MC02g1003 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC02g1003
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionORF40s
LocationMC02: 8036426 .. 8036524 (-)
RNA-Seq ExpressionMC02g1003
SyntenyMC02g1003
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCCCCCGTCTTACCGCGTCTGCTGGCACGGAGTTAGCCGGAGCTTCTTCCTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCTTTACAAGCGA

mRNA sequence

CCCCCCCGTCTTACCGCGTCTGCTGGCACGGAGTTAGCCGGAGCTTCTTCCTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCTTTACAAGCGA

Coding sequence (CDS)

CCCCCCCGTCTTACCGCGTCTGCTGGCACGGAGTTAGCCGGAGCTTCTTCCTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCTTTACAAGCGA

Protein sequence

PPRLTASAGTELAGASSSSPVMIAHSTKELYKR
Homology
BLAST of MC02g1003 vs. NCBI nr
Match: KAA0060780.1 (ORF40s [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 3.42e-10
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 0

Query: 1   PPRLTASAGTELAGASSSSPVMIAHSTKELYKR 33
           PPRLTA+AGTELAGASSSSPVMIAHSTKELYKR
Sbjct: 96  PPRLTAAAGTELAGASSSSPVMIAHSTKELYKR 128

BLAST of MC02g1003 vs. NCBI nr
Match: PPD92383.1 (hypothetical protein GOBAR_DD10686 [Gossypium barbadense])

HSP 1 Score: 59.7 bits (143), Expect = 1.79e-09
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 0

Query: 1   PPRLTASAGTELAGASSSSPVMIAHSTKELYKR 33
           PPRLTA+AGTELAGASSSSPVMIAHSTKELY+R
Sbjct: 104 PPRLTAAAGTELAGASSSSPVMIAHSTKELYER 136

BLAST of MC02g1003 vs. NCBI nr
Match: GFC43629.1 (hypothetical protein GQ55_9G274100 [Tanacetum cinerariifolium])

HSP 1 Score: 57.4 bits (137), Expect = 3.24e-09
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0

Query: 1  PPRLTASAGTELAGASSSSPVMIAHSTKELYKR 33
          PPRLTA+AGTELAGASSSS VMIAHSTKELYKR
Sbjct: 41 PPRLTAAAGTELAGASSSSLVMIAHSTKELYKR 73

BLAST of MC02g1003 vs. NCBI nr
Match: PPE01242.1 (hypothetical protein GOBAR_DD01736 [Gossypium barbadense])

HSP 1 Score: 59.7 bits (143), Expect = 3.43e-09
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 0

Query: 1   PPRLTASAGTELAGASSSSPVMIAHSTKELYKR 33
           PPRLTA+AGTELAGASSSSPVMIAHSTKELY+R
Sbjct: 113 PPRLTAAAGTELAGASSSSPVMIAHSTKELYER 145

BLAST of MC02g1003 vs. NCBI nr
Match: PPR89027.1 (hypothetical protein GOBAR_AA31647 [Gossypium barbadense])

HSP 1 Score: 59.7 bits (143), Expect = 5.08e-09
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 0

Query: 1   PPRLTASAGTELAGASSSSPVMIAHSTKELYKR 33
           PPRLTA+AGTELAGASSSSPVMIAHSTKELY+R
Sbjct: 98  PPRLTAAAGTELAGASSSSPVMIAHSTKELYER 130

BLAST of MC02g1003 vs. ExPASy TrEMBL
Match: A0A0A9RWP6 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.17e-10
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 0

Query: 1   PPRLTASAGTELAGASSSSPVMIAHSTKELYKR 33
           PPRLTA+AGTELAGASSSSPVMIAHSTKELYKR
Sbjct: 77  PPRLTAAAGTELAGASSSSPVMIAHSTKELYKR 109

BLAST of MC02g1003 vs. ExPASy TrEMBL
Match: A0A5A7V0C9 (ORF40s OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44334G00020 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.66e-10
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 0

Query: 1   PPRLTASAGTELAGASSSSPVMIAHSTKELYKR 33
           PPRLTA+AGTELAGASSSSPVMIAHSTKELYKR
Sbjct: 96  PPRLTAAAGTELAGASSSSPVMIAHSTKELYKR 128

BLAST of MC02g1003 vs. ExPASy TrEMBL
Match: A0A2P5WD91 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31647 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.46e-09
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 0

Query: 1   PPRLTASAGTELAGASSSSPVMIAHSTKELYKR 33
           PPRLTA+AGTELAGASSSSPVMIAHSTKELY+R
Sbjct: 98  PPRLTAAAGTELAGASSSSPVMIAHSTKELYER 130

BLAST of MC02g1003 vs. ExPASy TrEMBL
Match: A0A7J9LS46 (Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_028329 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.45e-06
Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = 0

Query: 2  PRLTASAGTELAGASSSSPVMIAHSTKELYKR 33
          PRLTA+AGTELA  SSSSPV+IAHSTKELY++
Sbjct: 28 PRLTAAAGTELARVSSSSPVIIAHSTKELYEQ 59

BLAST of MC02g1003 vs. ExPASy TrEMBL
Match: A0A7J8W8D3 (Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_023880 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.92e-06
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 0

Query: 2  PRLTASAGTELAGASSSSPVMIAHSTKELYKR 33
          PRLTA  GTELA  SSSSPV+IAHSTKELY+R
Sbjct: 9  PRLTAPTGTELARVSSSSPVIIAHSTKELYER 40

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0060780.13.42e-1096.97ORF40s [Cucumis melo var. makuwa][more]
PPD92383.11.79e-0993.94hypothetical protein GOBAR_DD10686 [Gossypium barbadense][more]
GFC43629.13.24e-0993.94hypothetical protein GQ55_9G274100 [Tanacetum cinerariifolium][more]
PPE01242.13.43e-0993.94hypothetical protein GOBAR_DD01736 [Gossypium barbadense][more]
PPR89027.15.08e-0993.94hypothetical protein GOBAR_AA31647 [Gossypium barbadense][more]
Match NameE-valueIdentityDescription
A0A0A9RWP61.17e-1096.97Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A5A7V0C91.66e-1096.97ORF40s OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44334G00020 PE=4 ... [more]
A0A2P5WD912.46e-0993.94Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31647 PE=4 SV... [more]
A0A7J9LS461.45e-0681.25Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_028329 PE=4... [more]
A0A7J8W8D31.92e-0681.25Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_023880 PE=4... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC02g1003.1MC02g1003.1mRNA