MC02g1094 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC02g1094
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ribulose-bisphosphate carboxylase large chain
Location	MC02: 9308688 .. 9308843 (+)
RNA-Seq Expression	MC02g1094
Synteny	MC02g1094

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAATGAACTTAGTTCGAATCCCTCCTCGCCCACAACCGGCCAAAAAGGGAAGGACTTTTCCCTCTGGGGGTAGGAAAATCATGATCGGGATAGCGGACCCAAAGCTATGGAACTTGGGTGTGGGTCTTTTGTCGAAATGGAATGGCCTTATCTTT

mRNA sequence

ACAATGAACTTAGTTCGAATCCCTCCTCGCCCACAACCGGCCAAAAAGGGAAGGACTTTTCCCTCTGGGGGTAGGAAAATCATGATCGGGATAGCGGACCCAAAGCTATGGAACTTGGGTGTGGGTCTTTTGTCGAAATGGAATGGCCTTATCTTT

Coding sequence (CDS)

ACAATGAACTTAGTTCGAATCCCTCCTCGCCCACAACCGGCCAAAAAGGGAAGGACTTTTCCCTCTGGGGGTAGGAAAATCATGATCGGGATAGCGGACCCAAAGCTATGGAACTTGGGTGTGGGTCTTTTGTCGAAATGGAATGGCCTTATCTTT

Protein sequence

TMNLVRIPPRPQPAKKGRTFPSGGRKIMIGIADPKLWNLGVGLLSKWNGLIF

Homology

[Close]

BLAST of MC02g1094 vs. NCBI nr
Match: THG14067.1 (hypothetical protein TEA_017317 [Camellia sinensis var. sinensis])

HSP 1 Score: 70.9 bits (172), Expect = 4.38e-13
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 1  TMNLVRIPPRPQPAKKGRTFPSGGRKIMIGIADPKLWNLGVGLL 44
          T++ VRIPPRPQPA+KGRTFPSGG+KIMIGIAD KL NLG   L
Sbjct: 43 TVSGVRIPPRPQPAQKGRTFPSGGKKIMIGIADAKLLNLGPSYL 86

[Close]

BLAST of MC02g1094 vs. NCBI nr
Match: VVW84856.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 63.5 bits (153), Expect = 1.68e-11
Identity = 33/45 (73.33%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 10 RPQPAKKGRTFPS----GGRKIMIGIADPKLWNLGVGLLSKWNGL 50
          RPQ   +GR  PS    GGRKIMIGIAD KLWN GVGLLSKWNGL
Sbjct: 38 RPQ---RGRPLPSFITSGGRKIMIGIADAKLWNSGVGLLSKWNGL 79

[Close]

BLAST of MC02g1094 vs. NCBI nr
Match: VVW89832.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 63.5 bits (153), Expect = 1.90e-11
Identity = 33/45 (73.33%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 10 RPQPAKKGRTFPS----GGRKIMIGIADPKLWNLGVGLLSKWNGL 50
          RPQ   +GR  PS    GGRKIMIGIAD KLWN GVGLLSKWNGL
Sbjct: 39 RPQ---RGRPLPSFITSGGRKIMIGIADAKLWNSGVGLLSKWNGL 80

[Close]

BLAST of MC02g1094 vs. NCBI nr
Match: VVW88655.1 (unnamed protein product, partial [Nymphaea colorata] >VVW90855.1 unnamed protein product, partial [Nymphaea colorata] >VVW93334.1 unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 61.2 bits (147), Expect = 9.24e-11
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 22 SGGRKIMIGIADPKLWNLGVGLLSKWNGL 50
          SGGRKIMIGIAD KLWN GVGLLSKWNGL
Sbjct: 35 SGGRKIMIGIADAKLWNSGVGLLSKWNGL 63

[Close]

BLAST of MC02g1094 vs. NCBI nr
Match: GAV84984.1 (hypothetical protein CFOL_v3_28424 [Cephalotus follicularis])

HSP 1 Score: 62.8 bits (151), Expect = 1.06e-10
Identity = 33/48 (68.75%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 5  VRIPPRPQPAKKGRTFPSGGRKIMIGIADPKLWNLGVGLLSKWNGLIF 52
          VRI P PQPAKKG   P GGRKI+I      LWNLGVGLLSKWNG+ F
Sbjct: 9  VRITPHPQPAKKG--IPYGGRKIII--IRIALWNLGVGLLSKWNGVTF 52

[Close]

BLAST of MC02g1094 vs. ExPASy TrEMBL
Match: A0A4V3WNW4 (Protein TIC 214 OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_017317 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.12e-13
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 1  TMNLVRIPPRPQPAKKGRTFPSGGRKIMIGIADPKLWNLGVGLL 44
          T++ VRIPPRPQPA+KGRTFPSGG+KIMIGIAD KL NLG   L
Sbjct: 43 TVSGVRIPPRPQPAQKGRTFPSGGKKIMIGIADAKLLNLGPSYL 86

[Close]

BLAST of MC02g1094 vs. ExPASy TrEMBL
Match: A0A5K1HAV1 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS29079 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 8.12e-12
Identity = 33/45 (73.33%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 10 RPQPAKKGRTFPS----GGRKIMIGIADPKLWNLGVGLLSKWNGL 50
          RPQ   +GR  PS    GGRKIMIGIAD KLWN GVGLLSKWNGL
Sbjct: 38 RPQ---RGRPLPSFITSGGRKIMIGIADAKLWNSGVGLLSKWNGL 79

[Close]

BLAST of MC02g1094 vs. ExPASy TrEMBL
Match: A0A5K1HQI3 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30503 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 9.19e-12
Identity = 33/45 (73.33%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 10 RPQPAKKGRTFPS----GGRKIMIGIADPKLWNLGVGLLSKWNGL 50
          RPQ   +GR  PS    GGRKIMIGIAD KLWN GVGLLSKWNGL
Sbjct: 39 RPQ---RGRPLPSFITSGGRKIMIGIADAKLWNSGVGLLSKWNGL 80

[Close]

BLAST of MC02g1094 vs. ExPASy TrEMBL
Match: A0A5K1HT79 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30148 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.47e-11
Identity = 27/29 (93.10%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 22 SGGRKIMIGIADPKLWNLGVGLLSKWNGL 50
          SGGRKIMIGIAD KLWN GVGLLSKWNGL
Sbjct: 35 SGGRKIMIGIADAKLWNSGVGLLSKWNGL 63

[Close]

BLAST of MC02g1094 vs. ExPASy TrEMBL
Match: A0A1Q3CXN5 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28424 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.14e-11
Identity = 33/48 (68.75%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 5  VRIPPRPQPAKKGRTFPSGGRKIMIGIADPKLWNLGVGLLSKWNGLIF 52
          VRI P PQPAKKG   P GGRKI+I      LWNLGVGLLSKWNG+ F
Sbjct: 9  VRITPHPQPAKKG--IPYGGRKIII--IRIALWNLGVGLLSKWNGVTF 52

The following BLAST results are available for this feature:

BLAST of MC02g1094 vs.


Match Name	E-value	Identity	Description

BLAST of MC02g1094 vs. NCBI nr


Match Name	E-value	Identity	Description
THG14067.1	4.38e-13	77.27	hypothetical protein TEA_017317 [Camellia sinensis var. sinensis]	[more]
VVW84856.1	1.68e-11	73.33	unnamed protein product, partial [Nymphaea colorata]	[more]
VVW89832.1	1.90e-11	73.33	unnamed protein product, partial [Nymphaea colorata]	[more]
VVW88655.1	9.24e-11	93.10	unnamed protein product, partial [Nymphaea colorata] >VVW90855.1 unnamed protein...	[more]
GAV84984.1	1.06e-10	68.75	hypothetical protein CFOL_v3_28424 [Cephalotus follicularis]	[more]

BLAST of MC02g1094 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4V3WNW4	2.12e-13	77.27	Protein TIC 214 OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_017317 PE=3 ...	[more]
A0A5K1HAV1	8.12e-12	73.33	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS29...	[more]
A0A5K1HQI3	9.19e-12	73.33	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30...	[more]
A0A5K1HT79	4.47e-11	93.10	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30...	[more]
A0A1Q3CXN5	5.14e-11	68.75	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_28424 PE=4...	[more]

BLAST of MC02g1094 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC02g1094.1	MC02g1094.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
cellular_component	GO:0016021	integral component of membrane