MC02g1217 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC02g1217
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	protein UXT homolog
Location	MC02: 11019973 .. 11021991 (+)
RNA-Seq Expression	MC02g1217
Synteny	MC02g1217

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTAAATGAAAGGATAAAATCAGAATTAAACTAAAATCTTATCCGTAGAAATCTAAAACAACTGAAATTAACCGTGAAGGAAAAAAAATCTCTGCCCAACTGAAAAAATCTCTACTAAATAAATTTCTAAAACACCACTATGTTATCTCTTTAATTCTAAGCCCAATGTGAAGCACAGCTGAAATTAACCGTTTCAAGGGAAAAAAAAACTTAAAATAATTAAAAAAAACCCTAAAAGAAGGCTACCCGGTGACCACGCATGAAGAAGGCCACCCACCACCCACGCACGAAAGCGCCCGCCTCCGTCGCCACTGACTTGACATTTATGTTTTTTAGTAAGTAAATTTAGCATTTTTATGTTAAGTTTACATATATCCTTCAAAAAAAAATTAAAAAATGACGCGTAGTTTTTTAGAAATGGACTTATTGCAGTGTCCGTGCTTCTTAGGTCTTCTATAAGTTTTGCTGCCGAAATTTCTCTTGGTCCTATTCCTTGTTGTTGATAACTATTCTGGAACATCCGCACGACAGGCAGGATCAGTTAGATTCATCAATCATGAATGTAGGAACTGATAACTTTCGCCATGAGAAAGTTCAAAGATTTGAGGAATTTGTTGACCGTCGCTTGAAACCCGACCTGGTTCATGCAATTGCTGAAAGGTATGCATTGTCGCTTTTAGTTTCTCAACTTCTTGCATTTTGACGGATCAGAATGAAGCATGGTCAATCAAGTGATTTGTAATTTTGTTCAACCCATATAGATTGATATTCTAACTTAAAAGGATGATGTATGACTTGAGATTTCCTTTCATTGTCTTCCATGGAATTACATTAAATATATATGTTGTATGAGATTTAGTAGTTTTTTTTTATTTTAGTAATTAATTCATAAATTAAGCTATGTGGTGGTGGCTGCCGGCGGGTGTCTAATGACTCTAATACATGCTTTGAGGGGAGACTTGTTCTGTAGTATCTTGAGAGCCCAAGGAAGATCTTTAACTAGGTTCGAAACAAATTTATAGAATGTCATCGACTCATTTTGTTGTTTATATCGCCTCTGTCGTAAAAGAGTTGGAAAGGCTTCAAGAAGAGTATTTTCATTAATCTCTCTCAGTCTCTCTTAGTCCTGCCAAGGAGCGGCTTGGATTGTTGAATGACTATGTAAAGGAGCTTGAGGATGTTGTTAAGGATTTTGTTACTTCAAATACTTCTTCGTCTAAGTATGGATTGGAGCTTCATTTGGTTGGCAACAGTTTTTTGGTGTCCCAAGTTTCATATGAGCTGTTCTTAGGCCTTTTGTTGGTGGTTTTTGGCTTTTTTAATGTCAGATTATTATTCAATCTAATTGTATTGCTCCTCGTTAAGCTCGTCCTTTTCTTGTTTTCCTTTTCTCTTTTTCTATCTTTCCTTCAAGCTCCCTAAGTAATTTTTCGTTTCATTTTTCAATGAAAATTTATTTTGGTTAAAAAAAGTATCTTAAGATGCCCATCTAAATGGTATGGTATCCGATTTGTTTTGTGAAAAGATCATTAAGGGCTATTAACTTTCATTTTCTTTAACATTTGTAACTAGTTAGGGACGTTTTTTGTTGCAGGGAAAGGCTATTGTTGTATATACTAATCTATGTTTGATGTTTTTAATTTGTAGAGACTAGATGTCTGTGAATTTTTCTTGAAAACTTGAGATGTAAAATTCATTTAATTCCTCCCTTCCTGTTTTGTTTTTTGTTTGGCAGGGACAAAGTGTTTGAGCAGCAGAAGGTGTTGTATCCTTTATAATTTATCTAATACCTTGTCAAATTTATGGCTTCACTCCATTCTTAGTGATTGATCCTGCCATACATTACTCTGCTCGTGTTTTGCCGCATTTTCAACGATATTTATGATATTGTTTACTTAACATTCTTTCACCCTTAGTTCAGACCTTCGAAAAAACATCGAAAATCTGGAGAAGAACAGTATAACTAACCTCAGAACGTTGGTCAATCTTGGCTCTGAAGTCTATGTGCAAGGCGATGTG

mRNA sequence

TGTAAATGAAAGGATAAAATCAGAATTAAACTAAAATCTTATCCGTAGAAATCTAAAACAACTGAAATTAACCGTGAAGGAAAAAAAATCTCTGCCCAACTGAAAAAATCTCTACTAAATAAATTTCTAAAACACCACTATGTTATCTCTTTAATTCTAAGCCCAATGTGAAGCACAGCTGAAATTAACCGTTTCAAGGGAAAAAAAAACTTAAAATAATTAAAAAAAACCCTAAAAGAAGGCTACCCGGTGACCACGCATGAAGAAGGCCACCCACCACCCACGCACGAAAGCGCCCGCCTCCGTCGCCACTGACTTGACATTTATGTTTTTTAGCAGGATCAGTTAGATTCATCAATCATGAATGTAGGAACTGATAACTTTCGCCATGAGAAAGTTCAAAGATTTGAGGAATTTGTTGACCGTCGCTTGAAACCCGACCTGGTTCATGCAATTGCTGAAAGTTCAGACCTTCGAAAAAACATCGAAAATCTGGAGAAGAACAGTATAACTAACCTCAGAACGTTGGTCAATCTTGGCTCTGAAGTCTATGTGCAAGGCGATGTG

Coding sequence (CDS)

ATGAATGTAGGAACTGATAACTTTCGCCATGAGAAAGTTCAAAGATTTGAGGAATTTGTTGACCGTCGCTTGAAACCCGACCTGGTTCATGCAATTGCTGAAAGTTCAGACCTTCGAAAAAACATCGAAAATCTGGAGAAGAACAGTATAACTAACCTCAGAACGTTGGTCAATCTTGGCTCTGAAGTCTATGTGCAAGGCGATGTG

Protein sequence

MNVGTDNFRHEKVQRFEEFVDRRLKPDLVHAIAESSDLRKNIENLEKNSITNLRTLVNLGSEVYVQGDV

Homology

[Close]

BLAST of MC02g1217 vs. NCBI nr
Match: XP_022159095.1 (protein UXT homolog [Momordica charantia] >XP_022159096.1 protein UXT homolog [Momordica charantia])

HSP 1 Score: 129 bits (323), Expect = 3.38e-36
Identity = 68/79 (86.08%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1  MNVGTDNFRHEKVQRFEEFVDRRLKPDLVHAIAES----------SDLRKNIENLEKNSI 60
          MNVGTDNFRHEKVQRFEEFVDRRLKPDLVHAIAE           SDLRKNIENLEKNSI
Sbjct: 1  MNVGTDNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRKNIENLEKNSI 60

Query: 61 TNLRTLVNLGSEVYVQGDV 69
          TNLRTLVNLGSEVYVQGDV
Sbjct: 61 TNLRTLVNLGSEVYVQGDV 79

[Close]

BLAST of MC02g1217 vs. NCBI nr
Match: XP_004141760.1 (protein UXT homolog [Cucumis sativus] >KGN45393.1 hypothetical protein Csa_016378 [Cucumis sativus])

HSP 1 Score: 121 bits (303), Expect = 3.69e-33
Identity = 64/79 (81.01%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 1  MNVGTDNFRHEKVQRFEEFVDRRLKPDLVHAIAES----------SDLRKNIENLEKNSI 60
          M+V TDNFRHEKVQRFEEFVDRRLKPDLVHAIAE           SDLR+NIENLEKNSI
Sbjct: 1  MDVVTDNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60

Query: 61 TNLRTLVNLGSEVYVQGDV 69
          TN+RTLVNLGSEVYVQGDV
Sbjct: 61 TNVRTLVNLGSEVYVQGDV 79

[Close]

BLAST of MC02g1217 vs. NCBI nr
Match: XP_008462175.1 (PREDICTED: protein UXT homolog [Cucumis melo] >KAA0059317.1 protein UXT-like protein [Cucumis melo var. makuwa] >TYK04010.1 protein UXT-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (303), Expect = 3.69e-33
Identity = 64/79 (81.01%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1  MNVGTDNFRHEKVQRFEEFVDRRLKPDLVHAIAES----------SDLRKNIENLEKNSI 60
          M+VGTD+FR+EKVQRFEEFVDRRLKPDLVHAIAE           SDLR+NIENLEKNSI
Sbjct: 1  MDVGTDSFRNEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60

Query: 61 TNLRTLVNLGSEVYVQGDV 69
          TNLRTLVNLGSEVYVQGDV
Sbjct: 61 TNLRTLVNLGSEVYVQGDV 79

[Close]

BLAST of MC02g1217 vs. NCBI nr
Match: XP_023548070.1 (protein UXT homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 116 bits (291), Expect = 2.45e-31
Identity = 62/79 (78.48%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1  MNVGTDNFRHEKVQRFEEFVDRRLKPDLVHAIAES----------SDLRKNIENLEKNSI 60
          M+VG DNFR+EKVQRFEEFVDRRLKPDLVHAIAE           SDLR+NIENLEKNSI
Sbjct: 1  MDVGIDNFRNEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60

Query: 61 TNLRTLVNLGSEVYVQGDV 69
          TNL TLVNLGSEVYVQG+V
Sbjct: 61 TNLTTLVNLGSEVYVQGNV 79

[Close]

BLAST of MC02g1217 vs. NCBI nr
Match: XP_022954004.1 (protein UXT homolog [Cucurbita moschata] >KAG7014064.1 Protein UXT-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116 bits (291), Expect = 2.45e-31
Identity = 62/79 (78.48%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1  MNVGTDNFRHEKVQRFEEFVDRRLKPDLVHAIAES----------SDLRKNIENLEKNSI 60
          M+VG DNFR+EKVQRFEEFVDRRLKPDLVHAIAE           SDLR+NIENLEKNSI
Sbjct: 1  MDVGIDNFRNEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60

Query: 61 TNLRTLVNLGSEVYVQGDV 69
          TNL TLVNLGSEVYVQG+V
Sbjct: 61 TNLTTLVNLGSEVYVQGNV 79

[Close]

BLAST of MC02g1217 vs. ExPASy TrEMBL
Match: A0A6J1E2W3 (protein UXT homolog OS=Momordica charantia OX=3673 GN=LOC111025536 PE=4 SV=1)

HSP 1 Score: 129 bits (323), Expect = 1.64e-36
Identity = 68/79 (86.08%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1  MNVGTDNFRHEKVQRFEEFVDRRLKPDLVHAIAES----------SDLRKNIENLEKNSI 60
          MNVGTDNFRHEKVQRFEEFVDRRLKPDLVHAIAE           SDLRKNIENLEKNSI
Sbjct: 1  MNVGTDNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRKNIENLEKNSI 60

Query: 61 TNLRTLVNLGSEVYVQGDV 69
          TNLRTLVNLGSEVYVQGDV
Sbjct: 61 TNLRTLVNLGSEVYVQGDV 79

[Close]

BLAST of MC02g1217 vs. ExPASy TrEMBL
Match: A0A5D3BXW7 (Protein UXT-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002080 PE=4 SV=1)

HSP 1 Score: 121 bits (303), Expect = 1.79e-33
Identity = 64/79 (81.01%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1  MNVGTDNFRHEKVQRFEEFVDRRLKPDLVHAIAES----------SDLRKNIENLEKNSI 60
          M+VGTD+FR+EKVQRFEEFVDRRLKPDLVHAIAE           SDLR+NIENLEKNSI
Sbjct: 1  MDVGTDSFRNEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60

Query: 61 TNLRTLVNLGSEVYVQGDV 69
          TNLRTLVNLGSEVYVQGDV
Sbjct: 61 TNLRTLVNLGSEVYVQGDV 79

[Close]

BLAST of MC02g1217 vs. ExPASy TrEMBL
Match: A0A0A0K7F1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447080 PE=4 SV=1)

HSP 1 Score: 121 bits (303), Expect = 1.79e-33
Identity = 64/79 (81.01%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 1  MNVGTDNFRHEKVQRFEEFVDRRLKPDLVHAIAES----------SDLRKNIENLEKNSI 60
          M+V TDNFRHEKVQRFEEFVDRRLKPDLVHAIAE           SDLR+NIENLEKNSI
Sbjct: 1  MDVVTDNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60

Query: 61 TNLRTLVNLGSEVYVQGDV 69
          TN+RTLVNLGSEVYVQGDV
Sbjct: 61 TNVRTLVNLGSEVYVQGDV 79

[Close]

BLAST of MC02g1217 vs. ExPASy TrEMBL
Match: A0A1S3CHV4 (protein UXT homolog OS=Cucumis melo OX=3656 GN=LOC103500599 PE=4 SV=1)

HSP 1 Score: 121 bits (303), Expect = 1.79e-33
Identity = 64/79 (81.01%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1  MNVGTDNFRHEKVQRFEEFVDRRLKPDLVHAIAES----------SDLRKNIENLEKNSI 60
          M+VGTD+FR+EKVQRFEEFVDRRLKPDLVHAIAE           SDLR+NIENLEKNSI
Sbjct: 1  MDVGTDSFRNEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60

Query: 61 TNLRTLVNLGSEVYVQGDV 69
          TNLRTLVNLGSEVYVQGDV
Sbjct: 61 TNLRTLVNLGSEVYVQGDV 79

[Close]

BLAST of MC02g1217 vs. ExPASy TrEMBL
Match: A0A6J1GRK9 (protein UXT homolog OS=Cucurbita moschata OX=3662 GN=LOC111456394 PE=4 SV=1)

HSP 1 Score: 116 bits (291), Expect = 1.19e-31
Identity = 62/79 (78.48%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1  MNVGTDNFRHEKVQRFEEFVDRRLKPDLVHAIAES----------SDLRKNIENLEKNSI 60
          M+VG DNFR+EKVQRFEEFVDRRLKPDLVHAIAE           SDLR+NIENLEKNSI
Sbjct: 1  MDVGIDNFRNEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60

Query: 61 TNLRTLVNLGSEVYVQGDV 69
          TNL TLVNLGSEVYVQG+V
Sbjct: 61 TNLTTLVNLGSEVYVQGNV 79

[Close]

BLAST of MC02g1217 vs. TAIR 10
Match: AT1G26660.1 (Prefoldin chaperone subunit family protein )

HSP 1 Score: 63.9 bits (154), Expect = 5.7e-11
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 9  RHEKVQRFEEFVDRRLKPDLVHAIAES----------SDLRKNIENLEKNSITNLRTLVN 68
          R + +Q  EE +D+ LK  LVHA A            SDLRKN+E LEKN + +L+T VN
Sbjct: 5  RQKDLQLLEEIIDKGLKQKLVHATASRDKIFEEQKTLSDLRKNLETLEKNGVNSLKTRVN 64

Query: 69 LGSEVYVQGDV 70
          LGSEVY+Q +V
Sbjct: 65 LGSEVYMQAEV 75

[Close]

BLAST of MC02g1217 vs. TAIR 10
Match: AT1G26660.2 (Prefoldin chaperone subunit family protein )

HSP 1 Score: 52.8 bits (125), Expect = 1.3e-07
Identity = 32/69 (46.38%), Postives = 40/69 (57.97%), Query Frame = 0


Query: 8   FRHEKVQRFEEFVDRRLKPDLVHAI-------AESSDLRKNIENLEKNSITNLRTLVNLG 67
           FR   V  F  F   R   +  H I       + SSDLRKN+E LEKN + +L+T VNLG
Sbjct: 32  FRFIVVSAFVGFAGTRSLKNKKHCILLYREDSSFSSDLRKNLETLEKNGVNSLKTRVNLG 91

Query: 68  SEVYVQGDV 70
           SEVY+Q +V
Sbjct: 92  SEVYMQAEV 100

The following BLAST results are available for this feature:

BLAST of MC02g1217 vs.


Match Name	E-value	Identity	Description

BLAST of MC02g1217 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159095.1	3.38e-36	86.08	protein UXT homolog [Momordica charantia] >XP_022159096.1 protein UXT homolog [M...	[more]
XP_004141760.1	3.69e-33	81.01	protein UXT homolog [Cucumis sativus] >KGN45393.1 hypothetical protein Csa_01637...	[more]
XP_008462175.1	3.69e-33	81.01	PREDICTED: protein UXT homolog [Cucumis melo] >KAA0059317.1 protein UXT-like pro...	[more]
XP_023548070.1	2.45e-31	78.48	protein UXT homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022954004.1	2.45e-31	78.48	protein UXT homolog [Cucurbita moschata] >KAG7014064.1 Protein UXT-like protein ...	[more]

BLAST of MC02g1217 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E2W3	1.64e-36	86.08	protein UXT homolog OS=Momordica charantia OX=3673 GN=LOC111025536 PE=4 SV=1	[more]
A0A5D3BXW7	1.79e-33	81.01	Protein UXT-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A0A0K7F1	1.79e-33	81.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447080 PE=4 SV=1	[more]
A0A1S3CHV4	1.79e-33	81.01	protein UXT homolog OS=Cucumis melo OX=3656 GN=LOC103500599 PE=4 SV=1	[more]
A0A6J1GRK9	1.19e-31	78.48	protein UXT homolog OS=Cucurbita moschata OX=3662 GN=LOC111456394 PE=4 SV=1	[more]

BLAST of MC02g1217 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26660.1	5.7e-11	49.30	Prefoldin chaperone subunit family protein	[more]
AT1G26660.2	1.3e-07	46.38	Prefoldin chaperone subunit family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 28..48
None	No IPR available	PANTHER	PTHR13345	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10	coord: 8..69
None	No IPR available	PANTHER	PTHR13345:SF4	PROTEIN UXT	coord: 8..69
IPR009053	Prefoldin	GENE3D	1.10.287.370		coord: 7..69 e-value: 2.4E-6 score: 29.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC02g1217.1	MC02g1217.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0000785	chromatin
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity