MC02g1346 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC02g1346
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Photosystem II reaction center protein I
Location	MC02: 16054091 .. 16054228 (+)
RNA-Seq Expression	MC02g1346
Synteny	MC02g1346

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTTTTTAATGATCTTGGAGATTGTGTAATGCGTACTCTCAAACTATTTGTTTATACAGTAGTAATATTCTTTGTTTCTCTCTTCATTTTCGGATTCCAATCTAATGACCCGGGACGTAATCCGCGACGTGAAGAA

mRNA sequence

CTTTTTTTTAATGATCTTGGAGATTGTGTAATGCGTACTCTCAAACTATTTGTTTATACAGTAGTAATATTCTTTGTTTCTCTCTTCATTTTCGGATTCCAATCTAATGACCCGGGACGTAATCCGCGACGTGAAGAA

Coding sequence (CDS)

CTTTTTTTTAATGATCTTGGAGATTGTGTAATGCGTACTCTCAAACTATTTGTTTATACAGTAGTAATATTCTTTGTTTCTCTCTTCATTTTCGGATTCCAATCTAATGACCCGGGACGTAATCCGCGACGTGAAGAA

Protein sequence

LFFNDLGDCVMRTLKLFVYTVVIFFVSLFIFGFQSNDPGRNPRREE

Homology

[Close]

BLAST of MC02g1346 vs. ExPASy Swiss-Prot
Match: A9LYG9 (Photosystem II reaction center protein I OS=Acorus americanus OX=263995 GN=psbI PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.7e-11
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 11 MRTLKLFVYTVVIFFVSLFIFGFQSNDPGRNPRREE 47
          M TLKLFVYTVVIFFVSLFIFGF SNDPGRNP REE
Sbjct: 1  MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of MC02g1346 vs. ExPASy Swiss-Prot
Match: Q3V550 (Photosystem II reaction center protein I OS=Acorus calamus OX=4465 GN=psbI PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.7e-11
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 11 MRTLKLFVYTVVIFFVSLFIFGFQSNDPGRNPRREE 47
          M TLKLFVYTVVIFFVSLFIFGF SNDPGRNP REE
Sbjct: 1  MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of MC02g1346 vs. ExPASy Swiss-Prot
Match: A4QJ99 (Photosystem II reaction center protein I OS=Aethionema cordifolium OX=434059 GN=psbI PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.7e-11
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 11 MRTLKLFVYTVVIFFVSLFIFGFQSNDPGRNPRREE 47
          M TLKLFVYTVVIFFVSLFIFGF SNDPGRNP REE
Sbjct: 1  MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of MC02g1346 vs. ExPASy Swiss-Prot
Match: A4QJI3 (Photosystem II reaction center protein I OS=Aethionema grandiflorum OX=72657 GN=psbI PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.7e-11
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 11 MRTLKLFVYTVVIFFVSLFIFGFQSNDPGRNPRREE 47
          M TLKLFVYTVVIFFVSLFIFGF SNDPGRNP REE
Sbjct: 1  MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of MC02g1346 vs. ExPASy Swiss-Prot
Match: A1E9Z2 (Photosystem II reaction center protein I OS=Agrostis stolonifera OX=63632 GN=psbI PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.7e-11
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 11 MRTLKLFVYTVVIFFVSLFIFGFQSNDPGRNPRREE 47
          M TLKLFVYTVVIFFVSLFIFGF SNDPGRNP REE
Sbjct: 1  MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of MC02g1346 vs. NCBI nr
Match: QYF07762.1 (PsbI [Gleditsia fera])

HSP 1 Score: 89.0 bits (219), Expect = 5.35e-22
Identity = 43/46 (93.48%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1  LFFNDLGDCVMRTLKLFVYTVVIFFVSLFIFGFQSNDPGRNPRREE 46
          LFFNDLGDCVM TLKLFVYTVVIFFVSLFIFGF SNDPGRNP REE
Sbjct: 11 LFFNDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 56

[Close]

BLAST of MC02g1346 vs. NCBI nr
Match: QYF07673.1 (PsbI [Gleditsia japonica])

HSP 1 Score: 89.0 bits (219), Expect = 8.30e-22
Identity = 43/46 (93.48%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1  LFFNDLGDCVMRTLKLFVYTVVIFFVSLFIFGFQSNDPGRNPRREE 46
          LFFNDLGDCVM TLKLFVYTVVIFFVSLFIFGF SNDPGRNP REE
Sbjct: 28 LFFNDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 73

[Close]

BLAST of MC02g1346 vs. NCBI nr
Match: YP_009724403.1 (photosystem II protein I [Senegalia senegal] >QGT77040.1 photosystem II protein I [Senegalia senegal])

HSP 1 Score: 87.8 bits (216), Expect = 1.36e-21
Identity = 42/45 (93.33%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 2  FFNDLGDCVMRTLKLFVYTVVIFFVSLFIFGFQSNDPGRNPRREE 46
          FFNDLGDCVM TLKLFVYTVVIFFVSLFIFGF SNDPGRNP REE
Sbjct: 7  FFNDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 51

[Close]

BLAST of MC02g1346 vs. NCBI nr
Match: YP_009715098.1 (photosystem II protein I [Corylus jacquemontii] >QGK87654.1 photosystem II protein I [Corylus jacquemontii])

HSP 1 Score: 84.0 bits (206), Expect = 4.48e-20
Identity = 40/43 (93.02%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 4  NDLGDCVMRTLKLFVYTVVIFFVSLFIFGFQSNDPGRNPRREE 46
          NDLGDCVM TLKLFVYTVVIFFVSLFIFGF SNDPGRNP REE
Sbjct: 8  NDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 50

[Close]

BLAST of MC02g1346 vs. NCBI nr
Match: YP_004769698.1 (photosystem II protein I [Magnolia kwangsiensis] >YP_007474354.1 photosystem II protein I [Magnolia officinalis] >YP_007474436.1 photosystem II protein I [Magnolia officinalis subsp. biloba] >YP_007474520.1 photosystem II protein I [Magnolia grandiflora] >YP_008993160.1 photosystem II protein I [Magnolia cathcartii] >YP_008993332.1 photosystem II protein I [Magnolia pyramidata] >YP_008993418.1 photosystem II protein I [Magnolia kobus] >YP_008993504.1 photosystem II protein I [Magnolia liliiflora] >YP_008993590.1 photosystem II protein I [Magnolia odora] >YP_008993676.1 photosystem II protein I [Magnolia salicifolia] >YP_008993762.1 photosystem II protein I [Magnolia sinica] >YP_008993848.1 photosystem II protein I [Magnolia sprengeri] >YP_009026865.1 photosystem II protein I [Magnolia tripetala] >YP_009365560.1 PsbI [Magnolia biondii] >YP_009416720.1 photosystem II protein I [Magnolia insignis] >YP_009429785.1 photosystem II protein I [Magnolia laevifolia] >YP_009463076.1 photosystem II protein I [Magnolia aromatica] >YP_009463162.1 photosystem II protein I [Magnolia conifera] >YP_009463248.1 photosystem II protein I [Magnolia duclouxii] >YP_009463334.1 photosystem II protein I [Magnolia glaucifolia] >YP_009463420.1 photosystem II protein I [Magnolia megaphylla] >YP_009463506.1 photosystem II protein I [Magnolia alba] >YP_009539555.1 photosystem II protein I [Magnolia sinostellata] >YP_009557690.1 PsbI [Magnolia zenii] >YP_009573632.1 photosystem II protein I [Magnolia sieboldii] >YP_009648566.1 photosystem II protein I [Magnolia odoratissima] >YP_009732658.1 photosystem II protein I [Magnolia wilsonii] >YP_009772585.1 photosystem II protein I [Magnolia maudiae] >YP_009773092.1 photosystem II protein I [Magnolia shiluensis] >YP_009825331.1 photosystem II protein I [Magnolia baillonii] >YP_009860567.1 photosystem II protein I [Magnolia gilbertoi] >YP_009860653.1 photosystem II protein I [Magnolia amazonica] >YP_009860739.1 photosystem II protein I [Magnolia dixonii] >YP_009862179.1 photosystem II protein I [Magnolia dodecapetala] >YP_009862265.1 photosystem II protein I [Magnolia ovata] >YP_009942547.1 photosystem II protein I [Magnolia coco] >YP_009946370.1 photosystem II protein I [Magnolia ofeliae] >YP_010025942.1 photosystem II protein I [Magnolia chapensis] >YP_010031649.1 photosystem II protein I [Magnolia balansae] >YP_010031735.1 photosystem II protein I [Magnolia figo] >YP_010031821.1 photosystem II protein I [Magnolia hookeri] >YP_010031908.1 photosystem II protein I [Magnolia zhengyiana] >YP_010040714.1 photosystem II protein I [Magnolia martini] >YP_010133315.1 photosystem II protein I [Magnolia denudata] >YP_010160298.1 PsbI [Magnolia duperreana] >YP_010160383.1 PsbI [Magnolia hypolampra] >YP_010160468.1 PsbI [Magnolia tamaulipana] >AFP92293.1 photosystem II protein I [Magnolia acuminata var. acuminata] >AUW35480.1 photosystem II protein I [Magnolia fordiana var. calcarea] >QFE31836.1 photosystem II protein I [Magnolia decidua] >QFP98600.1 photosystem II protein I [Magnolia sieboldii subsp. sinensis] >QGX04566.1 photosystem II protein I [Magnolia mexicana] >QGX42596.1 photosystem II protein I [Magnolia delavayi] >QIU82618.1 photosystem II protein I [Magnolia omeiensis] >QJF47518.1 photosystem II protein I [Magnolia fordiana var. fordiana] >QJT98152.1 photosystem II protein I [Magnolia obovata] >QJT98410.1 photosystem II protein I [Magnolia championii] >QJT98496.1 photosystem II protein I [Magnolia shangsiensis] >QJT99356.1 photosystem II protein I [Magnolia lotungensis] >QJT99442.1 photosystem II protein I [Magnolia sp. Wen 14597] >QJT99528.1 photosystem II protein I [Magnolia hodgsonii] >QJT99786.1 photosystem II protein I [Magnolia viridula] >QJT99958.1 photosystem II protein I [Magnolia siamensis] >QJU00217.1 photosystem II protein I [Magnolia acuminata] >QJU00475.1 photosystem II protein I [Magnolia fraseri] >QJU00561.1 photosystem II protein I [Magnolia sp. Wen 12418] >QJU00733.1 photosystem II protein I [Magnolia ovalis] >QJU01077.1 photosystem II protein I [Magnolia tsiampacca] >QJU01163.1 photosystem II protein I [Magnolia virginiana] >QJU01335.1 photosystem II protein I [Magnolia liliifera] >QJU01421.1 photosystem II protein I [Magnolia globosa] >QJU01593.1 photosystem II protein I [Magnolia sumatrana var. glauca] >QJU01679.1 photosystem II protein I [Magnolia montana] >QJU01765.1 photosystem II protein I [Magnolia kwangtungensis] >QJU01851.1 photosystem II protein I [Magnolia chevalieri] >QJU01937.1 photosystem II protein I [Magnolia cylindrica] >QJU02109.1 photosystem II protein I [Magnolia foveolata] >QJU02195.1 photosystem II protein I [Magnolia albosericea] >QJU02367.1 photosystem II protein I [Magnolia dawsoniana] >QJU02453.1 photosystem II protein I [Magnolia amoena] >QJU02539.1 photosystem II protein I [Magnolia bidoupensis] >QJU02711.1 photosystem II protein I [Magnolia sp. Wen 10839] >QJU02797.1 photosystem II protein I [Magnolia guatemalensis] >QJU02883.1 photosystem II protein I [Magnolia lenticellata] >QJU02969.1 photosystem II protein I [Magnolia elegans] >QJU03055.1 photosystem II protein I [Magnolia chimantensis] >QJU03313.1 photosystem II protein I [Magnolia pacifica subsp. tarahumara] >QJU03399.1 photosystem II protein I [Magnolia stellata] >QJU03485.1 photosystem II protein I [Magnolia ernestii] >QJU03657.1 photosystem II protein I [Magnolia nitida] >QJU03743.1 photosystem II protein I [Magnolia kachirachirai] >QKZ93712.1 photosystem II protein I [Magnolia fordiana var. hainanensis] >QOW03714.1 photosystem II protein I [Lirianthe sp. TW-2020] >QOX09751.1 photosystem II protein I [Magnolia champaca var. champaca] >QOY24624.1 photosystem II protein I [Magnolia hookeri var. longirostrata] >QPP00045.1 photosystem II protein I [Magnolia liliifera var. obovata] >QRH17646.1 PsbI [Magnolia sp. 'talauma'] >QZK22420.1 photosystem II protein I [Magnolia fordiana] >QZK22506.1 photosystem II protein I [Magnolia figlarii] >QZK22592.1 photosystem II protein I [Magnolia obovalifolia] >QZK22678.1 photosystem II protein I [Magnolia grandis])

HSP 1 Score: 84.0 bits (206), Expect = 4.59e-20
Identity = 40/43 (93.02%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 4  NDLGDCVMRTLKLFVYTVVIFFVSLFIFGFQSNDPGRNPRREE 46
          NDLGDCVM TLKLFVYTVVIFFVSLFIFGF SNDPGRNP REE
Sbjct: 9  NDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 51

[Close]

BLAST of MC02g1346 vs. ExPASy TrEMBL
Match: A0A650F2Q0 (Photosystem II reaction center protein I OS=Senegalia senegal OX=138043 GN=psbI PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.60e-22
Identity = 42/45 (93.33%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 2  FFNDLGDCVMRTLKLFVYTVVIFFVSLFIFGFQSNDPGRNPRREE 46
          FFNDLGDCVM TLKLFVYTVVIFFVSLFIFGF SNDPGRNP REE
Sbjct: 7  FFNDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 51

[Close]

BLAST of MC02g1346 vs. ExPASy TrEMBL
Match: A0A649WGT6 (Photosystem II reaction center protein I OS=Corylus jacquemontii OX=126984 GN=psbI PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.17e-20
Identity = 40/43 (93.02%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 4  NDLGDCVMRTLKLFVYTVVIFFVSLFIFGFQSNDPGRNPRREE 46
          NDLGDCVM TLKLFVYTVVIFFVSLFIFGF SNDPGRNP REE
Sbjct: 8  NDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 50

[Close]

BLAST of MC02g1346 vs. ExPASy TrEMBL
Match: G0WVK6 (Photosystem II reaction center protein I OS=Magnolia kwangsiensis OX=86722 GN=psbI PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.22e-20
Identity = 40/43 (93.02%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 4  NDLGDCVMRTLKLFVYTVVIFFVSLFIFGFQSNDPGRNPRREE 46
          NDLGDCVM TLKLFVYTVVIFFVSLFIFGF SNDPGRNP REE
Sbjct: 9  NDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 51

[Close]

BLAST of MC02g1346 vs. ExPASy TrEMBL
Match: A0A6H0JPQ9 (Photosystem II reaction center protein I OS=Magnolia omeiensis OX=114511 GN=psbI PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.22e-20
Identity = 40/43 (93.02%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 4  NDLGDCVMRTLKLFVYTVVIFFVSLFIFGFQSNDPGRNPRREE 46
          NDLGDCVM TLKLFVYTVVIFFVSLFIFGF SNDPGRNP REE
Sbjct: 9  NDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 51

[Close]

BLAST of MC02g1346 vs. ExPASy TrEMBL
Match: X5D9N3 (Photosystem II reaction center protein I OS=Magnolia tripetala OX=44926 GN=psbI PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.22e-20
Identity = 40/43 (93.02%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 4  NDLGDCVMRTLKLFVYTVVIFFVSLFIFGFQSNDPGRNPRREE 46
          NDLGDCVM TLKLFVYTVVIFFVSLFIFGF SNDPGRNP REE
Sbjct: 9  NDLGDCVMLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 51

[Close]

BLAST of MC02g1346 vs. TAIR 10
Match: ATCG00080.1 (photosystem II reaction center protein I )

HSP 1 Score: 67.8 bits (164), Expect = 2.6e-12
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 11 MRTLKLFVYTVVIFFVSLFIFGFQSNDPGRNPRREE 47
          M TLKLFVYTVVIFFVSLFIFGF SNDPGRNP REE
Sbjct: 1  MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

The following BLAST results are available for this feature:

BLAST of MC02g1346 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9LYG9	3.7e-11	91.67	Photosystem II reaction center protein I OS=Acorus americanus OX=263995 GN=psbI ...	[more]
Q3V550	3.7e-11	91.67	Photosystem II reaction center protein I OS=Acorus calamus OX=4465 GN=psbI PE=3 ...	[more]
A4QJ99	3.7e-11	91.67	Photosystem II reaction center protein I OS=Aethionema cordifolium OX=434059 GN=...	[more]
A4QJI3	3.7e-11	91.67	Photosystem II reaction center protein I OS=Aethionema grandiflorum OX=72657 GN=...	[more]
A1E9Z2	3.7e-11	91.67	Photosystem II reaction center protein I OS=Agrostis stolonifera OX=63632 GN=psb...	[more]

BLAST of MC02g1346 vs. NCBI nr


Match Name	E-value	Identity	Description
QYF07762.1	5.35e-22	93.48	PsbI [Gleditsia fera]	[more]
QYF07673.1	8.30e-22	93.48	PsbI [Gleditsia japonica]	[more]
YP_009724403.1	1.36e-21	93.33	photosystem II protein I [Senegalia senegal] >QGT77040.1 photosystem II protein ...	[more]
YP_009715098.1	4.48e-20	93.02	photosystem II protein I [Corylus jacquemontii] >QGK87654.1 photosystem II prote...	[more]
YP_004769698.1	4.59e-20	93.02	photosystem II protein I [Magnolia kwangsiensis] >YP_007474354.1 photosystem II ...	[more]

BLAST of MC02g1346 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A650F2Q0	6.60e-22	93.33	Photosystem II reaction center protein I OS=Senegalia senegal OX=138043 GN=psbI ...	[more]
A0A649WGT6	2.17e-20	93.02	Photosystem II reaction center protein I OS=Corylus jacquemontii OX=126984 GN=ps...	[more]
G0WVK6	2.22e-20	93.02	Photosystem II reaction center protein I OS=Magnolia kwangsiensis OX=86722 GN=ps...	[more]
A0A6H0JPQ9	2.22e-20	93.02	Photosystem II reaction center protein I OS=Magnolia omeiensis OX=114511 GN=psbI...	[more]
X5D9N3	2.22e-20	93.02	Photosystem II reaction center protein I OS=Magnolia tripetala OX=44926 GN=psbI ...	[more]

BLAST of MC02g1346 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00080.1	2.6e-12	91.67	photosystem II reaction center protein I	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003686	Photosystem II PsbI	PFAM	PF02532	PsbI	coord: 11..45 e-value: 1.2E-21 score: 76.3
IPR003686	Photosystem II PsbI	PANTHER	PTHR35772	PHOTOSYSTEM II REACTION CENTER PROTEIN I	coord: 3..46
IPR003686	Photosystem II PsbI	HAMAP	MF_01316	PSII_PsbI	coord: 11..46 score: 16.127209
None	No IPR available	PANTHER	PTHR35772:SF1	PHOTOSYSTEM II REACTION CENTER PROTEIN I	coord: 3..46
IPR037271	Photosystem II PsbI superfamily	SUPERFAMILY	161041	Photosystem II reaction center protein I, PsbI	coord: 11..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC02g1346.1	MC02g1346.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009539	photosystem II reaction center
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II