MC02g1291 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC02g1291
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC02: 12780451 .. 12780789 (-)
RNA-Seq ExpressionMC02g1291
SyntenyMC02g1291
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCTCATTACGGTTAAGCTCACTCCTGGATGCTCTGAAATTCTCCACGCGTATGCTAAAGCTTCTCTGTCGTCTTGTCCGCCGAAGAACAACAAGATTATGTTGTAGTGAGACGCCTTGTTCGATGCGGTTCGAGTGGAGCCATTTAGGCCCCGATCCACTAGGATTCCGACGGAGCAAGGTGCGTTGGATAACACATTTTGGTTTACCAATCTGAATGCTGGATTTGTAGCTTCCATTCCTCCATCGACGGTTTGTTGCTTGTGGAATGGGATGATTATGAAGGCAACGCGTTTGTCCTCGGCTAAATTGCAGATGTCTTCGTGCATTGTGGAG

mRNA sequence

ATGAATCTCATTACGGTTAAGCTCACTCCTGGATGCTCTGAAATTCTCCACGCGTATGCTAAAGCTTCTCTGTCGTCTTGTCCGCCGAAGAACAACTTAGCCTTGTTCGATGCGGTTCGAGTGGAGCCATTTAGGCCCCGATCCACTAGGATTCCGACGGAGCAAGGTGCGTTGGATAACACATTTTGGTTTACCAATCTGAATGCTGGATTTGTAGCTTCCATTCCTCCATCGACGGTTTGTTGCTTGTGGAATGGGATGATTATGAAGGCAACGCGTTTGTCCTCGGCTAAATTGCAGATGTCTTCGTGCATTGTGGAG

Coding sequence (CDS)

ATGAATCTCATTACGGTTAAGCTCACTCCTGGATGCTCTGAAATTCTCCACGCGTATGCTAAAGCTTCTCTGTCGTCTTGTCCGCCGAAGAACAACTTAGCCTTGTTCGATGCGGTTCGAGTGGAGCCATTTAGGCCCCGATCCACTAGGATTCCGACGGAGCAAGGTGCGTTGGATAACACATTTTGGTTTACCAATCTGAATGCTGGATTTGTAGCTTCCATTCCTCCATCGACGGTTTGTTGCTTGTGGAATGGGATGATTATGAAGGCAACGCGTTTGTCCTCGGCTAAATTGCAGATGTCTTCGTGCATTGTGGAG

Protein sequence

MNLITVKLTPGCSEILHAYAKASLSSCPPKNNLALFDAVRVEPFRPRSTRIPTEQGALDNTFWFTNLNAGFVASIPPSTVCCLWNGMIMKATRLSSAKLQMSSCIVE
Homology
BLAST of MC02g1291 vs. NCBI nr
Match: KAF3498260.1 (hypothetical protein DY000_02058125 [Brassica cretica])

HSP 1 Score: 61.2 bits (147), Expect = 6.36e-10
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 0

Query: 51  IPTEQGALDNTFWFTNLNAGFVASIPPSTVCCLWNGMIMKATRLSSAKLQMSSCIVE 107
           IPTEQGAL NT  F    A F  S  PS   CLWNGM M+A  LSSA++QMSS ++E
Sbjct: 3   IPTEQGALSNTLRFILRMAEFTWSTFPSIAYCLWNGMTMRAAFLSSARVQMSSLMLE 59

BLAST of MC02g1291 vs. NCBI nr
Match: KAB8118398.1 (hypothetical protein EE612_061187 [Oryza sativa] >BAH95809.1 Os12g0640550 [Oryza sativa Japonica Group] >BAT18300.1 Os12g0640550 [Oryza sativa Japonica Group])

HSP 1 Score: 55.1 bits (131), Expect = 1.02e-06
Identity = 39/98 (39.80%), Postives = 48/98 (48.98%), Query Frame = 0

Query: 18  AYAKASLSSCPP-KNNLALFDA---VRVEPFRPRSTRIPTEQGALDNTFWFTNLN----A 77
           A   AS SS PP K      D         +R RSTR+PTE GA  +TFW T        
Sbjct: 4   ASVSASRSSAPPMKTTTTPCDCDCDAAASTWRWRSTRMPTEHGASCSTFWLTRRKPKGRG 63

Query: 78  GFVASIPPSTV--CCLWNGMIMKATRLSSAKLQMSSCI 105
           G ++  PPS+   C LW G    A   SSA++QMS C+
Sbjct: 64  GSMSMAPPSSSRRCLLWKGNSTSAAMASSAQMQMSLCM 101

BLAST of MC02g1291 vs. ExPASy TrEMBL
Match: J3NFD9 (Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.04e-13
Identity = 43/90 (47.78%), Postives = 53/90 (58.89%), Query Frame = 0

Query: 18  AYAKASLSSCPPKNNLAL-FDAVRVEPF-RPRSTRIPTEQGALDNTFWFTNLNAGFVASI 77
           A   AS SS PP N       A     F RPRSTR+PTE GA  +TFWFT+ +  + AS+
Sbjct: 197 ASVSASRSSAPPMNTTTTPCGAPSACCFPRPRSTRMPTEHGASCSTFWFTSRSPRWPASM 256

Query: 78  PPSTVCCLWNGMIMKATRLSSAKLQMSSCI 105
            PS +C LWNG    A   SSA++QMS C+
Sbjct: 257 APSALCLLWNGSSTSAAMASSAQMQMSLCM 286

BLAST of MC02g1291 vs. ExPASy TrEMBL
Match: A0A0A8YLN3 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.16e-10
Identity = 40/96 (41.67%), Postives = 49/96 (51.04%), Query Frame = 0

Query: 10  PGCSEILHAYAKASLSSCPPKNNLALFDAVRVEPFRPRSTRIPTEQGALDNTFWFTNLNA 69
           PG   +  A    S SS PPK + A        P  PRSTR+PT  G    T  F++  A
Sbjct: 2   PGLCAMRVASVTTSRSSRPPKKSAATRYPAPGTPPSPRSTRMPTVHGEKRCTLLFSDWIA 61

Query: 70  GFVASIPPSTVCCLWNGMIMKATRLSSAKLQMSSCI 105
           G   S+PPS   CLWNG ++ A   SSA   MSSC+
Sbjct: 62  GLDTSMPPSMSRCLWNGSMINAECWSSAAAAMSSCM 97

BLAST of MC02g1291 vs. ExPASy TrEMBL
Match: A0A0P0YCS8 (Os12g0640550 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0640550 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.94e-07
Identity = 39/98 (39.80%), Postives = 48/98 (48.98%), Query Frame = 0

Query: 18  AYAKASLSSCPP-KNNLALFDA---VRVEPFRPRSTRIPTEQGALDNTFWFTNLN----A 77
           A   AS SS PP K      D         +R RSTR+PTE GA  +TFW T        
Sbjct: 4   ASVSASRSSAPPMKTTTTPCDCDCDAAASTWRWRSTRMPTEHGASCSTFWLTRRKPKGRG 63

Query: 78  GFVASIPPSTV--CCLWNGMIMKATRLSSAKLQMSSCI 105
           G ++  PPS+   C LW G    A   SSA++QMS C+
Sbjct: 64  GSMSMAPPSSSRRCLLWKGNSTSAAMASSAQMQMSLCM 101

BLAST of MC02g1291 vs. ExPASy TrEMBL
Match: C7J9I6 (Os12g0640550 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0640550 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.94e-07
Identity = 39/98 (39.80%), Postives = 48/98 (48.98%), Query Frame = 0

Query: 18  AYAKASLSSCPP-KNNLALFDA---VRVEPFRPRSTRIPTEQGALDNTFWFTNLN----A 77
           A   AS SS PP K      D         +R RSTR+PTE GA  +TFW T        
Sbjct: 4   ASVSASRSSAPPMKTTTTPCDCDCDAAASTWRWRSTRMPTEHGASCSTFWLTRRKPKGRG 63

Query: 78  GFVASIPPSTV--CCLWNGMIMKATRLSSAKLQMSSCI 105
           G ++  PPS+   C LW G    A   SSA++QMS C+
Sbjct: 64  GSMSMAPPSSSRRCLLWKGNSTSAAMASSAQMQMSLCM 101

BLAST of MC02g1291 vs. ExPASy TrEMBL
Match: A0A0E0MBV4 (Uncharacterized protein OS=Oryza punctata OX=4537 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 2.60e-05
Identity = 38/102 (37.25%), Postives = 45/102 (44.12%), Query Frame = 0

Query: 2   NLITVKLTP------------GCSEILHAYAKASLSSCPPKNNLALFDAVRVEPFRPRST 61
           N + VKL P            G   +  A A  S SS PPK +            RPRST
Sbjct: 120 NSLAVKLPPFWTNRSMVRSMVGFLTMRVASAATSRSSLPPKKSATTRYPPPGTAARPRST 179

Query: 62  RIPTEQGALDNTFWFTNLNAGFVASIPPSTVCCLWNGMIMKA 91
           R+PT  G    T   ++  AG+  S PPST  CLWNG  M A
Sbjct: 180 RMPTVHGEKLCTLQLSDCIAGWDTSSPPSTDRCLWNGSRMSA 221

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAF3498260.16.36e-1057.89hypothetical protein DY000_02058125 [Brassica cretica][more]
KAB8118398.11.02e-0639.80hypothetical protein EE612_061187 [Oryza sativa] >BAH95809.1 Os12g0640550 [Oryza... [more]
Match NameE-valueIdentityDescription
J3NFD97.04e-1347.78Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1[more]
A0A0A8YLN33.16e-1041.67Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A0P0YCS84.94e-0739.80Os12g0640550 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0640550 PE... [more]
C7J9I64.94e-0739.80Os12g0640550 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0640550 PE... [more]
A0A0E0MBV42.60e-0537.25Uncharacterized protein OS=Oryza punctata OX=4537 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC02g1291.1MC02g1291.1mRNA