MC02g1259 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC02g1259
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionTHO complex subunit 1
LocationMC02: 11653314 .. 11653643 (-)
RNA-Seq ExpressionMC02g1259
SyntenyMC02g1259
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTCTTTTGCAACCTCCTTTCCTGATACTTATTCGATTTCTTTTAAGAAAGGAGCAGTTATTGCCACGTGTTATAATGCAAATGCTTCTAATCATTCTTGGGACTTAGGCCTCCGTAAAGGCATTTTTGCTAGAGAGTTTGGCAATTGGGTGGCCCTCACGCAAAGATTGGAAGGCTGTAAAGTTGGGGTGGGTCAAGACAGTTTGAAATGGGCTATAGATTCCAGTGGTTCTTTCTCTTATAGGTCTTATTTCCTAAAGTTTTTCCCCTCAGCAAGGGGATTACAAGTTCCCCTAATTAAAGCCATTTTGAGGTTTAAGATTCCCAAA

mRNA sequence

GATTCTTTTGCAACCTCCTTTCCTGATACTTATTCGATTTCTTTTAAGAAAGGAGCAGTTATTGCCACGTGTTATAATGCAAATGCTTCTAATCATTCTTGGGACTTAGGCCTCCGTAAAGGCATTTTTGCTAGAGAGTTTGGCAATTGGGTGGCCCTCACGCAAAGATTGGAAGGCTGTAAAGTTGGGGTGGGTCAAGACAGTTTGAAATGGGCTATAGATTCCAGTGGTTCTTTCTCTTATAGGTCTTATTTCCTAAAGTTTTTCCCCTCAGCAAGGGGATTACAAGTTCCCCTAATTAAAGCCATTTTGAGGTTTAAGATTCCCAAA

Coding sequence (CDS)

GATTCTTTTGCAACCTCCTTTCCTGATACTTATTCGATTTCTTTTAAGAAAGGAGCAGTTATTGCCACGTGTTATAATGCAAATGCTTCTAATCATTCTTGGGACTTAGGCCTCCGTAAAGGCATTTTTGCTAGAGAGTTTGGCAATTGGGTGGCCCTCACGCAAAGATTGGAAGGCTGTAAAGTTGGGGTGGGTCAAGACAGTTTGAAATGGGCTATAGATTCCAGTGGTTCTTTCTCTTATAGGTCTTATTTCCTAAAGTTTTTCCCCTCAGCAAGGGGATTACAAGTTCCCCTAATTAAAGCCATTTTGAGGTTTAAGATTCCCAAA

Protein sequence

DSFATSFPDTYSISFKKGAVIATCYNANASNHSWDLGLRKGIFAREFGNWVALTQRLEGCKVGVGQDSLKWAIDSSGSFSYRSYFLKFFPSARGLQVPLIKAILRFKIPK
Homology
BLAST of MC02g1259 vs. NCBI nr
Match: KAA0059476.1 (Transposon TX1 uncharacterized [Cucumis melo var. makuwa] >TYK03847.1 Transposon TX1 uncharacterized [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 2.04e-16
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 0

Query: 4   ATSFPDTYSISFKKGAVIATCYNANASNHSWDLGLRKGIFAREFGNWVALTQRLEGCKVG 63
           A+ + D Y IS KK A++A  +    SN +WDLGLR+ +F RE GN++AL Q L G  V 
Sbjct: 34  ASLYHDIYLISSKKNALVAHYWVD--SNQAWDLGLRRRVFDREIGNYIALAQLLTGWVVN 93

Query: 64  VGQDSLKWAIDSSGSFSYRSYFLKFFPSARGLQVPLIKAILRFKIP 109
             +DSL+  +++SG FS +S FLK    A  + +P++  I + KIP
Sbjct: 94  RARDSLRSKLEASGQFSTKSTFLKLTKRATKVNLPVVNLIWKPKIP 137

BLAST of MC02g1259 vs. NCBI nr
Match: KAA0062399.1 (THO complex subunit 1 [Cucumis melo var. makuwa] >TYK26582.1 THO complex subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 7.46e-11
Identity = 39/110 (35.45%), Postives = 58/110 (52.73%), Query Frame = 0

Query: 1   DSFATSFPDTYSISFKKGAVIATCYNANASNHSWDLGLRKGIFAREFGNWVALTQRLEGC 60
           +  A  FP+ +S+S  K A +A C+   A  H W+LGLR+ +   +  N  A+ + L   
Sbjct: 25  EPLAVKFPNLFSVSLNKDAFVADCWCIVA--HLWNLGLRRNVLDNKLDNVAAVLEILHSW 84

Query: 61  KVGVGQDSLKWAIDSSGSFSYRSYFLKFFPSARGLQVPLIKAILRFKIPK 110
               G DSLKW  + +GSF  +S FL     +  + VPLI+ I + KI K
Sbjct: 85  APSNGGDSLKWTPNDNGSFITKSTFLNLTKRSPSIAVPLIRHIWKTKILK 132

BLAST of MC02g1259 vs. NCBI nr
Match: TYK01352.1 (hypothetical protein E5676_scaffold29G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 8.12e-10
Identity = 31/80 (38.75%), Postives = 47/80 (58.75%), Query Frame = 0

Query: 7   FPDTYSISFKKGAVIATCYNANASNHSWDLGLRKGIFAREFGNWVALTQRLEGCKVGVGQ 66
           FPD + +S  K A +A C+     +HSW+LGLR+ +   EFGN   + + L         
Sbjct: 33  FPDVFPLSLNKDAFVAECWCT--VSHSWNLGLRRNVLDSEFGNLATIMEILHLWAPNGKL 92

Query: 67  DSLKWAIDSSGSFSYRSYFL 86
           DSLKW +++SG+F+ +S FL
Sbjct: 93  DSLKWKLNASGTFTAKSTFL 110

BLAST of MC02g1259 vs. NCBI nr
Match: XP_022151325.1 (uncharacterized protein LOC111019288 [Momordica charantia])

HSP 1 Score: 65.5 bits (158), Expect = 1.20e-09
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 11  YSISFKKGAVIATCYNANASNHSWDLGLRKGIFAREFGNWVALTQRLEGCKVGVGQDSLK 70
           ++IS K  AVIA C+  N    +WDLG R+G+F RE  NW+ + QRLE  ++G   D   
Sbjct: 470 FAISLKPEAVIADCW-CNVQR-TWDLGFRRGLFDREIENWMRMVQRLEAFEIGDETDVAV 529

Query: 71  WAIDSSGSFSYRSYFLK 87
           W  D +G F+ +S +LK
Sbjct: 530 WPSDPNGHFTTKSAYLK 544

BLAST of MC02g1259 vs. NCBI nr
Match: TYK10100.1 (protein PIR [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 1.74e-09
Identity = 37/104 (35.58%), Postives = 57/104 (54.81%), Query Frame = 0

Query: 7   FPDTYSISFKKGAVIATCYNANASNHSWDLGLRKGIFAREFGNWVALTQRLEGCKVGVGQ 66
           F + +S++  K A +A C+  N + H W+LGLR+ +   E  N  ++ + L       G 
Sbjct: 235 FSNLFSLTLNKDAFVADCW-CNIT-HLWNLGLRRNVLDNELDNVASILEILHSWAPSNGG 294

Query: 67  DSLKWAIDSSGSFSYRSYFLKFFPSARGLQVPLIKAILRFKIPK 110
           DSLKW    +GSF+ +S FL     +  + VPLI+ I + KIPK
Sbjct: 295 DSLKWTRIVNGSFTKKSTFLNLTKRSPSIAVPLIRHIWKTKIPK 336

BLAST of MC02g1259 vs. ExPASy TrEMBL
Match: A0A5D3BWG7 (Transposon TX1 uncharacterized OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00410 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.88e-17
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 0

Query: 4   ATSFPDTYSISFKKGAVIATCYNANASNHSWDLGLRKGIFAREFGNWVALTQRLEGCKVG 63
           A+ + D Y IS KK A++A  +    SN +WDLGLR+ +F RE GN++AL Q L G  V 
Sbjct: 34  ASLYHDIYLISSKKNALVAHYWVD--SNQAWDLGLRRRVFDREIGNYIALAQLLTGWVVN 93

Query: 64  VGQDSLKWAIDSSGSFSYRSYFLKFFPSARGLQVPLIKAILRFKIP 109
             +DSL+  +++SG FS +S FLK    A  + +P++  I + KIP
Sbjct: 94  RARDSLRSKLEASGQFSTKSTFLKLTKRATKVNLPVVNLIWKPKIP 137

BLAST of MC02g1259 vs. ExPASy TrEMBL
Match: A0A5A7V9M3 (THO complex subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002040 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.61e-11
Identity = 39/110 (35.45%), Postives = 58/110 (52.73%), Query Frame = 0

Query: 1   DSFATSFPDTYSISFKKGAVIATCYNANASNHSWDLGLRKGIFAREFGNWVALTQRLEGC 60
           +  A  FP+ +S+S  K A +A C+   A  H W+LGLR+ +   +  N  A+ + L   
Sbjct: 25  EPLAVKFPNLFSVSLNKDAFVADCWCIVA--HLWNLGLRRNVLDNKLDNVAAVLEILHSW 84

Query: 61  KVGVGQDSLKWAIDSSGSFSYRSYFLKFFPSARGLQVPLIKAILRFKIPK 110
               G DSLKW  + +GSF  +S FL     +  + VPLI+ I + KI K
Sbjct: 85  APSNGGDSLKWTPNDNGSFITKSTFLNLTKRSPSIAVPLIRHIWKTKILK 132

BLAST of MC02g1259 vs. ExPASy TrEMBL
Match: A0A5D3BRF1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00370 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.93e-10
Identity = 31/80 (38.75%), Postives = 47/80 (58.75%), Query Frame = 0

Query: 7   FPDTYSISFKKGAVIATCYNANASNHSWDLGLRKGIFAREFGNWVALTQRLEGCKVGVGQ 66
           FPD + +S  K A +A C+     +HSW+LGLR+ +   EFGN   + + L         
Sbjct: 33  FPDVFPLSLNKDAFVAECWCT--VSHSWNLGLRRNVLDSEFGNLATIMEILHLWAPNGKL 92

Query: 67  DSLKWAIDSSGSFSYRSYFL 86
           DSLKW +++SG+F+ +S FL
Sbjct: 93  DSLKWKLNASGTFTAKSTFL 110

BLAST of MC02g1259 vs. ExPASy TrEMBL
Match: A0A6J1DAV1 (uncharacterized protein LOC111019288 OS=Momordica charantia OX=3673 GN=LOC111019288 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.83e-10
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 11  YSISFKKGAVIATCYNANASNHSWDLGLRKGIFAREFGNWVALTQRLEGCKVGVGQDSLK 70
           ++IS K  AVIA C+  N    +WDLG R+G+F RE  NW+ + QRLE  ++G   D   
Sbjct: 470 FAISLKPEAVIADCW-CNVQR-TWDLGFRRGLFDREIENWMRMVQRLEAFEIGDETDVAV 529

Query: 71  WAIDSSGSFSYRSYFLK 87
           W  D +G F+ +S +LK
Sbjct: 530 WPSDPNGHFTTKSAYLK 544

BLAST of MC02g1259 vs. ExPASy TrEMBL
Match: A0A5D3CFH0 (Protein PIR OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002420 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.42e-10
Identity = 37/104 (35.58%), Postives = 57/104 (54.81%), Query Frame = 0

Query: 7   FPDTYSISFKKGAVIATCYNANASNHSWDLGLRKGIFAREFGNWVALTQRLEGCKVGVGQ 66
           F + +S++  K A +A C+  N + H W+LGLR+ +   E  N  ++ + L       G 
Sbjct: 235 FSNLFSLTLNKDAFVADCW-CNIT-HLWNLGLRRNVLDNELDNVASILEILHSWAPSNGG 294

Query: 67  DSLKWAIDSSGSFSYRSYFLKFFPSARGLQVPLIKAILRFKIPK 110
           DSLKW    +GSF+ +S FL     +  + VPLI+ I + KIPK
Sbjct: 295 DSLKWTRIVNGSFTKKSTFLNLTKRSPSIAVPLIRHIWKTKIPK 336

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0059476.12.04e-1642.45Transposon TX1 uncharacterized [Cucumis melo var. makuwa] >TYK03847.1 Transposon... [more]
KAA0062399.17.46e-1135.45THO complex subunit 1 [Cucumis melo var. makuwa] >TYK26582.1 THO complex subunit... [more]
TYK01352.18.12e-1038.75hypothetical protein E5676_scaffold29G00370 [Cucumis melo var. makuwa][more]
XP_022151325.11.20e-0942.86uncharacterized protein LOC111019288 [Momordica charantia][more]
TYK10100.11.74e-0935.58protein PIR [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5D3BWG79.88e-1742.45Transposon TX1 uncharacterized OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7V9M33.61e-1135.45THO complex subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold31... [more]
A0A5D3BRF13.93e-1038.75Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1DAV15.83e-1042.86uncharacterized protein LOC111019288 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A5D3CFH08.42e-1035.58Protein PIR OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G002420 PE... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC02g1259.1MC02g1259.1mRNA