MC02g1262 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC02g1262
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	SAUR-like auxin-responsive protein family
Location	MC02: 11739856 .. 11740101 (+)
RNA-Seq Expression	MC02g1262
Synteny	MC02g1262

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCTTGTCAAATCTTTCGAGATGAAGCTTATAGAAAAGTTGCAAGAGCTGTTGAGAAAGCCAAAGTCAAAGAAAGATCACTTTGTAGTCTACGTGGGAGAAGAACAAAAGCGATATGTCGTTCCACTGAAGTGTTTGTCGTCCATCATATTTCAGTCATTACTGAACAAATTTGAAGATGAAATTCATTCTCAAAAAGAGGGAAAGATGATATTGCCATGCTCCACTTATGTTTTCGAATCTATC

mRNA sequence

TTCCTTGTCAAATCTTTCGAGATGAAGCTTATAGAAAAGTTGCAAGAGCTGTTGAGAAAGCCAAAGTCAAAGAAAGATCACTTTGTAGTCTACGTGGGAGAAGAACAAAAGCGATATGTCGTTCCACTGAAGTGTTTGTCGTCCATCATATTTCAGTCATTACTGAACAAATTTGAAGATGAAATTCATTCTCAAAAAGAGGGAAAGATGATATTGCCATGCTCCACTTATGTTTTCGAATCTATC

Coding sequence (CDS)

TTCCTTGTCAAATCTTTCGAGATGAAGCTTATAGAAAAGTTGCAAGAGCTGTTGAGAAAGCCAAAGTCAAAGAAAGATCACTTTGTAGTCTACGTGGGAGAAGAACAAAAGCGATATGTCGTTCCACTGAAGTGTTTGTCGTCCATCATATTTCAGTCATTACTGAACAAATTTGAAGATGAAATTCATTCTCAAAAAGAGGGAAAGATGATATTGCCATGCTCCACTTATGTTTTCGAATCTATC

Protein sequence

FLVKSFEMKLIEKLQELLRKPKSKKDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI

Homology

[Close]

BLAST of MC02g1262 vs. ExPASy Swiss-Prot
Match: P0DKL1 (Auxin-responsive protein SAUR50 OS=Helianthus annuus OX=4232 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.9e-08
Identity = 26/57 (45.61%), Postives = 34/57 (59.65%), Query Frame = 0


Query: 25 KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFES 82
          K HFVVYVGE + RY+VP+ CL    FQ LL + E+E     +  +I+PC    F S
Sbjct: 41 KGHFVVYVGERRNRYIVPISCLDHPTFQDLLQRSEEEFGFNHDMGIIIPCQEVDFLS 97

[Close]

BLAST of MC02g1262 vs. ExPASy Swiss-Prot
Match: O65695 (Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.8e-07
Identity = 24/58 (41.38%), Postives = 36/58 (62.07%), Query Frame = 0


Query: 25  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI 83
           K HF VYVGE + RY+VP+  L+   FQSLL + E+E     +  + +PC   VF+++
Sbjct: 45  KGHFPVYVGENRSRYIVPISFLTHPEFQSLLQRAEEEFGFDHDMGLTIPCDELVFQTL 102

[Close]

BLAST of MC02g1262 vs. ExPASy Swiss-Prot
Match: P32295 (Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata OX=3916 GN=ARG7 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.4e-05
Identity = 23/59 (38.98%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 25 KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEI-HSQKEGKMILPCSTYVFESI 83
          K +  VYVGE  KR+V+P+  L+  +FQ LL++ E+E  +    G + +PCS  +F+ I
Sbjct: 27 KGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQHI 85

[Close]

BLAST of MC02g1262 vs. ExPASy Swiss-Prot
Match: P33083 (Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.9e-05
Identity = 23/60 (38.33%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 24 KKDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEI-HSQKEGKMILPCSTYVFESI 83
          +K +  VYVGE+ +R+V+P+  L+   FQ LL++ E+E  +    G + +PCS  VF+ I
Sbjct: 26 EKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQHI 85

[Close]

BLAST of MC02g1262 vs. ExPASy Swiss-Prot
Match: P33082 (Auxin-induced protein X15 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.2e-05
Identity = 27/78 (34.62%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 6  FEMKLIEKLQELLRKPKSKKDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEI-HS 65
          F +  I K    +  PK    +  VYVGE+ KR+V+P+  ++   FQ LL + E+E  + 
Sbjct: 3  FRLPGIRKASNAVDAPKG---YLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYD 62

Query: 66 QKEGKMILPCSTYVFESI 83
             G + +PCS  VF+ I
Sbjct: 63 HPMGGLTIPCSEEVFQRI 77

[Close]

BLAST of MC02g1262 vs. NCBI nr
Match: KAF8402501.1 (hypothetical protein HHK36_010586 [Tetracentron sinense])

HSP 1 Score: 77.0 bits (188), Expect = 4.63e-16
Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 11 IEKLQELLRKPKSKKDH-----FVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQ 70
          ++K +E +R  KSK          +YVGEE+ ++VVPLKCLSS +FQ+LLN+FEDEI ++
Sbjct: 20 LKKRKECVRMEKSKHSRVPEGSLPIYVGEERMKFVVPLKCLSSTMFQALLNQFEDEIDAK 79

Query: 71 KEGKMILPCSTYVFE 80
           EG + +PCST +F+
Sbjct: 80 VEGPIAIPCSTQMFQ 94

[Close]

BLAST of MC02g1262 vs. NCBI nr
Match: KAF8399813.1 (hypothetical protein HHK36_015684 [Tetracentron sinense])

HSP 1 Score: 72.0 bits (175), Expect = 2.03e-12
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 26 DHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI 82
          D   +YVGEE+KRYVVPL  LSS +FQ+LL +FEDEI +  +G + LPCST +FE +
Sbjct: 26 DFLPIYVGEERKRYVVPLGYLSSTLFQALLYQFEDEIVADSKGPIALPCSTQMFECV 82

[Close]

BLAST of MC02g1262 vs. NCBI nr
Match: TXG57808.1 (hypothetical protein EZV62_015637 [Acer yangbiense])

HSP 1 Score: 66.2 bits (160), Expect = 9.78e-12
Identity = 30/74 (40.54%), Postives = 47/74 (63.51%), Query Frame = 0


Query: 9  KLIEKLQELLRKPKSKKDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEG 68
          K+  K +   RK ++ K HFVVYVGEE++R+VVPL  L +  FQ LL+K  +E     + 
Sbjct: 10 KMARKQENHQRKSRAPKGHFVVYVGEEERRFVVPLSYLKNTTFQQLLHKAAEEYGFVSQN 69

Query: 69 KMILPCSTYVFESI 82
          +++LPC    F+++
Sbjct: 70 RIVLPCDESTFQTL 83

[Close]

BLAST of MC02g1262 vs. NCBI nr
Match: PON94429.1 (Small auxin-up RNA [Trema orientale])

HSP 1 Score: 65.9 bits (159), Expect = 1.14e-11
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 28 FVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI 82
          F +YVGEE KRYVVPL  LS+ IFQ+LLN+F +EI +  +  + +PCS  +FESI
Sbjct: 44 FPIYVGEEHKRYVVPLTFLSARIFQALLNQFTEEIRAVGDKPITVPCSAEMFESI 98

[Close]

BLAST of MC02g1262 vs. NCBI nr
Match: TXG59826.1 (hypothetical protein EZV62_014399 [Acer yangbiense])

HSP 1 Score: 64.3 bits (155), Expect = 5.96e-11
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 25  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI 82
           K HFVVYVGE + R++VP+ CLS   FQ+LL K EDE   ++E  + +PC   VF SI
Sbjct: 48  KGHFVVYVGENRSRHIVPISCLSHPEFQALLQKSEDEFGFKQEMGLTIPCDEVVFLSI 105

[Close]

BLAST of MC02g1262 vs. ExPASy TrEMBL
Match: A0A5C7HLR0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_015637 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.73e-12
Identity = 30/74 (40.54%), Postives = 47/74 (63.51%), Query Frame = 0


Query: 9  KLIEKLQELLRKPKSKKDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEG 68
          K+  K +   RK ++ K HFVVYVGEE++R+VVPL  L +  FQ LL+K  +E     + 
Sbjct: 10 KMARKQENHQRKSRAPKGHFVVYVGEEERRFVVPLSYLKNTTFQQLLHKAAEEYGFVSQN 69

Query: 69 KMILPCSTYVFESI 82
          +++LPC    F+++
Sbjct: 70 RIVLPCDESTFQTL 83

[Close]

BLAST of MC02g1262 vs. ExPASy TrEMBL
Match: A0A2P5F9G2 (Small auxin-up RNA OS=Trema orientale OX=63057 GN=TorRG33x02_099030 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.53e-12
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 28 FVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI 82
          F +YVGEE KRYVVPL  LS+ IFQ+LLN+F +EI +  +  + +PCS  +FESI
Sbjct: 44 FPIYVGEEHKRYVVPLTFLSARIFQALLNQFTEEIRAVGDKPITVPCSAEMFESI 98

[Close]

BLAST of MC02g1262 vs. ExPASy TrEMBL
Match: A0A5C7HU54 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_014399 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.89e-11
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 25  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI 82
           K HFVVYVGE + R++VP+ CLS   FQ+LL K EDE   ++E  + +PC   VF SI
Sbjct: 48  KGHFVVYVGENRSRHIVPISCLSHPEFQALLQKSEDEFGFKQEMGLTIPCDEVVFLSI 105

[Close]

BLAST of MC02g1262 vs. ExPASy TrEMBL
Match: A0A6A4MZX4 (Putative small auxin-up RNA OS=Lupinus albus OX=3870 GN=Lal_00009951 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.22e-11
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 25  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI 82
           K HFVVYVGE + RY+VP+  LS   FQ+LL+K E+E     E  +I+PC   VFES+
Sbjct: 43  KGHFVVYVGENRSRYIVPISILSRPEFQTLLHKAEEEFGFDHEKGLIIPCDEDVFESL 100

[Close]

BLAST of MC02g1262 vs. ExPASy TrEMBL
Match: A0A6A5M2S9 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00004669 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.22e-11
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 25  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI 82
           K HFVVYVGE + RY+VP+  LS   FQ+LL++ E+E     E  + +PC  YVFES+
Sbjct: 45  KGHFVVYVGENRSRYIVPISFLSRPEFQTLLHQAEEEFGFDHERGLTIPCEEYVFESL 102

[Close]

BLAST of MC02g1262 vs. TAIR 10
Match: AT4G34760.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 54.7 bits (130), Expect = 4.1e-08
Identity = 24/58 (41.38%), Postives = 36/58 (62.07%), Query Frame = 0


Query: 25  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI 83
           K HF VYVGE + RY+VP+  L+   FQSLL + E+E     +  + +PC   VF+++
Sbjct: 45  KGHFPVYVGENRSRYIVPISFLTHPEFQSLLQRAEEEFGFDHDMGLTIPCDELVFQTL 102

[Close]

BLAST of MC02g1262 vs. TAIR 10
Match: AT1G75580.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 54.3 bits (129), Expect = 5.4e-08
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 25  KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI 83
           K HFVVYVGE + RYVVP+  L+   FQ LL + E+E     +  + +PC   VF S+
Sbjct: 46  KGHFVVYVGENRVRYVVPISFLTRPEFQLLLQQAEEEFGFDHDMGLTIPCEEVVFRSL 103

[Close]

BLAST of MC02g1262 vs. TAIR 10
Match: AT4G36110.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 54.3 bits (129), Expect = 5.4e-08
Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 0


Query: 25 KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI 83
          K HF VYVG+ + RYVVP+  L    FQSLL   E+E   + E  + +PC   VF S+
Sbjct: 42 KGHFPVYVGQHRSRYVVPISWLDHHEFQSLLQLAEEEFGFEHEMGLTIPCDEVVFRSL 99

[Close]

BLAST of MC02g1262 vs. TAIR 10
Match: AT2G21220.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 53.5 bits (127), Expect = 9.1e-08
Identity = 24/58 (41.38%), Postives = 36/58 (62.07%), Query Frame = 0


Query: 25 KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI 83
          K HF VYVGE++ RY+VP+  L+   F+SLL + E+E     +  + +PC   VF S+
Sbjct: 42 KGHFPVYVGEKRSRYIVPISFLTHPKFKSLLQQAEEEFGFNHDMGLTIPCEEVVFRSL 99

[Close]

BLAST of MC02g1262 vs. TAIR 10
Match: AT5G66260.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 52.8 bits (125), Expect = 1.6e-07
Identity = 22/58 (37.93%), Postives = 36/58 (62.07%), Query Frame = 0


Query: 25 KDHFVVYVGEEQKRYVVPLKCLSSIIFQSLLNKFEDEIHSQKEGKMILPCSTYVFESI 83
          K HFVVYVG  + R+V+P+  L+  IFQ LL + E+E    ++  + +PC  + F ++
Sbjct: 36 KGHFVVYVGHSRSRHVIPISFLTHPIFQMLLQQSEEEFGFFQDNGLTIPCDEHFFRAL 93

The following BLAST results are available for this feature:

BLAST of MC02g1262 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0DKL1	8.9e-08	45.61	Auxin-responsive protein SAUR50 OS=Helianthus annuus OX=4232 PE=3 SV=1	[more]
O65695	5.8e-07	41.38	Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 S...	[more]
P32295	1.4e-05	38.98	Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata OX=3916 ...	[more]
P33083	1.9e-05	38.33	Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1	[more]
P33082	3.2e-05	34.62	Auxin-induced protein X15 OS=Glycine max OX=3847 PE=2 SV=1	[more]

BLAST of MC02g1262 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF8402501.1	4.63e-16	49.33	hypothetical protein HHK36_010586 [Tetracentron sinense]	[more]
KAF8399813.1	2.03e-12	57.89	hypothetical protein HHK36_015684 [Tetracentron sinense]	[more]
TXG57808.1	9.78e-12	40.54	hypothetical protein EZV62_015637 [Acer yangbiense]	[more]
PON94429.1	1.14e-11	56.36	Small auxin-up RNA [Trema orientale]	[more]
TXG59826.1	5.96e-11	51.72	hypothetical protein EZV62_014399 [Acer yangbiense]	[more]

BLAST of MC02g1262 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7HLR0	4.73e-12	40.54	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_015637 PE=3 SV=1	[more]
A0A2P5F9G2	5.53e-12	56.36	Small auxin-up RNA OS=Trema orientale OX=63057 GN=TorRG33x02_099030 PE=3 SV=1	[more]
A0A5C7HU54	2.89e-11	51.72	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_014399 PE=3 SV=1	[more]
A0A6A4MZX4	3.22e-11	51.72	Putative small auxin-up RNA OS=Lupinus albus OX=3870 GN=Lal_00009951 PE=3 SV=1	[more]
A0A6A5M2S9	3.22e-11	50.00	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00004669 PE=3 SV=1	[more]

BLAST of MC02g1262 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G34760.1	4.1e-08	41.38	SAUR-like auxin-responsive protein family	[more]
AT1G75580.1	5.4e-08	44.83	SAUR-like auxin-responsive protein family	[more]
AT4G36110.1	5.4e-08	44.83	SAUR-like auxin-responsive protein family	[more]
AT2G21220.1	9.1e-08	41.38	SAUR-like auxin-responsive protein family	[more]
AT5G66260.1	1.6e-07	37.93	SAUR-like auxin-responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 23..82 e-value: 1.7E-18 score: 66.6
None	No IPR available	PANTHER	PTHR31374:SF142	OS07G0475700 PROTEIN	coord: 21..82
None	No IPR available	PANTHER	PTHR31374	AUXIN-INDUCED PROTEIN-LIKE-RELATED	coord: 21..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC02g1262.1	MC02g1262.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin