MC02g1193 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC02g1193
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionPDZ_3 domain-containing protein
LocationMC02: 10646597 .. 10646812 (+)
RNA-Seq ExpressionMC02g1193
SyntenyMC02g1193
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGGCTGGCAGTTTTTGTTTCAGTGTTTTGATATATATATGTGTGTGCCCAGAGACGTGGATGGCTGGATTTTAGAATGCTTTCACAGGTGGCACCTCAAAGGGAAGGCTACAGTTTTGTGGAGATGTGCTTTTACAGCGTTTCCATGGAATGTTTGGCTGGAAAGGAATGCCTGCTCCTTTGAGGACAAAGCCAAGTCTTGGGATTCATTTTTT

mRNA sequence

AAGGGCTGGCAGTTTTTGTTTCAGTGTTTTGATATATATATGTGTGTGCCCAGAGACGTGGATGGCTGGATTTTAGAATGCTTTCACAGGTGGCACCTCAAAGGGAAGGCTACAGTTTTGTGGAGATGTGCTTTTACAGCGTTTCCATGGAATGTTTGGCTGGAAAGGAATGCCTGCTCCTTTGAGGACAAAGCCAAGTCTTGGGATTCATTTTTT

Coding sequence (CDS)

AAGGGCTGGCAGTTTTTGTTTCAGTGTTTTGATATATATATGTGTGTGCCCAGAGACGTGGATGGCTGGATTTTAGAATGCTTTCACAGGTGGCACCTCAAAGGGAAGGCTACAGTTTTGTGGAGATGTGCTTTTACAGCGTTTCCATGGAATGTTTGGCTGGAAAGGAATGCCTGCTCCTTTGAGGACAAAGCCAAGTCTTGGGATTCATTTTTT

Protein sequence

KGWQFLFQCFDIYMCVPRDVDGWILECFHRWHLKGKATVLWRCAFTAFPWNVWLERNACSFEDKAKSWDSFF
Homology
BLAST of MC02g1193 vs. NCBI nr
Match: XP_038903703.1 (ethanolamine-phosphate cytidylyltransferase isoform X2 [Benincasa hispida])

HSP 1 Score: 59.7 bits (143), Expect = 2.90e-08
Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 0

Query: 10  FDIYMCVPRDVDGWILECFHRWHLKGKATVLWRCAFTAFPWNVWLERNACSFEDKAKSWD 69
           FD++     +VD  +LE  + W+LKG+A V+  C F A  W++W ERNA +FEDK+ S+ 
Sbjct: 273 FDLFHAGHVEVDDGLLE-LNGWNLKGEAKVVGSCTFKALLWHLWKERNARTFEDKSLSFG 332

Query: 70  SF 71
           SF
Sbjct: 333 SF 333

BLAST of MC02g1193 vs. NCBI nr
Match: KAG9449628.1 (hypothetical protein H6P81_009593 [Aristolochia fimbriata])

HSP 1 Score: 55.1 bits (131), Expect = 1.35e-06
Identity = 24/64 (37.50%), Postives = 35/64 (54.69%), Query Frame = 0

Query: 3   WQFLFQCFDIYMCVPRDVDGWILECFHRWHLKGKATVLWRCAFTAFPWNVWLERNACSFE 62
           W  + Q F I  C+P+D    +L+ +    L+   T+LW+    A PWN+WLERN   FE
Sbjct: 698 WSAIMQKFGISFCMPKDFRS-LLQQWSICPLRTIGTILWKATMAAIPWNLWLERNTQIFE 757

Query: 63  DKAK 66
            K +
Sbjct: 758 GKER 760

BLAST of MC02g1193 vs. NCBI nr
Match: RVW52490.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 52.0 bits (123), Expect = 1.61e-05
Identity = 30/75 (40.00%), Postives = 37/75 (49.33%), Query Frame = 0

Query: 1   KG-WQFLFQCFDIYMCVPRDVDGWILECFHRWHLKGKATVLWRCAFTAFPWNVWLERNAC 60
           KG W  LFQ   +    PR +       F+ +    K  VLW+ A  A  W VW ERNA 
Sbjct: 356 KGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKKGVVLWQDACIALMWVVWRERNAR 415

Query: 61  SFEDKAKS----WDS 70
            FEDKA++    WDS
Sbjct: 416 IFEDKARNSGFLWDS 430

BLAST of MC02g1193 vs. NCBI nr
Match: RVW33879.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 51.6 bits (122), Expect = 2.01e-05
Identity = 27/72 (37.50%), Postives = 36/72 (50.00%), Query Frame = 0

Query: 3   WQFLFQCFDIYMCVPRDVDGWILECFHRWHLKGKATVLWRCAFTAFPWNVWLERNACSFE 62
           W  LFQ   +    PR +   +   F+ +    +  VLW+ A  A  W VW ERNA  FE
Sbjct: 187 WHRLFQSAKMDWVSPRSISDMLASNFNGFGFSKRGIVLWQNACIALMWVVWRERNARIFE 246

Query: 63  DKAKS----WDS 70
           DKA++    WDS
Sbjct: 247 DKARNSEYLWDS 258

BLAST of MC02g1193 vs. NCBI nr
Match: RVW65318.1 (hypothetical protein CK203_058130 [Vitis vinifera])

HSP 1 Score: 50.8 bits (120), Expect = 2.08e-05
Identity = 29/75 (38.67%), Postives = 37/75 (49.33%), Query Frame = 0

Query: 1   KG-WQFLFQCFDIYMCVPRDVDGWILECFHRWHLKGKATVLWRCAFTAFPWNVWLERNAC 60
           KG W  LFQ   +    PR +       F+ +    +  VLW+ A  A  W VW ERNA 
Sbjct: 78  KGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVWRERNAR 137

Query: 61  SFEDKAKS----WDS 70
            FEDKA++    WDS
Sbjct: 138 IFEDKARNSGCLWDS 152

BLAST of MC02g1193 vs. ExPASy TrEMBL
Match: A0A7N2LRL7 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.21e-07
Identity = 26/67 (38.81%), Postives = 36/67 (53.73%), Query Frame = 0

Query: 3   WQFLFQCFDIYMCVPRDVDGWILECFHRWHLKGKATVLWRCAFTAFPWNVWLERNACSFE 62
           W F+ Q F I+  +P  + G ++ C+H+W  K  + + W        W VWLERN  SFE
Sbjct: 266 WTFMLQAFGIHWVMPGSMAG-LVSCWHQWLGKHYSDI-WNLVLGCLMWIVWLERNCRSFE 325

Query: 63  DKAKSWD 69
           DK K  D
Sbjct: 326 DKEKMLD 330

BLAST of MC02g1193 vs. ExPASy TrEMBL
Match: A0A7N2M263 (Importin N-terminal domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.83e-07
Identity = 27/67 (40.30%), Postives = 35/67 (52.24%), Query Frame = 0

Query: 3   WQFLFQCFDIYMCVPRDVDGWILECFHRWHLKGKATVLWRCAFTAFPWNVWLERNACSFE 62
           W F+ Q F I+  +P  V G +L C+H+W  K    + W        W VWLERN  SFE
Sbjct: 379 WTFMLQAFGIHWVMPGSVAG-LLSCWHQWLGKHNLDI-WNLVLGCLMWIVWLERNRRSFE 438

Query: 63  DKAKSWD 69
           D  K+ D
Sbjct: 439 DIEKTLD 443

BLAST of MC02g1193 vs. ExPASy TrEMBL
Match: A0A7N2N442 (PDZ_3 domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.25e-06
Identity = 25/62 (40.32%), Postives = 34/62 (54.84%), Query Frame = 0

Query: 8   QCFDIYMCVPRDVDGWILECFHRWHLKGKATVLWRCAFTAFPWNVWLERNACSFEDKAKS 67
           + F I+  +P  V G +L C+H+W  K  + + W      F W +WLERN CSFED  K 
Sbjct: 169 KAFGIHWVMPGSVAG-LLSCWHQWLGKHNSDI-WNLVPRNFMWIMWLERNRCSFEDNEKM 228

Query: 68  WD 69
            D
Sbjct: 229 LD 228

BLAST of MC02g1193 vs. ExPASy TrEMBL
Match: A0A7N2L6D1 (zf-RVT domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.72e-06
Identity = 26/65 (40.00%), Postives = 35/65 (53.85%), Query Frame = 0

Query: 3   WQFLFQCFDIYMCVPRDVDGWILECFHRWHLKGKATVLWRCAFTAFPWNVWLERNACSFE 62
           W F+ Q F I+  +P  V G +L  +H+W  K  + + W        W VWLERN  SFE
Sbjct: 305 WAFMLQAFGIHWVMPGSVAG-LLSSWHQWLGKHNSEI-WNLVPGYLMWIVWLERNRRSFE 364

Query: 63  DKAKS 67
           DK K+
Sbjct: 365 DKEKT 367

BLAST of MC02g1193 vs. ExPASy TrEMBL
Match: A0A438EXL3 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_220 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.78e-06
Identity = 30/75 (40.00%), Postives = 37/75 (49.33%), Query Frame = 0

Query: 1   KG-WQFLFQCFDIYMCVPRDVDGWILECFHRWHLKGKATVLWRCAFTAFPWNVWLERNAC 60
           KG W  LFQ   +    PR +       F+ +    K  VLW+ A  A  W VW ERNA 
Sbjct: 356 KGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKKGVVLWQDACIALMWVVWRERNAR 415

Query: 61  SFEDKAKS----WDS 70
            FEDKA++    WDS
Sbjct: 416 IFEDKARNSGFLWDS 430

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038903703.12.90e-0845.16ethanolamine-phosphate cytidylyltransferase isoform X2 [Benincasa hispida][more]
KAG9449628.11.35e-0637.50hypothetical protein H6P81_009593 [Aristolochia fimbriata][more]
RVW52490.11.61e-0540.00putative ribonuclease H protein [Vitis vinifera][more]
RVW33879.12.01e-0537.50putative ribonuclease H protein [Vitis vinifera][more]
RVW65318.12.08e-0538.67hypothetical protein CK203_058130 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
A0A7N2LRL73.21e-0738.81Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A7N2M2634.83e-0740.30Importin N-terminal domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV... [more]
A0A7N2N4424.25e-0640.32PDZ_3 domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1[more]
A0A7N2L6D17.72e-0640.00zf-RVT domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A438EXL37.78e-0640.00Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_220 P... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC02g1193.1MC02g1193.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity