MC02g1365 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC02g1365
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionORF40s
LocationMC02: 16268834 .. 16269089 (-)
RNA-Seq ExpressionMC02g1365
SyntenyMC02g1365
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCACCTACAGACACTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTACCATGGGTGCTGGCACGGAGTTAGCCGATGTTTATTCCCCAGATACCGTCATTGCTTTTTCACTGGGAAAAGAAGTTCACGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGACCATTGCAGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGAACCAATGTGGC

mRNA sequence

CCACCTACAGACACTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTACCATGGGTGCTGGCACGGAGTTAGCCGATGTTTATTCCCCACCGTCATTGCTTTTTCACTGGGAAAAGAAGTTCACGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGACCATTGCAGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGAACCAATGTGGC

Coding sequence (CDS)

CCACCTACAGACACTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTACCATGGGTGCTGGCACGGAGTTAGCCGATGTTTATTCCCCACCGTCATTGCTTTTTCACTGGGAAAAGAAGTTCACGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGACCATTGCAGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGAACCAATGTGGC

Protein sequence

PPTDTLRPIIPDNACILCITMGAGTELADVYSPPSLLFHWEKKFTTRRPSTSTRHCSVRLSTIAENSPLLPPVGVWAVSQNQCG
Homology
BLAST of MC02g1365 vs. NCBI nr
Match: KAG9438515.1 (hypothetical protein H6P81_021548 [Aristolochia fimbriata])

HSP 1 Score: 135 bits (340), Expect = 1.46e-38
Identity = 66/85 (77.65%), Postives = 71/85 (83.53%), Query Frame = 0

Query: 1   PPTDTLRPIIPDNACILCITMGAGTELADVYSPPSLLFHW-EKKFTTRRPSTSTRHCSVR 60
           PPTD LRPIIPDNACILC+T  AG ELAD YS  +++     KKFTTR PSTSTRHCSVR
Sbjct: 67  PPTDALRPIIPDNACILCLTAAAGWELADAYSSDTVIASSPRKKFTTRGPSTSTRHCSVR 126

Query: 61  LSTIAENSPLLPPVGVWAVSQNQCG 84
           LS IAENSPLLPPVGVWAVSQ+QCG
Sbjct: 127 LSPIAENSPLLPPVGVWAVSQSQCG 151

BLAST of MC02g1365 vs. NCBI nr
Match: VVW84868.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 115 bits (287), Expect = 1.54e-31
Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 0

Query: 6  LRPIIPDNACILCITMGAGTELADVYSPPSLLFH-WEKKFTTRRPSTSTRHCSVRLSTIA 65
          LRPIIPDNACILC+T  AGTELAD YS  +++   WEKKFTTRRPSTSTRHCSVRLS IA
Sbjct: 2  LRPIIPDNACILCLTAAAGTELADAYSSDTVIASSWEKKFTTRRPSTSTRHCSVRLSPIA 61

Query: 66 ENSPLLPP 72
          ENSPLLPP
Sbjct: 62 ENSPLLPP 69

BLAST of MC02g1365 vs. NCBI nr
Match: PHU00637.1 (Photosystem I chlorophyll a apoprotein A1 [Capsicum chinense])

HSP 1 Score: 101 bits (252), Expect = 6.09e-23
Identity = 53/79 (67.09%), Postives = 56/79 (70.89%), Query Frame = 0

Query: 1   PPTDTLRPIIPDNACILCITMGAGTELADVYSPPSLLFHWEKKFTTRRPSTSTRHCSVRL 60
           PPTD LRPII DNACILCIT   GTELAD YS       WEKKFTT  PSTS RHC VRL
Sbjct: 300 PPTDALRPIILDNACILCITTATGTELADAYSQD-----WEKKFTTYGPSTSMRHCFVRL 359

Query: 61  STIAENSPLLPPVGVWAVS 79
           S I +NSPLL  VG  A++
Sbjct: 360 SPITKNSPLLSLVGPRALT 373

BLAST of MC02g1365 vs. NCBI nr
Match: PUZ50743.1 (hypothetical protein GQ55_6G083100 [Panicum hallii var. hallii])

HSP 1 Score: 91.7 bits (226), Expect = 2.26e-22
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = 0

Query: 34 PSLLFHWEKKFTTRRPSTSTRHCSVRLSTIAENSPLLPPVGVWAVSQNQCG 84
          PSL    EKK TTRRPSTSTRHCSVRLS IAENSPLLPPVGVWAVSQ+QCG
Sbjct: 7  PSLFLLREKKLTTRRPSTSTRHCSVRLSPIAENSPLLPPVGVWAVSQSQCG 57

BLAST of MC02g1365 vs. NCBI nr
Match: KAG2597864.1 (hypothetical protein PVAP13_5KG305814 [Panicum virgatum])

HSP 1 Score: 89.4 bits (220), Expect = 1.86e-21
Identity = 43/51 (84.31%), Postives = 44/51 (86.27%), Query Frame = 0

Query: 34 PSLLFHWEKKFTTRRPSTSTRHCSVRLSTIAENSPLLPPVGVWAVSQNQCG 84
          PSL    EKK TTRRPSTSTRHCSVRLS IAENSPLLPPVGVWAVS +QCG
Sbjct: 7  PSLFLLREKKLTTRRPSTSTRHCSVRLSPIAENSPLLPPVGVWAVSPSQCG 57

BLAST of MC02g1365 vs. ExPASy TrEMBL
Match: A0A5K1HCS1 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS29081 PE=4 SV=1)

HSP 1 Score: 115 bits (287), Expect = 7.48e-32
Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 0

Query: 6  LRPIIPDNACILCITMGAGTELADVYSPPSLLFH-WEKKFTTRRPSTSTRHCSVRLSTIA 65
          LRPIIPDNACILC+T  AGTELAD YS  +++   WEKKFTTRRPSTSTRHCSVRLS IA
Sbjct: 2  LRPIIPDNACILCLTAAAGTELADAYSSDTVIASSWEKKFTTRRPSTSTRHCSVRLSPIA 61

Query: 66 ENSPLLPP 72
          ENSPLLPP
Sbjct: 62 ENSPLLPP 69

BLAST of MC02g1365 vs. ExPASy TrEMBL
Match: A0A2G3B2E4 (PEP OS=Capsicum chinense OX=80379 GN=BC332_30424 PE=3 SV=1)

HSP 1 Score: 101 bits (252), Expect = 2.95e-23
Identity = 53/79 (67.09%), Postives = 56/79 (70.89%), Query Frame = 0

Query: 1   PPTDTLRPIIPDNACILCITMGAGTELADVYSPPSLLFHWEKKFTTRRPSTSTRHCSVRL 60
           PPTD LRPII DNACILCIT   GTELAD YS       WEKKFTT  PSTS RHC VRL
Sbjct: 300 PPTDALRPIILDNACILCITTATGTELADAYSQD-----WEKKFTTYGPSTSMRHCFVRL 359

Query: 61  STIAENSPLLPPVGVWAVS 79
           S I +NSPLL  VG  A++
Sbjct: 360 SPITKNSPLLSLVGPRALT 373

BLAST of MC02g1365 vs. ExPASy TrEMBL
Match: A0A2T7D5C9 (Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_6G083100 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.10e-22
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = 0

Query: 34 PSLLFHWEKKFTTRRPSTSTRHCSVRLSTIAENSPLLPPVGVWAVSQNQCG 84
          PSL    EKK TTRRPSTSTRHCSVRLS IAENSPLLPPVGVWAVSQ+QCG
Sbjct: 7  PSLFLLREKKLTTRRPSTSTRHCSVRLSPIAENSPLLPPVGVWAVSQSQCG 57

BLAST of MC02g1365 vs. ExPASy TrEMBL
Match: A0A6N2NH77 (Ribosomal_S7 domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS516037 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.16e-21
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0

Query: 34 PSLLFHWEKKFTTRRPSTSTRHCSVRLSTIAENSPLLPPVGVWAVSQNQC 83
          PSLL  WEKKFTTRRPSTSTRHCSV+LS IAENSPLLPPVGVWAVSQ+QC
Sbjct: 7  PSLLLLWEKKFTTRRPSTSTRHCSVKLSPIAENSPLLPPVGVWAVSQSQC 56

BLAST of MC02g1365 vs. ExPASy TrEMBL
Match: A0A7J9IM80 (Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_019665 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.28e-21
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 0

Query: 34 PSLLFHWEKKFTTRRPSTSTRHCSVRLSTIAENSPLLPPVGVWAVSQNQCG 84
          PSLL   EKKFTTR PSTSTRHCSVRLS IAENS +LPPVGVWAVSQ+QCG
Sbjct: 7  PSLLLLQEKKFTTRGPSTSTRHCSVRLSPIAENSTVLPPVGVWAVSQSQCG 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG9438515.11.46e-3877.65hypothetical protein H6P81_021548 [Aristolochia fimbriata][more]
VVW84868.11.54e-3180.88unnamed protein product, partial [Nymphaea colorata][more]
PHU00637.16.09e-2367.09Photosystem I chlorophyll a apoprotein A1 [Capsicum chinense][more]
PUZ50743.12.26e-2286.27hypothetical protein GQ55_6G083100 [Panicum hallii var. hallii][more]
KAG2597864.11.86e-2184.31hypothetical protein PVAP13_5KG305814 [Panicum virgatum][more]
Match NameE-valueIdentityDescription
A0A5K1HCS17.48e-3280.88Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS29... [more]
A0A2G3B2E42.95e-2367.09PEP OS=Capsicum chinense OX=80379 GN=BC332_30424 PE=3 SV=1[more]
A0A2T7D5C91.10e-2286.27Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_6G08310... [more]
A0A6N2NH771.16e-2190.00Ribosomal_S7 domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS... [more]
A0A7J9IM801.28e-2184.31Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_019665 PE=4 S... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC02g1365.1MC02g1365.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005622 intracellular anatomical structure