MC02g_new0070 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC02g_new0070
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC02: 2896577 .. 2897775 (-)
RNA-Seq Expression	MC02g_new0070
Synteny	MC02g_new0070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CACATCACTATTATTTAAAAAAAATTCATTTTTTTAGCTGCATGGGTAGATTTTTTTTCTTTTTTTTTTTTGAGTTCACATTAGTAGATATTTAATGTATTAAACAATGGGGAAAACATGCCCCATAAAGTTTGATCCTACCTGACATTTTCTTTATTTATTTTTTAATTGTTTTATTTTTTGTCACGAAGTCTTGGTTGTACCATTCAAAAATATTGACGTGTCAGTATGCTAAAAAGAAAAACAAATATTTTACCAAACAAATAGGAATAGTTTTCAACCATTAATAGGCACCCACGAATCATCATATTATATTATGATATTATGAACAAATCTCAGTTTAAAATTTTAATTACACGTCACCCACCGAAAATAAAAGGCAAAATTACACAAATTCATTTTTTAAAGCTGAGAAAACAAAAACAAAAAAATAAAAATAAAAATGGTCAATTCCTATCCACCAGTCAACTGGAAGCTTCGTCCGCGGCCACTCCGATCAGTCCCACCTCCTCACTCCGCCGGGAATCTCTCCGATCACCGCCAGAACGACGGCGCCGAGCCACTCGATGCATCCGAATCCGTGCTTCTTCAGGCTCCGCATAAACCCGGCGTCTCCAGCGGCCGGCGGCGCGAGCATGGGCTGCAGGTAAGCCAAGGCGGCGTGCTTGACGAGTGGGTTCTTGATCGGAAGCTCGACGGAGCTGGAGAAGGGCGAGGCGGCAGAGGGCGGCGGCGGAGGTGTGTCCGGCAAGAGGTCCTTGAGGCTGGTGTAGGATTGGAGGGTGGTCATTTCGATGTGGTTGGAGAAATCCAGGTCCGGTGCGCTCCGGCCATTGGGGGAGAGGAAAGTGGGAGAGTGAGAGTGGGAATTAATGGGAGAAGATTCCATGGTTGAGTTGAGGAGAGAGAAATTGAAACGACTCGTGATTTATGGAATCTTGAAGATTTGGAGAGAGAGAGTTTATGGTTTTGCAGAGAATCGTGGAGAAGTTGTCTGTGAAGACGGAGGGAGAATTTGATGGAGTTTGGGAGCGTGAGGCACGTGCTTTCCACGAGCGTGAATTTGATTTCAAAATTAAATGGATAAAATTTGATTCATGACCAGTAAAAGCGTTATTGCCGTCCTCATATATTTGATAACTATAAGAGAAATAAAAAATAAAAATTTAATTTAAAAAATAATGGATTATTAAATATTT

mRNA sequence

ATGGTCAATTCCTATCCACCAGTCAACTGGAAGCTTCGTCCGCGGCCACTCCGATCAGTCCCACCTCCTCACTCCGCCGGGAATCTCTCCGATCACCGCCAGAACGACGGCGCCGAGCCACTCGATGCATCCGAATCCGTGCTTCTTCAGGCTCCGCATAAACCCGGCGTCTCCAGCGGCCGGCGGCGCGAGCATGGGCTGCAGGTAAGCCAAGGCGGCGTGCTTGACGAGTGGGTTCTTGATCGGAAGCTCGACGGAGCTGGAGAAGGGCGAGGCGGCAGAGGGCGGCGGCGGAGGTGTGTCCGGCAAGAGGTCCTTGAGGCTGGTGTAGGATTGGAGGGTGGTCATTTCGATGTGGTTGGAGAAATCCAGGTCCGGTGCGCTCCGGCCATTGGGGGAGAGGAAAGTGGGAGAGTGAGAGTGGGAATTAATGGGAGAAGATTCCATGGTTGA

Coding sequence (CDS)

ATGGTCAATTCCTATCCACCAGTCAACTGGAAGCTTCGTCCGCGGCCACTCCGATCAGTCCCACCTCCTCACTCCGCCGGGAATCTCTCCGATCACCGCCAGAACGACGGCGCCGAGCCACTCGATGCATCCGAATCCGTGCTTCTTCAGGCTCCGCATAAACCCGGCGTCTCCAGCGGCCGGCGGCGCGAGCATGGGCTGCAGGTAAGCCAAGGCGGCGTGCTTGACGAGTGGGTTCTTGATCGGAAGCTCGACGGAGCTGGAGAAGGGCGAGGCGGCAGAGGGCGGCGGCGGAGGTGTGTCCGGCAAGAGGTCCTTGAGGCTGGTGTAGGATTGGAGGGTGGTCATTTCGATGTGGTTGGAGAAATCCAGGTCCGGTGCGCTCCGGCCATTGGGGGAGAGGAAAGTGGGAGAGTGAGAGTGGGAATTAATGGGAGAAGATTCCATGGTTGA

Protein sequence

MVNSYPPVNWKLRPRPLRSVPPPHSAGNLSDHRQNDGAEPLDASESVLLQAPHKPGVSSGRRREHGLQVSQGGVLDEWVLDRKLDGAGEGRGGRGRRRRCVRQEVLEAGVGLEGGHFDVVGEIQVRCAPAIGGEESGRVRVGINGRRFHG

Homology

[Close]

BLAST of MC02g_new0070 vs. NCBI nr
Match: KGN62004.2 (hypothetical protein Csa_005914 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 5.08e-19
Identity = 51/88 (57.95%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 35  NDGAEPLDASESVLLQAPHKPGVSSGRRREHGLQVSQGGVLDEWVLDRKLDGAGEGRGGR 94
           +DG EPLDA+++VLL+   K  V  G   EHGL+V +GGV D+ VLD +L   G G GG 
Sbjct: 2   DDGGEPLDATKTVLLEDTEKGRVGGGGWGEHGLKVGEGGVFDKRVLDGELV-EGWGGGGW 61

Query: 95  GRRRRCVRQEVLEAGVGLEGGHFDVVGE 122
           GR RR V +EV EAGVGL+ GHFDVVGE
Sbjct: 62  GR-RRGVGEEVFEAGVGLKRGHFDVVGE 87

The following BLAST results are available for this feature:

BLAST of MC02g_new0070 vs.


Match Name	E-value	Identity	Description

BLAST of MC02g_new0070 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62004.2	5.08e-19	57.95	hypothetical protein Csa_005914 [Cucumis sativus]	[more]

BLAST of MC02g_new0070 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MC02g_new0070 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC02g_new0070.1	MC02g_new0070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000045	autophagosome assembly
cellular_component	GO:0000421	autophagosome membrane