SEAR+NRERG ND ED G+G VS  +  V V G GVDG+F   
Sbjct: 30  VIGGEPEGVGGGVNGWWSEARENRERGTNDAEDGGDGAVSSRAAMVVVIGDGVDGEFSCS 89

Query: 61  EHALVGYAVAVPRIVETGANCCDHQPPHD 86
           EHALVG AVAV  +VE  A  CD + PHD
Sbjct: 90  EHALVGDAVAVSEVVEGRAKSCD-EAPHD 117

The following BLAST results are available for this feature:

BLAST of MC02g_new0076 vs.


Match Name	E-value	Identity	Description

BLAST of MC02g_new0076 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570928.1	1.08e-20	60.67	hypothetical protein SDJN03_29843, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MC02g_new0076 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MC02g_new0076 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC02g_new0076.1	MC02g_new0076.1	mRNA