MC02g1379 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC02g1379
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Cell wall-associated hydrolase
Location	MC02: 16279651 .. 16279824 (-)
RNA-Seq Expression	MC02g1379
Synteny	MC02g1379

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCGAACTACCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCCCCAGGTGGCGAAGAGCGGACATCGAGGTGCCAAACCTTCCCATCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGAT

mRNA sequence

ATGGACCGAACTACCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCCCCAGGTGGCGAAGAGCGGACATCGAGGTGCCAAACCTTCCCATCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGAT

Coding sequence (CDS)

ATGGACCGAACTACCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCCCCAGGTGGCGAAGAGCGGACATCGAGGTGCCAAACCTTCCCATCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGAT

Protein sequence

MDRTTSRRSEPSSRTALMGEQPNPWNILQPQVAKSGHRGAKPSHRCELLGKISLLSLD

Homology

[Close]

BLAST of MC02g1379 vs. NCBI nr
Match: QHO21812.1 (Cell wall-associated hydrolase [Arachis hypogaea])

HSP 1 Score: 111 bits (278), Expect = 9.25e-31
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1  MDRTTSRRSEPSSRTALMGEQPNPWNILQPQVAKSGHRGAKPSHRCELLGKISLLSLD 58
          MDRT SRRSEPSSRTALMGEQPNPWNILQPQVAKS HRGAKPS RCELLGKISLLSL+
Sbjct: 1  MDRTVSRRSEPSSRTALMGEQPNPWNILQPQVAKSRHRGAKPSRRCELLGKISLLSLE 58

[Close]

BLAST of MC02g1379 vs. NCBI nr
Match: KAG4909452.1 (hypothetical protein JHK87_055568 [Glycine soja] >KAG4909464.1 hypothetical protein JHK87_055580 [Glycine soja] >KAG4914203.1 hypothetical protein JHK87_051760 [Glycine soja])

HSP 1 Score: 113 bits (282), Expect = 1.61e-30
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1  MDRTTSRRSEPSSRTALMGEQPNPWNILQPQVAKSGHRGAKPSHRCELLGKISLLSLD 58
          MDRT SRRSEPSSRTALMGEQPNPWNILQPQVAKS HRGAKPS RCELLGKISLLSLD
Sbjct: 1  MDRTVSRRSEPSSRTALMGEQPNPWNILQPQVAKSRHRGAKPSRRCELLGKISLLSLD 58

[Close]

BLAST of MC02g1379 vs. NCBI nr
Match: QHN92996.1 (uncharacterized protein DS421_17g588840 [Arachis hypogaea])

HSP 1 Score: 111 bits (278), Expect = 3.45e-30
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1   MDRTTSRRSEPSSRTALMGEQPNPWNILQPQVAKSGHRGAKPSHRCELLGKISLLSLD 58
           MDRT SRRSEPSSRTALMGEQPNPWNILQPQVAKS HRGAKPS RCELLGKISLLSL+
Sbjct: 48  MDRTVSRRSEPSSRTALMGEQPNPWNILQPQVAKSRHRGAKPSRRCELLGKISLLSLE 105

[Close]

BLAST of MC02g1379 vs. NCBI nr
Match: KAF3449752.1 (hypothetical protein FNV43_RR05830 [Rhamnella rubrinervis])

HSP 1 Score: 111 bits (278), Expect = 3.45e-30
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1   MDRTTSRRSEPSSRTALMGEQPNPWNILQPQVAKSGHRGAKPSHRCELLGKISLLSLD 58
           MDRT SRRSEPSSRTALMGEQPNPWNILQPQVAKS HRGAKPS RCELLGKISLLSL+
Sbjct: 48  MDRTVSRRSEPSSRTALMGEQPNPWNILQPQVAKSRHRGAKPSRRCELLGKISLLSLE 105

[Close]

BLAST of MC02g1379 vs. NCBI nr
Match: YP_001152219.1 (ORF58f [Pinus koraiensis] >ABP35460.1 ORF58f [Pinus koraiensis])

HSP 1 Score: 108 bits (271), Expect = 1.08e-29
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1  MDRTTSRRSEPSSRTALMGEQPNPWNILQPQVAKSGHRGAKPSHRCELLGKISLLSLD 58
          MDRT SRRSEPSSRTALMGEQPNPWN+L PQVAKS HRGAKPS RCELLGKISLLSL+
Sbjct: 1  MDRTVSRRSEPSSRTALMGEQPNPWNVLPPQVAKSRHRGAKPSRRCELLGKISLLSLE 58

[Close]

BLAST of MC02g1379 vs. ExPASy TrEMBL
Match: A0A2U1NFY8 (Cell wall-associated hydrolase OS=Artemisia annua OX=35608 GN=CTI12_AA270580 PE=4 SV=1)

HSP 1 Score: 108 bits (269), Expect = 5.88e-29
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1   MDRTTSRRSEPSSRTALMGEQPNPWNILQPQVAKSGHRGAKPSHRCELLGKISLLSLD 58
           MDRT SRRSE SSRTALMGEQPNPWNILQPQVAKS HRGAKPS RCELLGKISLLSL+
Sbjct: 62  MDRTVSRRSERSSRTALMGEQPNPWNILQPQVAKSRHRGAKPSRRCELLGKISLLSLE 119

[Close]

BLAST of MC02g1379 vs. ExPASy TrEMBL
Match: A0A4S4EDU9 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_017304 PE=4 SV=1)

HSP 1 Score: 111 bits (278), Expect = 1.86e-28
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1  MDRTTSRRSEPSSRTALMGEQPNPWNILQPQVAKSGHRGAKPSHRCELLGKISLLSLD 58
          MDRT SRRSEPSSRTALMGEQPNPWNILQPQVAKS HRGAKPS RCELLGKISLLSL+
Sbjct: 1  MDRTVSRRSEPSSRTALMGEQPNPWNILQPQVAKSRHRGAKPSRRCELLGKISLLSLE 58

[Close]

BLAST of MC02g1379 vs. ExPASy TrEMBL
Match: T2DPD7 (Cell wall-associated hydrolase OS=Phaseolus vulgaris OX=3885 PE=2 SV=1)

HSP 1 Score: 111 bits (278), Expect = 1.37e-27
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1   MDRTTSRRSEPSSRTALMGEQPNPWNILQPQVAKSGHRGAKPSHRCELLGKISLLSLD 58
           MDRT SRRSEPSSRTALMGEQPNPWNILQPQVAKS HRGAKPS RCELLGKISLLSL+
Sbjct: 72  MDRTVSRRSEPSSRTALMGEQPNPWNILQPQVAKSRHRGAKPSRRCELLGKISLLSLE 129

[Close]

BLAST of MC02g1379 vs. ExPASy TrEMBL
Match: A0A7T7BVV6 (Uncharacterized protein OS=Chimonobambusa sichuanensis OX=387602 GN=ycf15 PE=4 SV=1)

HSP 1 Score: 102 bits (254), Expect = 2.07e-27
Identity = 51/58 (87.93%), Postives = 52/58 (89.66%), Query Frame = 0


Query: 1  MDRTTSRRSEPSSRTALMGEQPNPWNILQPQVAKSGHRGAKPSHRCELLGKISLLSLD 58
          MDRT SRRSEPSSRTALMGEQPNPWN LQ QVAKS HRGAKPS RC LLGKISLLSL+
Sbjct: 1  MDRTVSRRSEPSSRTALMGEQPNPWNHLQLQVAKSRHRGAKPSRRCGLLGKISLLSLE 58

[Close]

BLAST of MC02g1379 vs. ExPASy TrEMBL
Match: A0A5N6N5S8 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_25331 PE=4 SV=1)

HSP 1 Score: 111 bits (278), Expect = 2.43e-27
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1   MDRTTSRRSEPSSRTALMGEQPNPWNILQPQVAKSGHRGAKPSHRCELLGKISLLSLD 58
           MDRT SRRSEPSSRTALMGEQPNPWNILQPQVAKS HRGAKPS RCELLGKISLLSL+
Sbjct: 210 MDRTVSRRSEPSSRTALMGEQPNPWNILQPQVAKSRHRGAKPSRRCELLGKISLLSLE 267

The following BLAST results are available for this feature:

BLAST of MC02g1379 vs.


Match Name	E-value	Identity	Description

BLAST of MC02g1379 vs. NCBI nr


Match Name	E-value	Identity	Description
QHO21812.1	9.25e-31	93.10	Cell wall-associated hydrolase [Arachis hypogaea]	[more]
KAG4909452.1	1.61e-30	94.83	hypothetical protein JHK87_055568 [Glycine soja] >KAG4909464.1 hypothetical prot...	[more]
QHN92996.1	3.45e-30	93.10	uncharacterized protein DS421_17g588840 [Arachis hypogaea]	[more]
KAF3449752.1	3.45e-30	93.10	hypothetical protein FNV43_RR05830 [Rhamnella rubrinervis]	[more]
YP_001152219.1	1.08e-29	89.66	ORF58f [Pinus koraiensis] >ABP35460.1 ORF58f [Pinus koraiensis]	[more]

BLAST of MC02g1379 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2U1NFY8	5.88e-29	91.38	Cell wall-associated hydrolase OS=Artemisia annua OX=35608 GN=CTI12_AA270580 PE=...	[more]
A0A4S4EDU9	1.86e-28	93.10	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0173...	[more]
T2DPD7	1.37e-27	93.10	Cell wall-associated hydrolase OS=Phaseolus vulgaris OX=3885 PE=2 SV=1	[more]
A0A7T7BVV6	2.07e-27	87.93	Uncharacterized protein OS=Chimonobambusa sichuanensis OX=387602 GN=ycf15 PE=4 S...	[more]
A0A5N6N5S8	2.43e-27	93.10	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_25331 PE=4 SV=1	[more]

BLAST of MC02g1379 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC02g1379.1	MC02g1379.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016787	hydrolase activity