MC02g1312 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC02g1312
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	protein PROTON GRADIENT REGULATION 5, chloroplastic-like
Location	MC02: 13904670 .. 13904829 (-)
RNA-Seq Expression	MC02g1312
Synteny	MC02g1312

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAATGGCAGTGACTGGATTGGCTTGTTCTTCTTCTTTCTTCGGAGGCTGGGGGTCTTCGGTGGCCGAAGAGGACTATGCGGCGCTGGCGGCGGCGAAGACGGCAGCTGTAAGTGAGAGTGGGGAAGCCGGTGAGATTCATGTCGATGATGAAGAACGTG

mRNA sequence

TCAATGGCAGTGACTGGATTGGCTTGTTCTTCTTCTTTCTTCGGAGGCTGGGGGTCTTCGGTGGCCGAAGAGGACTATGCGGCGCTGGCGGCGGCGAAGACGGCAGCTGTAGTGAGAGTGGGGAAGCCGGTGAGATTCATGTCGATGATGAAGAACGTG

Coding sequence (CDS)

TCAATGGCAGTGACTGGATTGGCTTGTTCTTCTTCTTTCTTCGGAGGCTGGGGGTCTTCGGTGGCCGAAGAGGACTATGCGGCGCTGGCGGCGGCGAAGACGGCAGCTGTAGTGAGAGTGGGGAAGCCGGTGAGATTCATGTCGATGATGAAGAACGTG

Protein sequence

SMAVTGLACSSSFFGGWGSSVAEEDYAALAAAKTAAVVRVGKPVRFMSMMKNV

Homology

[Close]

BLAST of MC02g1312 vs. NCBI nr
Match: XP_022138463.1 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Momordica charantia])

HSP 1 Score: 83.6 bits (205), Expect = 5.85e-19
Identity = 48/53 (90.57%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 2  MAVTGLACSSSFFGGWGSSVAEEDYAALAAAKTAAV-VRVGKPVRFMSMMKNV 53
          MA TGLACSSSFFGGWGSSVA EDYAALAAAKTAAV VRVGKPVRF  MMKNV
Sbjct: 1  MAATGLACSSSFFGGWGSSVAGEDYAALAAAKTAAVQVRVGKPVRFRPMMKNV 53

[Close]

BLAST of MC02g1312 vs. NCBI nr
Match: XP_038875853.1 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 66.6 bits (161), Expect = 2.95e-12
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 1  SMAVTGLACSSSFFGGWGSSVAEEDYAALAAAKTAAVVRVGKPVRFMSMMKNV 53
          S++ TGL CSSSFFGGWGS+VA EDYAAL A +    V +GKPVRF  MMKNV
Sbjct: 5  SISATGLCCSSSFFGGWGSAVAGEDYAALVAKQGPVQVGMGKPVRFRPMMKNV 57

[Close]

BLAST of MC02g1312 vs. NCBI nr
Match: XP_022964453.1 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita moschata] >KAG6593817.1 Protein PROTON GRADIENT REGULATION 5, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026151.1 Protein PROTON GRADIENT REGULATION 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 62.8 bits (151), Expect = 9.51e-11
Identity = 35/53 (66.04%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 1  SMAVTGLACSSSFFGGWGSSVAEEDYAALAAAKTAAVVRVGKPVRFMSMMKNV 53
          S++ TGL+CSSSF GGWGSSVA EDYA LA    A  V +GK VRF  MMKNV
Sbjct: 5  SISATGLSCSSSFLGGWGSSVAGEDYALLAVKPAAVQVGMGKAVRFRPMMKNV 57

[Close]

BLAST of MC02g1312 vs. NCBI nr
Match: XP_022959256.1 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita moschata] >XP_023006090.1 protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita maxima] >KAG6574897.1 Protein PROTON GRADIENT REGULATION 5, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.4 bits (150), Expect = 1.35e-10
Identity = 36/53 (67.92%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 1  SMAVTGLACSSSFFGGWGSSVAEEDYAALAAAKTAAVVRVGKPVRFMSMMKNV 53
          S++ TGL CSSSF GGWGSSVA EDYA LAA   A  V  GK VRF  MMKNV
Sbjct: 5  SISATGLCCSSSFIGGWGSSVAGEDYALLAARPAAVQVGGGKAVRFRPMMKNV 57

[Close]

BLAST of MC02g1312 vs. NCBI nr
Match: XP_023547978.1 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.4 bits (150), Expect = 1.35e-10
Identity = 36/53 (67.92%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 1  SMAVTGLACSSSFFGGWGSSVAEEDYAALAAAKTAAVVRVGKPVRFMSMMKNV 53
          S++ TGL CSSSF GGWGSSVA EDYA LAA   A  V  GK VRF  MMKNV
Sbjct: 5  SISATGLCCSSSFIGGWGSSVAGEDYALLAARPAAVQVGGGKAVRFRPMMKNV 57

[Close]

BLAST of MC02g1312 vs. ExPASy TrEMBL
Match: A0A6J1CD19 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111009630 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.83e-19
Identity = 48/53 (90.57%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 2  MAVTGLACSSSFFGGWGSSVAEEDYAALAAAKTAAV-VRVGKPVRFMSMMKNV 53
          MA TGLACSSSFFGGWGSSVA EDYAALAAAKTAAV VRVGKPVRF  MMKNV
Sbjct: 1  MAATGLACSSSFFGGWGSSVAGEDYAALAAAKTAAVQVRVGKPVRFRPMMKNV 53

[Close]

BLAST of MC02g1312 vs. ExPASy TrEMBL
Match: A0A6J1HKV7 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111464474 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.61e-11
Identity = 35/53 (66.04%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 1  SMAVTGLACSSSFFGGWGSSVAEEDYAALAAAKTAAVVRVGKPVRFMSMMKNV 53
          S++ TGL+CSSSF GGWGSSVA EDYA LA    A  V +GK VRF  MMKNV
Sbjct: 5  SISATGLSCSSSFLGGWGSSVAGEDYALLAVKPAAVQVGMGKAVRFRPMMKNV 57

[Close]

BLAST of MC02g1312 vs. ExPASy TrEMBL
Match: A0A6J1KZ80 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498938 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.52e-11
Identity = 36/53 (67.92%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 1  SMAVTGLACSSSFFGGWGSSVAEEDYAALAAAKTAAVVRVGKPVRFMSMMKNV 53
          S++ TGL CSSSF GGWGSSVA EDYA LAA   A  V  GK VRF  MMKNV
Sbjct: 5  SISATGLCCSSSFIGGWGSSVAGEDYALLAARPAAVQVGGGKAVRFRPMMKNV 57

[Close]

BLAST of MC02g1312 vs. ExPASy TrEMBL
Match: A0A6J1H4C6 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111460289 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.52e-11
Identity = 36/53 (67.92%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 1  SMAVTGLACSSSFFGGWGSSVAEEDYAALAAAKTAAVVRVGKPVRFMSMMKNV 53
          S++ TGL CSSSF GGWGSSVA EDYA LAA   A  V  GK VRF  MMKNV
Sbjct: 5  SISATGLCCSSSFIGGWGSSVAGEDYALLAARPAAVQVGGGKAVRFRPMMKNV 57

[Close]

BLAST of MC02g1312 vs. ExPASy TrEMBL
Match: B0F831 (Proton gradient regulation 5 OS=Cucumis sativus OX=3659 GN=PGR5 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.84e-10
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 1  SMAVTGLACSSSFFGGWGSSVAEEDYAALAAAKTAAVVRVGKPVRFMSMMKNV 53
          S++ TGL CSSSFFGGWGS+VA EDY AL A +    V +GKPVR   MMKNV
Sbjct: 5  SISATGLCCSSSFFGGWGSTVAGEDYPALLAKQGPVQVGMGKPVRSRPMMKNV 57

The following BLAST results are available for this feature:

BLAST of MC02g1312 vs.


Match Name	E-value	Identity	Description

BLAST of MC02g1312 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138463.1	5.85e-19	90.57	protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Momordica charantia]	[more]
XP_038875853.1	2.95e-12	67.92	protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Benincasa hispida]	[more]
XP_022964453.1	9.51e-11	66.04	protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita moschata] >K...	[more]
XP_022959256.1	1.35e-10	67.92	protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita moschata] >X...	[more]
XP_023547978.1	1.35e-10	67.92	protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita pepo subsp. ...	[more]

BLAST of MC02g1312 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CD19	2.83e-19	90.57	protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Momordica charantia ...	[more]
A0A6J1HKV7	4.61e-11	66.04	protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucurbita moschata O...	[more]
A0A6J1KZ80	6.52e-11	67.92	protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucurbita maxima OX=...	[more]
A0A6J1H4C6	6.52e-11	67.92	protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucurbita moschata O...	[more]
B0F831	1.84e-10	64.15	Proton gradient regulation 5 OS=Cucumis sativus OX=3659 GN=PGR5 PE=4 SV=1	[more]

BLAST of MC02g1312 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037497	Protein PROTON GRADIENT REGULATION 5	PANTHER	PTHR35709	PROTEIN PROTON GRADIENT REGULATION 5, CHLOROPLASTIC	coord: 1..53
None	No IPR available	PANTHER	PTHR35709:SF3	PROTON GRADIENT REGULATION 5	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC02g1312.1	MC02g1312.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0009644	response to high light intensity
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0009055	electron transfer activity