MC02g1216 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC02g1216
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Photosystem II CP43 reaction center protein
Location	MC02: 10996591 .. 10996695 (+)
RNA-Seq Expression	MC02g1216
Synteny	MC02g1216

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGGTTCTTTAAATTCCGTGGATGGCATAGCTACTGAAATTAATGCAATCAATTATGTCTCTTCTAGAAGTTGGTTAGCTACCTCTCATTTTGTTCTAGGATTC

mRNA sequence

TTAGGTTCTTTAAATTCCGTGGATGGCATAGCTACTGAAATTAATGCAATCAATTATGTCTCTTCTAGAAGTTGGTTAGCTACCTCTCATTTTGTTCTAGGATTC

Coding sequence (CDS)

TTAGGTTCTTTAAATTCCGTGGATGGCATAGCTACTGAAATTAATGCAATCAATTATGTCTCTTCTAGAAGTTGGTTAGCTACCTCTCATTTTGTTCTAGGATTC

Protein sequence

LGSLNSVDGIATEINAINYVSSRSWLATSHFVLGF

Homology

[Close]

BLAST of MC02g1216 vs. ExPASy Swiss-Prot
Match: A9LYI1 (Photosystem II CP43 reaction center protein OS=Acorus americanus OX=263995 GN=psbC PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.3e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1   LGSLNSVDGIATEINAINYVSSRSWLATSHFVLGF 36
           LGSLNSV G+ATEINA+NYVS RSWLATSHFVLGF
Sbjct: 401 LGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGF 435

[Close]

BLAST of MC02g1216 vs. ExPASy Swiss-Prot
Match: Q3V538 (Photosystem II CP43 reaction center protein OS=Acorus calamus OX=4465 GN=psbC PE=3 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 6.3e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1   LGSLNSVDGIATEINAINYVSSRSWLATSHFVLGF 36
           LGSLNSV G+ATEINA+NYVS RSWLATSHFVLGF
Sbjct: 401 LGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGF 435

[Close]

BLAST of MC02g1216 vs. ExPASy Swiss-Prot
Match: Q85FM3 (Photosystem II CP43 reaction center protein OS=Adiantum capillus-veneris OX=13818 GN=psbC PE=2 SV=3)

HSP 1 Score: 66.6 bits (161), Expect = 6.3e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1   LGSLNSVDGIATEINAINYVSSRSWLATSHFVLGF 36
           LGSLNSV G+ATEINA+NYVS RSWLATSHFVLGF
Sbjct: 401 LGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGF 435

[Close]

BLAST of MC02g1216 vs. ExPASy Swiss-Prot
Match: Q70Y07 (Photosystem II CP43 reaction center protein OS=Amborella trichopoda OX=13333 GN=psbC PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.3e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1   LGSLNSVDGIATEINAINYVSSRSWLATSHFVLGF 36
           LGSLNSV G+ATEINA+NYVS RSWLATSHFVLGF
Sbjct: 401 LGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGF 435

[Close]

BLAST of MC02g1216 vs. ExPASy Swiss-Prot
Match: Q85AU0 (Photosystem II CP43 reaction center protein OS=Anthoceros angustus OX=48387 GN=psbC PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 6.3e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1   LGSLNSVDGIATEINAINYVSSRSWLATSHFVLGF 36
           LGSLNSV G+ATEINA+NYVS RSWLATSHFVLGF
Sbjct: 401 LGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGF 435

[Close]

BLAST of MC02g1216 vs. NCBI nr
Match: TYJ27193.1 (hypothetical protein E1A91_A07G169800v1 [Gossypium mustelinum])

HSP 1 Score: 69.7 bits (169), Expect = 2.46e-14
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  LGSLNSVDGIATEINAINYVSSRSWLATSHFVLGF 35
          LGSLNS+DG+ATEIN +NYVSSRSWLATSHFVLGF
Sbjct: 6  LGSLNSIDGVATEINTVNYVSSRSWLATSHFVLGF 40

[Close]

BLAST of MC02g1216 vs. NCBI nr
Match: MBA0753695.1 (hypothetical protein [Gossypium gossypioides] >MBA0753697.1 hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 68.2 bits (165), Expect = 7.58e-14
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  LGSLNSVDGIATEINAINYVSSRSWLATSHFVLGF 35
          LGSLNSV GIATEINA+NYVS+RSWLATSHFVLGF
Sbjct: 6  LGSLNSVGGIATEINAVNYVSARSWLATSHFVLGF 40

[Close]

BLAST of MC02g1216 vs. NCBI nr
Match: AET02870.1 (photosystem II CP43 chlorophyll apoprotein [Medicago truncatula])

HSP 1 Score: 67.0 bits (162), Expect = 2.02e-13
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  LGSLNSVDGIATEINAINYVSSRSWLATSHFVLGF 35
          LGSLNSV G+ATEINA+NYVS RSWLATSHFVLGF
Sbjct: 6  LGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGF 40

[Close]

BLAST of MC02g1216 vs. NCBI nr
Match: RZC90399.1 (hypothetical protein C5167_041351 [Papaver somniferum])

HSP 1 Score: 67.4 bits (163), Expect = 2.02e-13
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  LGSLNSVDGIATEINAINYVSSRSWLATSHFVLGF 35
          L SLNSVDG+ATEINA+NYVS RSWLATSHFVLGF
Sbjct: 6  LSSLNSVDGVATEINAVNYVSPRSWLATSHFVLGF 40

[Close]

BLAST of MC02g1216 vs. NCBI nr
Match: KAG0540647.1 (hypothetical protein BDA96_03G426800 [Sorghum bicolor] >KXG33956.1 hypothetical protein SORBI_3003G395800 [Sorghum bicolor])

HSP 1 Score: 67.4 bits (163), Expect = 2.02e-13
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  LGSLNSVDGIATEINAINYVSSRSWLATSHFVLGF 35
          LGSL SVDG+ATEINA+NYVS RSWLATSHFVLGF
Sbjct: 6  LGSLTSVDGVATEINAVNYVSPRSWLATSHFVLGF 40

[Close]

BLAST of MC02g1216 vs. ExPASy TrEMBL
Match: A0A5D2YM11 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A07G169800v1 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.19e-14
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  LGSLNSVDGIATEINAINYVSSRSWLATSHFVLGF 35
          LGSLNS+DG+ATEIN +NYVSSRSWLATSHFVLGF
Sbjct: 6  LGSLNSIDGVATEINTVNYVSSRSWLATSHFVLGF 40

[Close]

BLAST of MC02g1216 vs. ExPASy TrEMBL
Match: A0A7J9CZI3 (Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_021964 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.67e-14
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 0


Query: 1  LGSLNSVDGIATEINAINYVSSRSWLATSHFVLGF 35
          LGSLNSV GIATEINA+NYVS+RSWLATSHFVLGF
Sbjct: 6  LGSLNSVGGIATEINAVNYVSARSWLATSHFVLGF 40

[Close]

BLAST of MC02g1216 vs. ExPASy TrEMBL
Match: G7LB05 (Photosystem II CP43 chlorophyll apoprotein OS=Medicago truncatula OX=3880 GN=MTR_8g056790 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.77e-14
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  LGSLNSVDGIATEINAINYVSSRSWLATSHFVLGF 35
          LGSLNSV G+ATEINA+NYVS RSWLATSHFVLGF
Sbjct: 6  LGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGF 40

[Close]

BLAST of MC02g1216 vs. ExPASy TrEMBL
Match: A0A1B6Q7R5 (Uncharacterized protein OS=Sorghum bicolor OX=4558 GN=SORBI_3003G395800 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.77e-14
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  LGSLNSVDGIATEINAINYVSSRSWLATSHFVLGF 35
          LGSL SVDG+ATEINA+NYVS RSWLATSHFVLGF
Sbjct: 6  LGSLTSVDGVATEINAVNYVSPRSWLATSHFVLGF 40

[Close]

BLAST of MC02g1216 vs. ExPASy TrEMBL
Match: A0A444ZGJ8 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B04g070372 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.25e-13
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  LGSLNSVDGIATEINAINYVSSRSWLATSHFVLGF 35
          LGSLNSV G+ATEINA+NYVS RSWLATSHFVLGF
Sbjct: 6  LGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGF 40

[Close]

BLAST of MC02g1216 vs. TAIR 10
Match: ATCG00280.1 (photosystem II reaction center protein C )

HSP 1 Score: 65.5 bits (158), Expect = 9.9e-12
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1   LGSLNSVDGIATEINAINYVSSRSWLATSHFVLGF 36
           LGSLNSV G+ATEINA+NYVS RSWL+TSHFVLGF
Sbjct: 401 LGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGF 435

The following BLAST results are available for this feature:

BLAST of MC02g1216 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9LYI1	6.3e-11	88.57	Photosystem II CP43 reaction center protein OS=Acorus americanus OX=263995 GN=ps...	[more]
Q3V538	6.3e-11	88.57	Photosystem II CP43 reaction center protein OS=Acorus calamus OX=4465 GN=psbC PE...	[more]
Q85FM3	6.3e-11	88.57	Photosystem II CP43 reaction center protein OS=Adiantum capillus-veneris OX=1381...	[more]
Q70Y07	6.3e-11	88.57	Photosystem II CP43 reaction center protein OS=Amborella trichopoda OX=13333 GN=...	[more]
Q85AU0	6.3e-11	88.57	Photosystem II CP43 reaction center protein OS=Anthoceros angustus OX=48387 GN=p...	[more]

BLAST of MC02g1216 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ27193.1	2.46e-14	88.57	hypothetical protein E1A91_A07G169800v1 [Gossypium mustelinum]	[more]
MBA0753695.1	7.58e-14	91.43	hypothetical protein [Gossypium gossypioides] >MBA0753697.1 hypothetical protein...	[more]
AET02870.1	2.02e-13	88.57	photosystem II CP43 chlorophyll apoprotein [Medicago truncatula]	[more]
RZC90399.1	2.02e-13	88.57	hypothetical protein C5167_041351 [Papaver somniferum]	[more]
KAG0540647.1	2.02e-13	88.57	hypothetical protein BDA96_03G426800 [Sorghum bicolor] >KXG33956.1 hypothetical ...	[more]

BLAST of MC02g1216 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D2YM11	1.19e-14	88.57	Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A07G169800v1 P...	[more]
A0A7J9CZI3	3.67e-14	91.43	Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_021964 PE=4 ...	[more]
G7LB05	9.77e-14	88.57	Photosystem II CP43 chlorophyll apoprotein OS=Medicago truncatula OX=3880 GN=MTR...	[more]
A0A1B6Q7R5	9.77e-14	88.57	Uncharacterized protein OS=Sorghum bicolor OX=4558 GN=SORBI_3003G395800 PE=4 SV=...	[more]
A0A444ZGJ8	1.25e-13	88.57	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B04g070372 PE=4 SV=1	[more]

BLAST of MC02g1216 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00280.1	9.9e-12	85.71	photosystem II reaction center protein C	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 1..35 e-value: 3.9E-8 score: 32.4
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 1..35
None	No IPR available	PANTHER	PTHR33180:SF21	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 1..35
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC02g1216.1	MC02g1216.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009521	photosystem
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding